Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g041030 Solanum pennellii HOM05D007627 ORTHO05D009640 9.8e-43 176.4 90 100.0
Solyc01g097360.4 Solanum lycopersicum HOM05D007627 ORTHO05D009640 8.3e-42 173.3 90 98.9
CAN.G134.101 Capsicum annuum HOM05D007627 ORTHO05D009640 1.1e-38 162.9 90 91.1
Nitab4.5_0012228g0040 Nicotiana tabacum HOM05D007627 ORTHO05D009640 8.0e-37 156.8 90 90.0
Peaxi162Scf00282g00336 Petunia axillaris HOM05D007627 ORTHO05D009640 8.0e-37 156.8 90 88.9
Nitab4.5_0001592g0100 Nicotiana tabacum HOM05D007627 ORTHO05D009640 9.8e-35 149.8 90 85.6
Dinv33113 Davidia involucrata HOM05D000361 ORTHO05D005006 8.9e-28 126.7 91 72.5
Cc02_g30590 Coffea canephora HOM05D007627 ORTHO05D009640 4.1e-25 117.9 83 74.7
Actinidia21001 Actinidia chinensis HOM05D007627 ORTHO05D009640 9.2e-25 116.7 89 68.5
RcHm_v2.0_Chr7g0241611 Rosa chinensis HOM05D007627 ORTHO05D009640 7.8e-24 113.6 88 68.2
MD03G1295800 Malus domestica HOM05D007627 ORTHO05D009640 3.0e-23 111.7 88 68.2
Oeu038438.1 Olea europaea HOM05D007627 ORTHO05D009640 3.9e-23 111.3 88 64.8
TAR381G1624 Trochodendron aralioides HOM05D007627 ORTHO05D009640 1.9e-22 109.0 91 64.8
Dinv10091 Davidia involucrata HOM05D007627 ORTHO05D009640 3.3e-22 108.2 76 72.4
Glyma.18G296500 Glycine max HOM05D007627 ORTHO05D009640 4.3e-22 107.8 87 69.0
Hma1.2p1_0212F.1_g089970 Hydrangea macrophylla HOM05D007627 ORTHO05D009640 5.6e-22 107.5 78 70.5
Prupe.8G271600 Prunus persica HOM05D007627 ORTHO05D009640 7.3e-22 107.1 88 64.8
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 9.5e-22 106.7 76 71.1
CSS0016321 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 1.2e-21 106.3 90 62.2
CSS0031687 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 1.6e-21 105.9 90 63.3
Rhsim01G0290400 Rhododendron simsii HOM05D007627 ORTHO05D009640 2.8e-21 105.1 89 64.0
Atru.chr5.1007 Acer truncatum HOM05D007627 ORTHO05D009640 4.7e-21 104.4 89 65.2
Manes.05G003000 Manihot esculenta HOM05D007627 ORTHO05D009640 6.2e-21 104.0 89 64.0
SalBow8G4146 Salvia bowleyana HOM05D007627 ORTHO05D009640 8.1e-21 103.6 88 59.1
MSTRG.21216 Avicennia marina HOM05D007627 ORTHO05D009640 1.8e-20 102.4 90 61.1
Phvul.008G006000 Phaseolus vulgaris HOM05D007627 ORTHO05D009640 1.8e-20 102.4 91 63.7
VMungo1383G2294 Vigna mungo HOM05D007627 ORTHO05D009640 2.4e-20 102.1 90 64.4
Actinidia25845 Actinidia chinensis HOM05D007627 ORTHO05D009640 6.8e-20 100.5 89 60.7
Medtr7g007290 Medicago truncatula HOM05D007627 ORTHO05D009640 8.9e-20 100.1 89 60.7
FAN16G0578 Fragaria x ananassa HOM05D007627 ORTHO05D009640 2.0e-19 99.0 88 63.6
FAN25G0556 Fragaria x ananassa HOM05D007627 ORTHO05D009640 2.0e-19 99.0 83 65.1
