Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g042370 Solanum pennellii HOM05D006625 ORTHO05D008060 2.3e-159 565.5 270 100.0
Solyc01g098830.3 Solanum lycopersicum HOM05D006625 ORTHO05D008060 4.2e-158 561.2 270 98.9
PGSC0003DMG400028585 Solanum tuberosum HOM05D006625 ORTHO05D008060 9.2e-153 543.5 270 95.6
Nitab4.5_0005388g0010 Nicotiana tabacum HOM05D006625 ORTHO05D008060 5.4e-137 491.1 270 85.9
Nitab4.5_0002031g0060 Nicotiana tabacum HOM05D006625 ORTHO05D008060 3.3e-134 481.9 284 82.0
Peaxi162Scf00037g00234 Petunia axillaris HOM05D006625 ORTHO05D008060 3.1e-124 448.7 280 76.8
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 1.3e-103 380.2 260 67.3
Hma1.2p1_0617F.1_g190230 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 9.0e-100 367.5 273 63.0
CSS0023168 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 1.4e-97 360.1 273 63.0
Cc00_g15580 Coffea canephora HOM05D006625 ORTHO05D008060 7.1e-97 357.8 255 65.1
GSVIVG01000035001 Vitis vinifera HOM05D006625 ORTHO05D008060 1.6e-96 356.7 260 64.6
Actinidia19797 Actinidia chinensis HOM05D006625 ORTHO05D008060 4.6e-96 355.1 270 63.0
MSTRG.28006 Avicennia marina HOM05D006625 ORTHO05D008060 3.9e-95 352.1 256 63.7
Manes.09G165400 Manihot esculenta HOM05D006625 ORTHO05D008060 1.9e-94 349.7 255 63.5
Potri.005G035600 Populus trichocarpa HOM05D006625 ORTHO05D008060 2.1e-93 346.3 257 61.9
vmacro19631 Vaccinium macrocarpon HOM05D006625 ORTHO05D008060 3.7e-93 345.5 269 62.5
Ciclev10002145m.g Citrus clementina HOM05D006625 ORTHO05D008060 1.1e-92 344.0 269 58.4
Cfa006572 Carpinus fangiana HOM05D006625 ORTHO05D008060 1.4e-92 343.6 267 59.9
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 2.0e-91 339.7 257 61.9
Lsat_1_v5_gn_2_64300 Lactuca sativa HOM05D006625 ORTHO05D008060 6.5e-90 334.7 258 60.1
TAR362G1087 Trochodendron aralioides HOM05D006625 ORTHO05D008060 6.5e-90 334.7 261 60.9
Sc16g0008430 Simmondsia chinensis HOM05D006625 ORTHO05D008060 2.5e-89 332.8 255 58.8
HanXRQChr10g0295051 Helianthus annuus HOM05D006625 ORTHO05D008060 1.2e-88 330.5 248 59.7
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 3.5e-88 328.9 272 57.7
Prupe.6G327800 Prunus persica HOM05D006625 ORTHO05D008060 4.6e-88 328.6 258 60.5
SGA_v2.0_scaffold81G26083 Striga asiatica HOM05D006625 ORTHO05D008060 1.0e-87 327.4 270 58.1
Duzib106G0694 Durio zibethinus HOM05D006625 ORTHO05D008060 1.3e-87 327.0 259 61.0
Hund07059 Selenicereus undatus HOM05D006625 ORTHO05D008060 3.0e-87 325.9 269 57.6
ECA238G3785 Erigeron canadensis HOM05D006625 ORTHO05D008060 3.3e-86 322.4 250 60.0
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 3.3e-86 322.4 254 59.4
Sabra05G0036200 Salix brachista HOM05D006625 ORTHO05D008060 3.3e-86 322.4 285 54.7
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 7.4e-86 321.2 265 56.2
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 1.6e-85 320.1 271 56.5
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 2.8e-85 319.3 253 58.5
Thecc.05G305300 Theobroma cacao HOM05D006625 ORTHO05D008060 3.7e-85 318.9 272 56.2
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 4.8e-85 318.5 253 57.7
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 1.1e-84 317.4 267 55.4
Oeu043355.5 Olea europaea HOM05D006625 ORTHO05D008060 1.4e-84 317.0 235 63.0
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 3.1e-84 315.8 259 57.9
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 4.1e-84 315.5 259 57.9
CANSAT54G0428 Cannabis sativa HOM05D006625 ORTHO05D008060 6.9e-84 314.7 259 57.1
COL.COLO4_13497 Corchorus olitorius HOM05D006625 ORTHO05D008060 6.9e-84 314.7 254 58.3
