Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1591.6 818 100.0
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1561.2 802 99.8
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1494.9 802 94.9
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1462.6 802 92.6
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1386.3 818 86.3
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1314.3 802 85.7
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1255.7 645 99.8
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1246.1 807 78.2
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1205.3 809 76.4
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1201.8 816 74.5
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1198.7 818 74.2
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1198.0 824 74.0
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1197.2 817 74.4
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1196.8 809 75.3
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1196.4 826 74.5
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1196.0 820 73.9
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1194.9 817 74.7
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1191.4 819 74.1
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1191.0 827 73.4
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1189.5 818 73.7
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1185.2 803 73.7
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1184.9 821 74.1
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1182.9 768 78.5
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1182.9 804 74.0
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1179.5 803 75.2
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1178.7 803 74.6
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1172.9 799 74.3
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1169.8 809 73.2
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1164.1 805 72.8
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1163.3 808 72.8
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1162.5 779 75.6
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1162.1 804 73.5
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1157.1 804 72.8
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1156.0 804 72.9
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1155.6 803 72.6
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1154.8 797 73.4
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1154.0 807 72.5
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1153.3 817 72.3
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1144.8 806 71.8
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1140.6 806 71.3
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1139.8 824 71.0
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1138.6 773 75.3
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1137.5 816 71.6
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1134.0 817 71.5
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1130.9 817 71.1
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1129.8 817 71.1
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1129.4 803 70.1
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1128.2 816 70.5
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1127.5 797 70.6
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1126.3 799 70.1
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1124.4 807 71.1
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1124.0 817 70.9
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1120.9 811 70.0
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1117.4 800 70.4
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1115.9 805 70.3
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1115.5 821 68.9
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1115.5 826 69.4
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1113.2 807 69.8
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1112.4 817 68.3
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1111.7 806 69.2
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1108.2 819 68.5
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1107.4 801 69.8
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1099.7 805 70.3
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1097.8 805 69.6
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1097.4 802 70.9
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1095.1 816 68.6
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1090.5 803 69.2
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1089.3 816 67.5
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1088.6 818 67.7
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1087.8 809 67.5
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1087.4 805 68.1
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1087.0 816 68.3
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1085.1 801 67.7
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1084.7 805 67.8
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1083.9 805 67.0
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1082.4 819 67.4
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1082.4 819 67.4
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1082.4 805 67.7
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1082.0 804 67.5
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1080.1 802 68.5
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1079.3 804 67.8
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 1.9e-310 1068.9 770 70.5
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 2.7e-309 1065.1 805 67.1
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 1.0e-308 1063.1 805 67.3
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 2.3e-308 1062.0 810 67.4
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 1.2e-307 1059.7 804 66.5
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 4.4e-307 1057.7 808 67.1
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 8.3e-306 1053.5 821 64.4
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 3.1e-305 1051.6 874 63.6
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 1.2e-304 1049.7 805 65.8
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 3.6e-301 1038.1 805 67.0
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 8.0e-301 1036.9 816 65.1
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 1.8e-297 1025.8 805 64.5
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 1.1e-294 1016.5 736 70.2
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 8.6e-287 990.3 824 63.7
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 6.8e-284 980.7 802 65.8
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 5.2e-276 954.5 820 61.0
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 5.8e-275 951.0 811 60.3
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 7.3e-270 934.1 813 59.8
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 1.6e-269 932.9 807 62.5
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 5.4e-265 917.9 815 57.8
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 8.6e-263 910.6 782 60.9
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 1.1e-260 903.7 738 62.1
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 7.6e-259 897.5 893 57.1
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.8e-223 780.0 802 52.2
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 7.9e-208 728.0 600 65.8
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 6.7e-207 724.9 652 59.4
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 1.2e-200 704.1 617 61.8
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.0e-195 686.8 630 57.9
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 5.7e-190 668.7 833 43.7
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 1.7e-189 667.2 840 44.5
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 4.5e-187 659.1 828 43.6
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 1.1e-167 594.7 813 42.3
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 2.3e-167 593.6 469 69.1
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 5.8e-166 589.0 828 44.0
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 9.5e-161 571.6 791 44.1
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 6.2e-160 568.9 791 44.1
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 6.4e-157 558.9 806 39.0
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 4.3e-153 546.2 485 59.4
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 5.6e-153 545.8 816 42.4
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 7.6e-150 535.4 453 62.9
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 2.1e-123 447.6 459 52.1
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.3e-61 241.5 179 67.6
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 3.3e-60 237.7 165 70.3
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 4.1e-47 194.1 181 56.9
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 1.3e-45 189.1 709 24.4
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 6.6e-45 186.8 148 62.8
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 7.5e-41 173.3 109 78.9
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 4.8e-19 100.9 73 67.1
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 2.6e-17 95.1 539 20.0
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 7.1e-15 87.0 73 61.6
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 6.0e-14 84.0 349 26.1
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 7.9e-14 83.6 50 88.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 7.9e-14 83.6 50 88.0
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 2.1e-11 75.5 45 82.2
CAN.G473.63 Capsicum annuum HOM05D004384 ORTHO05D115006 1.1e-10 73.2 36 97.2
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 1.1e-10 73.2 88 51.1
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 6.9e-10 70.5 157 29.3
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 5.8e-09 67.4 182 26.9
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 5.8e-09 67.4 59 59.3
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.9e-08 65.1 64 53.1
Sabra13G0031800 Salix brachista HOM05D004384 ORTHO05D037489 4.9e-08 64.3 108 38.9
CAN.G27.13 Capsicum annuum HOM05D001016 ORTHO05D016153 1.1e-07 63.2 75 46.7
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 9.3e-07 60.1 160 30.0
CAN.G71.10 Capsicum annuum HOM05D001871 ORTHO05D002022 1.2e-06 59.7 97 45.4
Sabra13G0031100 Salix brachista HOM05D004384 ORTHO05D037489 2.1e-06 58.9 84 41.7


User provided reference genes

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