DCAR_005763 Daucus carota HOM05D000361 ORTHO05D005006 3.4e-19 98.2 76 71.1
Haze_05035 Corylus avellana HOM05D007627 ORTHO05D009640 4.4e-19 97.8 76 69.7
FvH4_3g25590 Fragaria vesca HOM05D007627 ORTHO05D009640 4.4e-19 97.8 83 63.9
FAN11G3818 Fragaria x ananassa HOM05D007627 ORTHO05D009640 4.4e-19 97.8 83 63.9
FAN21G2770 Fragaria x ananassa HOM05D007627 ORTHO05D009640 4.4e-19 97.8 83 63.9
Migut.B01085 Erythranthe guttata HOM05D007627 ORTHO05D009640 7.6e-19 97.1 91 57.1
Sed0009470 Sechium edule HOM05D007627 ORTHO05D009640 9.9e-19 96.7 89 62.9
CiPaw.07G117000 Carya illinoinensis HOM05D007627 ORTHO05D009640 1.3e-18 96.3 87 63.2
CANSAT78G1399 Cannabis sativa HOM05D007627 ORTHO05D009640 2.9e-18 95.1 89 59.6
Thecc.01G312700 Theobroma cacao HOM05D007627 ORTHO05D009640 4.9e-18 94.4 77 67.5
Lalb_Chr10g0091241 Lupinus albus HOM05D007627 ORTHO05D009640 6.4e-18 94.0 89 64.0
MELO3C010153.2 Cucumis melo HOM05D007627 ORTHO05D009640 1.1e-17 93.2 77 68.8
Sc17g0000480 Simmondsia chinensis HOM05D007627 ORTHO05D009640 1.1e-17 93.2 83 60.2
Ciclev10023058m.g Citrus clementina HOM05D007627 ORTHO05D009640 1.4e-17 92.8 89 56.2
Cfa005805 Carpinus fangiana HOM05D007627 ORTHO05D009640 2.4e-17 92.0 76 65.8
ClCG10G011370 Citrullus lanatus HOM05D007627 ORTHO05D009640 2.4e-17 92.0 90 58.9
Ca_04047_v3 Cicer arietinum L. HOM05D007627 ORTHO05D009640 4.2e-17 91.3 90 60.0
Lalb_Chr04g0257421 Lupinus albus HOM05D007627 ORTHO05D009640 5.4e-17 90.9 77 66.2
PGR119G1365 Punica granatum HOM05D007627 ORTHO05D009640 9.2e-17 90.1 87 59.8
QL02p088799 Quercus lobata HOM05D007627 ORTHO05D009640 9.2e-17 90.1 88 58.0
CsaV3_1G045260 Cucumis sativus L. HOM05D007627 ORTHO05D009640 1.6e-16 89.4 77 66.2
HanXRQChr01g0000791 Helianthus annuus HOM05D007627 ORTHO05D009640 2.1e-16 89.0 88 55.7
HanXRQChr11g0329361 Helianthus annuus HOM05D007627 ORTHO05D009640 3.5e-16 88.2 84 58.3
Potri.014G121300 Populus trichocarpa HOM05D007627 ORTHO05D009640 4.6e-16 87.8 89 58.4
AUR62037635 Chenopodium quinoa HOM05D007627 ORTHO05D009640 6.0e-16 87.4 82 61.0
unitig_578.g15942 Utricularia gibba HOM05D007627 ORTHO05D009640 7.8e-16 87.0 77 59.7
Cfa005807 Carpinus fangiana HOM05D007627 ORTHO05D009640 1.7e-15 85.9 76 60.5
Lj1g0016177 Lotus japonicus HOM05D007627 ORTHO05D009640 1.7e-15 85.9 89 57.3
TPR.G35989 Trifolium pratense HOM05D007627 ORTHO05D009640 1.7e-15 85.9 89 57.3
Eucgr.H01048 Eucalyptus grandis HOM05D007627 ORTHO05D009640 3.0e-15 85.1 78 62.8
QL12p020023 Quercus lobata HOM05D007627 ORTHO05D009640 3.0e-15 85.1 89 56.2
Sabra14G0090000 Salix brachista HOM05D007627 ORTHO05D009640 3.0e-15 85.1 72 65.3
AUR62044233 Chenopodium quinoa HOM05D007627 ORTHO05D009640 5.1e-15 84.3 79 58.2