Medtr1g082740 Medicago truncatula HOM05D006625 ORTHO05D008060 6.9e-84 314.7 269 57.6
Ca_10103_v3 Cicer arietinum L. HOM05D006625 ORTHO05D008060 3.4e-83 312.4 269 55.0
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 4.5e-83 312.0 250 59.2
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 4.5e-83 312.0 250 59.2
Migut.N01952 Erythranthe guttata HOM05D006625 ORTHO05D008060 7.7e-83 311.2 252 56.3
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 7.7e-83 311.2 250 59.2
Glyma.10G155500 Glycine max HOM05D006625 ORTHO05D008060 7.7e-83 311.2 254 57.1
DCAR_029427 Daucus carota HOM05D006625 ORTHO05D008060 1.3e-82 310.5 260 55.8
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 1.7e-82 310.1 258 57.0
FvH4_6g05630 Fragaria vesca HOM05D006625 ORTHO05D008060 2.2e-82 309.7 250 58.0
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 2.9e-82 309.3 250 58.8
Rhsim05G0143100 Rhododendron simsii HOM05D006625 ORTHO05D008060 3.8e-82 308.9 233 60.5
Lj5A9T24 Lonicera japonica HOM05D006625 ORTHO05D008060 5.5e-81 305.1 241 61.8
VMungo0720G0027 Vigna mungo HOM05D006625 ORTHO05D008060 5.5e-81 305.1 263 54.0
MD04G1207100 Malus domestica HOM05D006625 ORTHO05D008060 9.4e-81 304.3 277 54.9
Lj5A588T22 Lonicera japonica HOM05D006625 ORTHO05D008060 1.6e-80 303.5 240 61.7
TPR.G6108 Trifolium pratense HOM05D006625 ORTHO05D008060 2.1e-80 303.1 261 56.3
THA.LOC104821879 Tarenaya hassleriana HOM05D006625 ORTHO05D008060 1.0e-79 300.8 255 53.7
Lj5A588T21 Lonicera japonica HOM05D006625 ORTHO05D008060 1.4e-79 300.4 240 61.2
TWI56G0867 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 1.8e-79 300.1 270 54.1
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 5.1e-79 298.5 270 54.1
Gorai.007G001300 Gossypium raimondii HOM05D006625 ORTHO05D008060 3.3e-78 295.8 259 55.2
Lj5A576T32 Lonicera japonica HOM05D006625 ORTHO05D008060 4.3e-78 295.4 240 60.8
Nn4g26222 Nelumbo nucifera HOM05D006625 ORTHO05D008060 4.3e-78 295.4 260 53.5
ClCG02G015910 Citrullus lanatus HOM05D006625 ORTHO05D008060 5.7e-78 295.0 259 53.3
Aa31LG5G15780 Aethionema arabicum HOM05D006625 ORTHO05D008060 7.4e-78 294.7 261 54.4
Eucgr.H04479 Eucalyptus grandis HOM05D006625 ORTHO05D008060 9.7e-78 294.3 257 54.9
Gohir.D11G000400 Gossypium hirsutum HOM05D006625 ORTHO05D008060 4.8e-77 292.0 259 54.4
CsaV3_2G005130 Cucumis sativus L. HOM05D006625 ORTHO05D008060 8.2e-77 291.2 257 53.3
Lj5A11T18 Lonicera japonica HOM05D006625 ORTHO05D008060 2.4e-76 289.7 235 60.9
Carub.0003s0450 Capsella rubella HOM05D006625 ORTHO05D008060 4.1e-76 288.9 271 51.7
Aqoxy2G03295 Aquilegia oxysepala HOM05D006625 ORTHO05D008060 5.3e-76 288.5 255 51.4
Thhalv10021312m.g Eutrema salsugineum HOM05D006625 ORTHO05D008060 9.1e-76 287.7 257 52.9
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 2.6e-75 286.2 269 53.2
Phvul.007G181000 Phaseolus vulgaris HOM05D006625 ORTHO05D008060 2.6e-75 286.2 254 53.5
PGR031G0551 Punica granatum HOM05D006625 ORTHO05D008060 7.7e-75 284.6 258 51.9
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 1.0e-74 284.3 259 54.8
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 1.0e-74 284.3 269 52.8
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 2.2e-74 283.1 258 54.3
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 5.0e-74 282.0 258 53.9
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 2.5e-73 279.6 256 51.2
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 5.5e-73 278.5 260 54.2
EL10Ac4g09338 Beta vulgaris HOM05D006625 ORTHO05D008060 2.7e-72 276.2 253 51.8
