Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 0.0e+00 1455.7 726 100.0
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 0.0e+00 1439.1 726 98.8
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 0.0e+00 1314.7 726 90.2
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 0.0e+00 1109.4 722 78.5
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 3.2e-301 1038.1 725 69.1
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 7.1e-301 1036.9 724 70.2
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 8.7e-299 1030.0 726 69.6
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 2.8e-297 1025.0 730 69.3
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 2.6e-295 1018.5 701 71.3
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 2.6e-295 1018.5 722 69.1
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 2.4e-288 995.3 726 67.5
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 3.1e-288 995.0 790 63.0
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 4.0e-288 994.6 723 66.7
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 9.0e-288 993.4 728 68.0
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 4.3e-282 974.5 618 81.7
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 8.2e-281 970.3 729 65.4
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 4.2e-277 958.0 734 63.8
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 7.1e-277 957.2 734 63.6
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 3.5e-276 954.9 735 64.6
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 4.6e-276 954.5 747 63.7
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 1.8e-275 952.6 733 63.3
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 5.1e-275 951.0 734 63.5
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 1.5e-274 949.5 730 64.4
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.4e-272 943.0 727 64.4
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 1.4e-272 943.0 727 65.2
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 2.4e-272 942.2 730 64.4
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 2.4e-272 942.2 727 64.4
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.1e-272 941.8 727 64.4
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 3.1e-272 941.8 729 64.5
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 9.0e-272 940.3 769 61.2
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 2.0e-271 939.1 730 63.7
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 2.6e-271 938.7 722 64.0
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 7.7e-271 937.2 729 62.6
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 1.0e-270 936.8 731 63.6
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.9e-270 935.3 727 64.1
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 2.5e-269 932.2 728 63.6
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 2.7e-268 928.7 722 61.8
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 4.6e-268 927.9 765 60.4
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 2.5e-266 922.2 703 64.9
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 9.7e-266 920.2 726 62.9
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 8.2e-265 917.1 723 62.5
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 2.6e-263 912.1 744 60.5
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 4.5e-263 911.4 723 61.7
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 1.3e-262 909.8 725 61.9
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 1.3e-262 909.8 727 61.2
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 1.1e-261 906.7 740 60.9
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 7.2e-261 904.0 723 61.8
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 2.7e-260 902.1 725 61.4
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 3.6e-260 901.7 723 61.5
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 3.6e-260 901.7 727 61.6
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 6.1e-260 901.0 723 61.0
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 1.0e-259 900.2 729 61.2
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 8.8e-259 897.1 729 61.2
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 1.1e-258 896.7 723 61.3
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 2.6e-258 895.6 723 61.1
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 1.3e-257 893.3 725 60.8
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 1.3e-257 893.3 735 60.3
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 2.8e-257 892.1 725 60.8
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 2.8e-257 892.1 729 60.8
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 6.3e-257 891.0 732 60.2
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 6.3e-257 891.0 723 60.7
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 5.3e-256 887.9 730 61.1
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 1.5e-253 879.8 725 60.6
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.9e-253 879.4 730 60.3
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 4.7e-252 874.8 729 59.1
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 8.0e-252 874.0 727 59.8
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 5.2e-251 871.3 726 59.0
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.7e-249 866.3 730 59.2
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 7.0e-248 860.9 723 59.9
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 6.3e-241 837.8 674 60.5
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 8.3e-241 837.4 708 58.5
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 1.4e-240 836.6 528 81.4
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 4.5e-239 831.6 728 58.7
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 1.7e-238 829.7 707 58.4
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 2.5e-237 825.9 722 57.6
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 1.4e-235 820.1 653 62.3
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 2.7e-231 805.8 726 55.8
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 3.7e-225 785.4 637 61.9
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 2.3e-222 776.2 703 55.8
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 2.3e-222 776.2 819 52.3
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 5.0e-222 775.0 755 53.5
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 1.9e-221 773.1 609 61.7
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 2.0e-218 763.1 605 61.5
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 2.7e-215 752.7 727 53.0
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 3.5e-215 752.3 731 54.4
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 2.3e-214 749.6 607 60.5
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 5.6e-213 745.0 673 57.9
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.0e-206 724.2 495 69.3
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 5.1e-206 721.8 622 60.0
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 9.9e-202 707.6 383 94.5
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 1.2e-199 700.7 762 49.9
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 8.1e-196 688.0 619 55.3
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 5.4e-192 675.2 500 65.4
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 5.1e-190 668.7 456 69.3
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 1.6e-188 663.7 637 53.8
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 9.9e-186 654.4 624 55.6
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 3.8e-185 652.5 732 48.6
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.4e-179 634.0 454 65.9
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 8.5e-161 571.6 736 44.2
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 5.9e-154 548.9 743 41.5
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 3.0e-150 536.6 602 47.2
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 3.4e-146 523.1 415 62.7
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.2e-129 467.2 588 42.5
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 1.9e-128 464.2 629 44.0
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 9.4e-128 461.8 346 65.9
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 3.6e-127 459.9 446 53.1
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 1.2e-122 444.9 844 35.3
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.0e-106 391.0 554 39.9
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.9e-104 384.4 488 42.8
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 4.9e-100 369.8 289 60.6
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.0e-93 347.8 478 41.2
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 6.2e-87 326.2 225 67.1
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 3.1e-70 270.8 230 62.6
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.0e-61 241.5 188 63.8
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 4.6e-58 230.3 244 47.5
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 1.3e-57 228.8 669 30.2
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 8.2e-55 219.5 125 73.6
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 4.9e-52 210.3 318 39.6
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 3.0e-49 201.1 144 67.4
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 4.3e-48 197.2 126 72.2
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 4.5e-45 187.2 280 35.4
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 3.8e-44 184.1 126 69.8
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.7e-42 177.9 193 51.8
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.0e-33 149.4 114 55.3
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 2.0e-32 145.2 104 65.4
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 1.3e-31 142.5 84 85.7
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.4e-30 139.0 104 62.5
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.5e-29 135.6 169 46.2
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 6.1e-26 123.6 130 49.2
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 4.4e-16 90.9 81 53.1
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 4.8e-15 87.4 107 45.8
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 5.9e-13 80.5 86 58.1
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 1.3e-12 79.3 59 61.0
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 3.2e-11 74.7 61 57.4
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 4.2e-11 74.3 263 29.3
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 3.0e-09 68.2 44 65.9
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 6.8e-09 67.0 88 46.6
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 1.2e-08 66.2 44 63.6
arahy.Tifrunner.gnm1.ann1.1SX7LU Arachis hypogaea HOM05D005479 ORTHO05D019704 2.4e-06 58.5 72 44.4


User provided reference genes

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