Psat3g205400 Pisum sativum HOM05D007627 ORTHO05D009640 6.6e-15 84.0 90 55.6
Gohir.D11G114900 Gossypium hirsutum HOM05D007627 ORTHO05D009640 1.1e-14 83.2 78 64.1
Gorai.007G123100 Gossypium raimondii HOM05D007627 ORTHO05D009640 1.1e-14 83.2 78 64.1
ECA248G3246 Erigeron canadensis HOM05D007627 ORTHO05D009640 3.3e-14 81.6 88 58.0
Ah.10g033580 Amaranthus hybridus HOM05D004014 ORTHO05D005890 4.3e-14 81.3 76 57.9
Gohir.A11G109700 Gossypium hirsutum HOM05D007627 ORTHO05D009640 4.3e-14 81.3 78 62.8
Os06g0717300 Oryza sativa ssp. japonica HOM05D007627 ORTHO05D009640 4.3e-14 81.3 79 55.7
HPP92_022749 Vanilla planifolia HOM05D007627 ORTHO05D009640 4.3e-14 81.3 97 49.5
Aa31LG2G19210 Aethionema arabicum HOM05D007627 ORTHO05D009640 5.6e-14 80.9 75 60.0
Cpa.g.sc18.36 Carica papaya HOM05D007627 ORTHO05D009640 7.3e-14 80.5 85 54.1
COL.COLO4_23238 Corchorus olitorius HOM05D007627 ORTHO05D009640 1.6e-13 79.3 78 59.0
Duzib192G0243 Durio zibethinus HOM05D007627 ORTHO05D009640 1.6e-13 79.3 80 60.0
Zm00001eb228130 Zea mays HOM05D007627 ORTHO05D009640 3.6e-13 78.2 81 50.6
EL10Ac2g03554 Beta vulgaris HOM05D007627 ORTHO05D009640 1.1e-12 76.6 74 58.1
Medtr7g007300 Medicago truncatula HOM05D000007 ORTHO05D000017 3.1e-12 75.1 67 61.2
Aqoxy1G00002 Aquilegia oxysepala HOM05D007627 ORTHO05D009640 6.9e-12 73.9 74 56.8
Lsat_1_v5_gn_5_191420 Lactuca sativa HOM05D007627 ORTHO05D009640 9.0e-12 73.6 75 58.7
BcaC08g42976 Brassica carinata HOM05D007627 ORTHO05D009640 2.0e-11 72.4 90 47.8
ATR0807G116 Amborella trichopoda HOM05D007627 ORTHO05D009640 9.9e-11 70.1 83 54.2
BcaB07g33814 Brassica carinata HOM05D007627 ORTHO05D009640 9.9e-11 70.1 90 46.7
CARHR037420 Cardamine hirsuta HOM05D007627 ORTHO05D009640 2.2e-10 68.9 81 50.6
CDE04G1409 Ceratophyllum demersum HOM05D000443 ORTHO05D001066 3.8e-10 68.2 77 51.9
Thhalv10011898m.g Eutrema salsugineum HOM05D007627 ORTHO05D009640 6.4e-10 67.4 90 44.4
Sp1g34810 Schrenkiella parvula HOM05D007627 ORTHO05D009640 6.4e-10 67.4 75 50.7
AT1G47820 Arabidopsis thaliana HOM05D007627 ORTHO05D009640 7.8e-08 60.5 81 46.9
PSO700G0179 Papaver somniferum HOM05D007627 ORTHO05D009640 1.3e-07 59.7 58 55.2
ATR0414G001 Amborella trichopoda HOM05D007627 ORTHO05D009640 2.3e-07 58.9 74 48.6
AL1G54240 Arabidopsis lyrata HOM05D007627 ORTHO05D009640 2.3e-07 58.9 78 47.4
THA.LOC104824213 Tarenaya hassleriana HOM05D007627 ORTHO05D009640 5.1e-07 57.8 49 59.2
Carub.0001s3677 Capsella rubella HOM05D007627 ORTHO05D009640 2.5e-06 55.5 80 47.5
Carub.0001s3693 Capsella rubella HOM05D007627 ORTHO05D009640 3.3e-06 55.1 79 46.8
SHI28956 Sapria himalayana HOM05D000002 ORTHO05D000001 3.3e-06 55.1 61 47.5


User provided reference genes

Program Settings