Haze_04209 Corylus avellana HOM05D006625 ORTHO05D008060 7.9e-72 274.6 237 56.5
TWI77G0294 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 1.4e-71 273.9 217 58.5
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 1.8e-71 273.5 230 57.0
PSO339G1258 Papaver somniferum HOM05D006625 ORTHO05D008060 2.6e-70 269.6 268 49.3
Rhsim05G0144100 Rhododendron simsii HOM05D006625 ORTHO05D008060 2.2e-69 266.5 273 50.2
CDE11G1261 Ceratophyllum demersum HOM05D006625 ORTHO05D008060 1.4e-68 263.8 213 54.0
Sed0016985 Sechium edule HOM05D006625 ORTHO05D008060 4.1e-68 262.3 255 49.4
Gohir.A11G000800 Gossypium hirsutum HOM05D006625 ORTHO05D008060 1.2e-64 250.8 237 53.2
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 3.7e-61 239.2 241 51.0
ATR0626G410 Amborella trichopoda HOM05D006625 ORTHO05D008060 4.8e-61 238.8 258 47.7
PSO801G0350 Papaver somniferum HOM05D000048 ORTHO05D000207 1.1e-60 237.7 202 53.0
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 3.2e-57 226.1 259 45.2
MELO3C004279.2 Cucumis melo HOM05D006625 ORTHO05D008060 8.3e-53 211.5 155 60.6
Zm00001eb212380 Zea mays HOM05D006625 ORTHO05D008060 3.5e-51 206.1 218 45.0
AUR62005130 Chenopodium quinoa HOM05D006625 ORTHO05D008060 1.3e-50 204.1 173 59.5
QL03p006436 Quercus lobata HOM05D006625 ORTHO05D008060 2.2e-50 203.4 140 64.3
AT3G05250 Arabidopsis thaliana HOM05D006625 ORTHO05D008060 2.5e-49 199.9 208 49.0
CARHR079590 Cardamine hirsuta HOM05D006625 ORTHO05D008060 8.8e-47 191.4 232 42.7
Lj5A1T18 Lonicera japonica HOM05D006625 ORTHO05D008060 1.3e-45 187.6 241 43.6
Lj5A1T20 Lonicera japonica HOM05D006625 ORTHO05D008060 4.9e-45 185.7 241 46.5
COL.COLO4_10909 Corchorus olitorius HOM05D006625 ORTHO05D008060 6.6e-42 175.3 250 41.2
AUR62000843 Chenopodium quinoa HOM05D006625 ORTHO05D008060 2.1e-40 170.2 246 41.1
MBI19_g05826_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 1.8e-36 157.1 206 42.2
MD12G1221000 Malus domestica HOM05D006625 ORTHO05D008060 4.6e-35 152.5 133 56.4
Lj5A11T17 Lonicera japonica HOM05D006625 ORTHO05D008060 1.0e-34 151.4 124 61.3
Mapoly0224s0007 Marchantia polymorpha HOM05D006625 ORTHO05D008060 1.2e-32 144.4 233 34.3
SEGI_37357 Sequoiadendron giganteum HOM05D006625 ORTHO05D008060 3.6e-32 142.9 191 37.7
AagrBONN_evm.TU.Sc2ySwM_362.2578 Anthoceros agrestis HOM05D006625 ORTHO05D008060 1.3e-29 134.4 242 33.9
Hma1.2p1_0617F.1_g190240 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 2.2e-29 133.7 103 61.2
Os03g0809800 Oryza sativa ssp. japonica HOM05D006625 ORTHO05D008060 4.1e-28 129.4 152 44.1
BolC3t17028H Brassica oleracea HOM05D006625 ORTHO05D008060 9.2e-28 128.3 215 32.6
FAN05G4155 Fragaria x ananassa HOM05D001310 ORTHO05D001283 1.7e-26 124.0 114 53.5
Lj5A10T21 Lonicera japonica HOM05D006625 ORTHO05D008060 2.3e-26 123.6 109 56.9
Lj5A18T33 Lonicera japonica HOM05D006625 ORTHO05D008060 6.6e-26 122.1 107 57.0
Atru.chr2.446 Acer truncatum HOM05D000091 ORTHO05D009985 8.6e-26 121.7 80 63.8
Pp3c3_27350 Physcomitrium patens HOM05D006625 ORTHO05D008060 3.1e-23 113.2 244 29.5
MBI19_g05827_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 1.6e-16 90.9 161 34.8
MD12G1221200 Malus domestica HOM05D006625 ORTHO05D008060 1.1e-12 78.2 55 69.1
HPP92_025561 Vanilla planifolia HOM05D006625 ORTHO05D008060 1.1e-12 78.2 70 47.1
CSS0021359 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 1.3e-10 71.2 123 38.2
CBR_g7977 Chara braunii HOM05D006625 ORTHO05D008060 1.7e-10 70.9 128 32.8
Prupe.1G140100 Prunus persica HOM05D007775 ORTHO05D009858 3.4e-06 56.6 272 25.0


User provided reference genes

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