Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 5.2e-53 211.1 129 100.0
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 5.2e-53 211.1 129 100.0
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 1.1e-52 209.9 129 96.1
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 5.3e-50 201.1 129 82.2
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 5.3e-50 201.1 129 82.2
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 1.7e-48 196.1 129 79.1
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 1.1e-47 193.4 128 78.9
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 1.9e-47 192.6 129 79.1
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 8.0e-46 187.2 129 76.0
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 1.8e-45 186.0 129 76.0
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 3.0e-45 185.3 129 76.7
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 4.0e-45 184.9 127 75.6
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 5.2e-45 184.5 127 75.6
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 6.7e-45 184.1 129 76.7
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 1.2e-44 183.3 127 75.6
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 1.5e-44 183.0 125 76.0
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 1.5e-44 183.0 129 76.7
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 5.7e-44 181.0 127 74.0
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 5.7e-44 181.0 129 76.0
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 5.7e-44 181.0 129 76.0
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 1.7e-43 179.5 122 76.2
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 2.2e-43 179.1 129 74.4
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 2.2e-43 179.1 129 75.2
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 2.2e-43 179.1 129 75.2
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 2.2e-43 179.1 129 75.2
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 2.8e-43 178.7 129 74.4
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 2.8e-43 178.7 129 74.4
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 2.8e-43 178.7 129 74.4
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 3.7e-43 178.3 129 74.4
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 4.8e-43 177.9 129 73.6
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 6.3e-43 177.6 128 71.9
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 6.3e-43 177.6 127 73.2
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 6.3e-43 177.6 129 72.9
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 8.2e-43 177.2 129 73.6
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 8.2e-43 177.2 129 72.9
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 1.1e-42 176.8 129 72.9
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 1.1e-42 176.8 129 72.9
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 1.4e-42 176.4 129 72.9
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 1.4e-42 176.4 129 74.4
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 1.4e-42 176.4 129 71.3
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 1.8e-42 176.0 129 72.9
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 1.8e-42 176.0 122 76.2
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 1.8e-42 176.0 125 72.8
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 1.8e-42 176.0 129 73.6
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 1.8e-42 176.0 129 74.4
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 2.4e-42 175.6 129 73.6
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.4e-42 175.6 129 72.1
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 3.1e-42 175.3 129 72.1
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.1e-42 175.3 129 72.1
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 3.1e-42 175.3 129 86.0
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 3.1e-42 175.3 129 72.9
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 4.1e-42 174.9 129 72.1
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 4.1e-42 174.9 129 72.1
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 5.3e-42 174.5 129 72.1
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 5.3e-42 174.5 129 72.1
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 5.3e-42 174.5 129 72.1
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 5.3e-42 174.5 129 72.9
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 5.3e-42 174.5 129 72.1
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 7.0e-42 174.1 129 73.6
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 7.0e-42 174.1 129 73.6
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 7.0e-42 174.1 122 73.8
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 9.1e-42 173.7 128 69.5
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 9.1e-42 173.7 129 72.1
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 9.1e-42 173.7 129 71.3
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 9.1e-42 173.7 131 69.5
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.2e-41 173.3 129 71.3
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.2e-41 173.3 129 71.3
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 1.2e-41 173.3 123 71.5
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 1.6e-41 172.9 129 71.3
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 2.0e-41 172.6 128 68.8
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 2.0e-41 172.6 129 71.3
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 2.7e-41 172.2 129 69.0
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 3.5e-41 171.8 129 70.5
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 4.5e-41 171.4 131 67.9
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 4.5e-41 171.4 129 69.8
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 5.9e-41 171.0 127 68.5
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 5.9e-41 171.0 129 69.8
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 5.9e-41 171.0 128 71.9
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 7.7e-41 170.6 129 75.2
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 7.7e-41 170.6 129 71.3
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 1.0e-40 170.2 131 66.4
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 1.0e-40 170.2 131 66.4
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 1.7e-40 169.5 128 66.4
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 1.7e-40 169.5 129 68.2
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 1.7e-40 169.5 129 70.5
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 2.2e-40 169.1 128 66.4
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 2.2e-40 169.1 127 66.1
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 2.2e-40 169.1 127 66.1
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 2.2e-40 169.1 131 67.9
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 2.2e-40 169.1 129 71.3
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 2.9e-40 168.7 131 65.6
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 8.5e-40 167.2 129 67.4
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 8.5e-40 167.2 129 68.2
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 8.5e-40 167.2 129 69.8
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 2.5e-39 165.6 129 73.6
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 2.5e-39 165.6 122 68.9
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 2.5e-39 165.6 129 66.7
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 3.2e-39 165.2 129 80.6
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 3.2e-39 165.2 129 69.0
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 4.2e-39 164.9 129 67.4
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 4.2e-39 164.9 129 65.1
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 5.5e-39 164.5 129 66.7
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 1.6e-38 162.9 119 68.9
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 1.6e-38 162.9 119 68.9
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 2.7e-38 162.2 129 66.7
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 2.7e-38 162.2 129 66.7
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 3.6e-38 161.8 119 68.1
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 4.7e-38 161.4 129 75.2
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 4.7e-38 161.4 129 76.0
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 1.8e-37 159.5 129 74.4
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 1.2e-36 156.8 129 74.4
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 1.5e-36 156.4 152 55.3
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 1.5e-36 156.4 129 62.8
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 1.5e-36 156.4 129 65.1
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 9.1e-34 147.1 129 71.3
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 2.7e-33 145.6 154 56.5
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 5.0e-32 141.4 129 70.5
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 9.5e-31 137.1 122 58.2
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 1.2e-30 136.7 129 67.4
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 2.8e-30 135.6 130 68.5
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 1.2e-28 130.2 81 77.8
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 5.0e-24 114.8 87 71.3
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 1.2e-22 110.2 88 65.9
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 8.0e-22 107.5 87 65.5
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 2.6e-20 102.4 121 44.6
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 4.4e-20 101.7 87 60.9
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 2.3e-16 89.4 121 41.3
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 4.7e-14 81.6 121 38.0
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 4.9e-11 71.6 46 76.1
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 9.2e-10 67.4 57 66.7
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.6e-09 66.6 61 55.7
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 7.8e-09 64.3 35 85.7
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 5.0e-08 61.6 32 87.5
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 9.5e-07 57.4 38 71.1


User provided reference genes

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