Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 8.3e-171 603.6 300 100.0
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 7.0e-170 600.5 300 99.3
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 6.0e-137 491.1 331 75.8
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 1.7e-128 463.0 327 73.4
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 5.5e-122 441.4 229 96.1
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 1.0e-115 420.6 298 71.5
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 2.9e-115 419.1 299 69.9
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 8.4e-115 417.5 302 69.2
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 2.1e-113 412.9 298 68.8
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 4.6e-113 411.8 301 68.8
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 3.9e-112 408.7 331 64.0
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 1.0e-107 394.0 227 86.3
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 2.7e-105 386.0 301 63.8
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 6.1e-105 384.8 366 56.3
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 6.1e-105 384.8 300 64.3
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 3.0e-104 382.5 299 63.9
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 6.7e-104 381.3 301 62.8
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 7.4e-103 377.9 304 64.5
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 9.7e-103 377.5 300 64.3
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 6.3e-102 374.8 298 64.1
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 8.2e-102 374.4 300 63.7
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 1.8e-101 373.2 304 63.5
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 2.4e-101 372.9 295 64.1
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.1e-101 372.5 301 61.8
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 5.3e-101 371.7 300 63.0
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 5.3e-101 371.7 305 61.3
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 6.9e-101 371.3 301 62.1
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 1.2e-100 370.5 305 61.0
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 7.7e-100 367.9 315 59.0
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.0e-99 367.5 301 61.1
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.3e-99 367.1 223 77.1
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 1.7e-99 366.7 303 62.4
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 2.2e-99 366.3 305 60.7
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 2.2e-99 366.3 298 62.4
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 5.0e-99 365.2 320 58.8
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 6.5e-99 364.8 315 58.4
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 1.1e-98 364.0 304 63.8
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 1.2e-97 360.5 221 78.3
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 1.2e-97 360.5 296 61.5
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 1.8e-96 356.7 300 60.3
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 2.3e-96 356.3 235 74.9
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 3.0e-96 355.9 295 62.4
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 8.8e-96 354.4 243 72.4
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 2.5e-95 352.8 301 60.5
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 2.2e-94 349.7 301 60.1
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 2.8e-94 349.4 235 71.9
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 2.8e-94 349.4 304 58.9
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 3.7e-94 349.0 296 60.5
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 4.8e-94 348.6 313 56.9
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 4.8e-94 348.6 309 60.2
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 6.3e-94 348.2 313 56.2
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 1.8e-93 346.7 315 57.5
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 1.8e-93 346.7 315 57.1
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 2.4e-93 346.3 298 59.7
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 3.1e-93 345.9 279 62.4
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 4.1e-93 345.5 315 57.5
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 4.1e-93 345.5 315 56.8
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 4.1e-93 345.5 180 93.9
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 4.1e-93 345.5 287 62.4
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 5.3e-93 345.1 271 62.7
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 1.2e-92 344.0 297 60.9
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 1.5e-92 343.6 313 56.2
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 3.4e-92 342.4 328 54.9
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 7.7e-92 341.3 315 56.2
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 1.0e-91 340.9 247 67.6
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 1.3e-91 340.5 303 58.7
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 2.9e-91 339.3 301 58.5
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 5.0e-91 338.6 328 54.3
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 5.0e-91 338.6 243 67.1
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 1.9e-90 336.7 314 56.4
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 4.2e-90 335.5 296 58.4
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 7.9e-89 331.3 217 74.2
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 7.9e-89 331.3 300 57.0
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 7.9e-89 331.3 253 66.0
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 1.0e-88 330.9 197 76.6
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 9.7e-87 324.3 269 59.9
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 1.7e-86 323.6 326 54.6
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 2.2e-86 323.2 205 71.7
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 4.8e-86 322.0 273 62.3
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 5.9e-84 315.1 301 57.1
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 8.5e-83 311.2 219 63.9
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 2.3e-80 303.1 269 59.5
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 2.0e-79 300.1 175 81.1
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 3.3e-79 299.3 309 51.8
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 9.7e-79 297.7 284 58.5
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 1.3e-78 297.4 207 68.6
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 2.2e-78 296.6 205 73.2
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 1.9e-74 283.5 259 58.3
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 8.0e-73 278.1 294 52.4
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 7.2e-66 255.0 462 38.1
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 8.0e-65 251.5 268 51.1
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 6.3e-62 241.9 179 63.7
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 2.1e-57 226.9 219 53.9
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 8.9e-56 221.5 270 45.9
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 9.2e-53 211.5 224 47.8
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 2.3e-51 206.8 217 53.9
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 1.5e-50 204.1 202 54.0
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 1.5e-50 204.1 245 42.4
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 4.3e-50 202.6 209 48.3
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 6.2e-49 198.7 156 62.8
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 8.0e-49 198.4 236 47.9
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 8.3e-46 188.3 262 43.9
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 2.7e-44 183.3 230 42.2
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 7.8e-44 181.8 155 60.6
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 1.7e-43 180.6 288 41.3
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 2.4e-37 160.2 276 40.9
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 1.5e-34 151.0 160 49.4
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 5.4e-29 132.5 71 81.7
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 2.8e-25 120.2 69 75.4
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 2.4e-24 117.1 236 30.1
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 1.1e-21 108.2 59 86.4
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 1.7e-19 100.9 111 54.1
GSVIVG01000001001 Vitis vinifera HOM05D004613 ORTHO05D006095 1.6e-12 77.8 98 49.0
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 4.6e-12 76.3 85 43.5
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 6.7e-11 72.4 52 61.5
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 1.9e-10 70.9 50 64.0
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 5.6e-10 69.3 49 65.3
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.1e-09 65.5 49 59.2
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.1e-09 65.5 49 59.2
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.1e-09 65.5 49 59.2
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.1e-09 65.5 49 59.2
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.1e-09 65.5 49 59.2
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.1e-09 65.5 49 59.2
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.1e-09 65.5 49 59.2
Cre02.g117300 Chlamydomonas reinhardtii HOM05D004613 ORTHO05D006095 6.9e-08 62.4 168 27.4
C04p20620 Brassica napus HOM05D000249 ORTHO05D032228 4.5e-07 59.7 29 82.8
BolC2t08054H Brassica oleracea HOM05D004613 ORTHO05D014940 2.2e-06 57.4 30 76.7
BraA06t25731Z Brassica rapa HOM05D030286 ORTHO05D014940 4.9e-06 56.2 67 47.8


User provided reference genes

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