Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 6.5e-160 567.4 297 100.0
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 1.2e-158 563.1 297 99.3
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 6.7e-157 557.4 297 97.6
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 4.7e-150 534.6 297 93.3
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 3.7e-147 525.0 295 92.2
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 7.0e-146 520.8 295 91.5
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 4.9e-139 498.0 301 87.4
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 2.0e-124 449.5 297 79.1
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 9.2e-122 440.7 298 78.5
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 1.6e-121 439.9 297 77.1
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 2.3e-120 436.0 297 75.1
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 2.5e-119 432.6 297 75.8
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 7.3e-119 431.0 297 74.1
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 2.1e-118 429.5 298 75.8
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 6.2e-118 427.9 298 75.5
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 1.8e-117 426.4 295 73.2
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 3.1e-117 425.6 295 74.2
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 5.2e-117 424.9 297 73.7
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 5.2e-117 424.9 297 73.7
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 1.2e-116 423.7 297 73.7
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 5.8e-116 421.4 297 73.1
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.3e-115 420.2 295 72.5
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 1.7e-115 419.9 297 73.1
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.7e-115 419.9 295 72.5
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 2.9e-115 419.1 295 72.5
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 3.7e-115 418.7 296 72.6
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 2.4e-114 416.0 295 71.9
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 4.1e-114 415.2 295 71.9
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 4.1e-114 415.2 297 72.1
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 4.1e-114 415.2 297 71.0
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 5.4e-114 414.8 295 71.9
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 5.4e-114 414.8 296 72.0
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 7.1e-114 414.5 295 71.5
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 1.6e-113 413.3 297 72.7
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 2.3e-112 409.5 210 100.0
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 3.9e-112 408.7 297 70.7
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.5e-111 406.8 297 71.7
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 1.9e-111 406.4 297 71.4
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 4.3e-111 405.2 297 71.4
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 7.3e-111 404.4 298 72.1
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 9.5e-111 404.1 297 69.4
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 2.8e-110 402.5 297 70.4
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 3.6e-110 402.1 297 71.0
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 3.6e-110 402.1 298 68.5
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 4.7e-110 401.7 297 70.4
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 1.4e-109 400.2 297 69.0
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 1.4e-109 400.2 300 71.0
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 2.4e-109 399.4 297 70.0
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 3.1e-109 399.1 309 67.6
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 6.8e-109 397.9 297 69.4
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 8.9e-109 397.5 299 69.2
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 3.4e-108 395.6 297 68.0
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 3.4e-108 395.6 297 68.0
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 9.9e-108 394.0 297 66.7
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 9.9e-108 394.0 297 67.3
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 1.3e-107 393.7 297 66.3
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 4.9e-107 391.7 297 67.3
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 4.9e-107 391.7 298 66.8
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 1.4e-106 390.2 297 66.7
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 1.9e-106 389.8 297 66.7
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 7.1e-106 387.9 297 67.0
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 7.1e-106 387.9 296 65.9
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.6e-105 386.7 269 75.8
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 2.7e-105 386.0 297 67.3
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 3.5e-105 385.6 297 67.0
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 6.0e-105 384.8 296 67.9
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 1.0e-104 384.0 297 67.0
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 1.0e-104 384.0 297 66.0
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 6.6e-104 381.3 295 67.5
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 9.6e-103 377.5 297 65.3
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.2e-102 377.1 272 72.8
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 1.6e-102 376.7 297 65.7
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.6e-102 376.7 270 72.6
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 8.1e-102 374.4 297 65.3
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 1.8e-101 373.2 297 65.0
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 4.0e-101 372.1 297 64.6
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 6.9e-101 371.3 297 64.3
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 3.4e-100 369.0 297 64.0
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 3.4e-100 369.0 297 64.0
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 3.4e-100 369.0 297 64.3
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 7.6e-100 367.9 297 64.0
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 1.3e-99 367.1 274 69.0
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 3.8e-99 365.5 297 64.3
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 1.1e-98 364.0 297 63.0
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 3.5e-97 359.0 297 63.0
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 7.8e-97 357.8 284 66.2
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 2.3e-96 356.3 282 66.3
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 3.9e-96 355.5 297 63.0
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 3.3e-95 352.4 296 64.2
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 6.2e-94 348.2 296 61.8
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 9.0e-93 344.4 297 60.3
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 2.0e-92 343.2 289 62.6
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 9.9e-92 340.9 297 59.6
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 9.9e-92 340.9 297 57.9
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.2e-91 339.7 297 57.9
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 2.9e-91 339.3 282 63.5
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 2.9e-91 339.3 273 64.1
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 2.9e-91 339.3 261 65.5
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 3.8e-91 339.0 298 60.7
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 3.2e-90 335.9 297 61.3
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 7.9e-89 331.3 295 58.0
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 1.5e-87 327.0 299 59.5
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 2.1e-86 323.2 274 62.4
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 2.6e-84 316.2 299 56.5
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 1.3e-80 303.9 254 61.4
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 1.3e-75 287.3 210 68.6
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 5.7e-71 271.9 187 74.9
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 2.5e-66 256.5 297 50.2
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 3.6e-65 252.7 297 50.2
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 3.3e-55 219.5 254 48.4
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 1.4e-53 214.2 255 47.5
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 1.8e-53 213.8 304 43.8
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 7.0e-53 211.8 209 52.6
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.0e-51 208.0 308 41.6
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 8.5e-51 204.9 306 40.5
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 3.2e-50 203.0 255 45.1
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.0e-48 198.0 255 43.9
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 1.3e-46 191.0 293 37.9
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 1.1e-34 151.4 111 70.3
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 1.9e-34 150.6 111 71.2
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 8.3e-30 135.2 298 32.9
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 1.0e-24 118.2 96 65.6
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.1e-18 98.2 216 32.9
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.5e-18 97.8 200 34.0
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 3.1e-16 90.1 90 53.3
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 5.2e-16 89.4 51 76.5
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 4.9e-14 82.8 63 66.7
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 8.3e-14 82.0 80 51.2
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 3.5e-12 76.6 78 55.1
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 3.9e-11 73.2 69 52.2
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 6.6e-11 72.4 77 44.2
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 3.3e-10 70.1 65 60.0
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 9.5e-10 68.6 65 58.5
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 7.5e-07 58.9 150 30.0


User provided reference genes

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