Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g040630 Solanum pennellii HOM05D006718 ORTHO05D008492 0.0e+00 1266.5 695 100.0
Solyc01g096920.3 Solanum lycopersicum HOM05D006718 ORTHO05D008492 0.0e+00 1227.6 695 96.8
PGSC0003DMG400027524 Solanum tuberosum HOM05D006718 ORTHO05D008492 0.0e+00 1151.7 696 92.1
CAN.G134.56 Capsicum annuum HOM05D006718 ORTHO05D008492 4.2e-250 868.2 684 75.7
Nitab4.5_0001611g0090 Nicotiana tabacum HOM05D006718 ORTHO05D008492 6.5e-235 817.8 704 70.3
Peaxi162Scf00647g00315 Petunia axillaris HOM05D006718 ORTHO05D008492 2.4e-221 772.7 688 69.8
Nitab4.5_0005056g0030 Nicotiana tabacum HOM05D006718 ORTHO05D008492 5.8e-183 645.2 723 59.9
Dinv24591 Davidia involucrata HOM05D006718 ORTHO05D008492 1.6e-63 248.4 719 34.2
TWI38G0042 Tripterygium wilfordii HOM05D006718 ORTHO05D008492 8.1e-52 209.5 551 34.7
Hund06826 Selenicereus undatus HOM05D006718 ORTHO05D008492 2.3e-51 208.0 515 36.5
MSTRG.5086 Avicennia marina HOM05D006718 ORTHO05D008492 8.9e-51 206.1 516 37.2
SGA_v2.0_scaffold196G40987 Striga asiatica HOM05D006718 ORTHO05D008492 4.4e-50 203.8 502 36.9
CiPaw.13G047100 Carya illinoinensis HOM05D006718 ORTHO05D008492 1.3e-49 202.2 437 42.6
Atru.chr12.1182 Acer truncatum HOM05D006718 ORTHO05D008492 9.2e-48 196.1 320 41.9
TAR369G0954 Trochodendron aralioides HOM05D006718 ORTHO05D008492 7.8e-47 193.0 438 37.7
Lj7A493G35 Lonicera japonica HOM05D006718 ORTHO05D008492 5.1e-46 190.3 292 45.2
AUR62014308 Chenopodium quinoa HOM05D006718 ORTHO05D008492 3.3e-45 187.6 566 35.5
MD02G1263300 Malus domestica HOM05D006718 ORTHO05D008492 4.3e-45 187.2 545 34.1
QL04p050382 Quercus lobata HOM05D006718 ORTHO05D008492 5.6e-45 186.8 572 36.4
Gohir.A06G171400 Gossypium hirsutum HOM05D006718 ORTHO05D008492 2.1e-44 184.9 458 36.9
Cc02_g32070 Coffea canephora HOM05D006718 ORTHO05D008492 6.2e-44 183.3 349 41.8
Haze_03406 Corylus avellana HOM05D006718 ORTHO05D008492 6.2e-44 183.3 689 32.9
Gohir.D06G179500 Gossypium hirsutum HOM05D006718 ORTHO05D008492 4.0e-43 180.6 460 36.5
Gorai.010G210100 Gossypium raimondii HOM05D006718 ORTHO05D008492 6.9e-43 179.9 460 36.5
Thecc.10G129200 Theobroma cacao HOM05D006718 ORTHO05D008492 6.9e-43 179.9 504 34.1
AUR62034103 Chenopodium quinoa HOM05D006718 ORTHO05D008492 1.2e-42 179.1 531 33.9
Sc09g0004890 Simmondsia chinensis HOM05D006718 ORTHO05D008492 1.5e-42 178.7 682 30.8
DCAR_006628 Daucus carota HOM05D006718 ORTHO05D008492 2.6e-42 177.9 235 50.2
Manes.07G082900 Manihot esculenta HOM05D006718 ORTHO05D008492 2.2e-41 174.9 517 33.5
SalBow4G0879 Salvia bowleyana HOM05D006718 ORTHO05D008492 3.8e-41 174.1 663 30.0
Cfa010452 Carpinus fangiana HOM05D006718 ORTHO05D008492 6.4e-41 173.3 623 32.9
CSS0042038 Camellia sinensis var. sinensis HOM05D006718 ORTHO05D008492 1.1e-40 172.6 233 47.6
unitig_899.g15585 Utricularia gibba HOM05D006718 ORTHO05D008492 2.4e-40 171.4 372 38.7
EL10Ac4g08778 Beta vulgaris HOM05D006718 ORTHO05D008492 4.2e-40 170.6 642 31.6
MD07G1054700 Malus domestica HOM05D006718 ORTHO05D008492 4.2e-40 170.6 584 33.4
Migut.O00435 Erythranthe guttata HOM05D006718 ORTHO05D008492 5.4e-40 170.2 655 29.5
Nn2g14019 Nelumbo nucifera HOM05D006718 ORTHO05D008492 2.1e-39 168.3 699 31.3
Prupe.2G061400 Prunus persica HOM05D006718 ORTHO05D008492 2.1e-39 168.3 673 31.8
MBI15_g36944_MAGBIO Magnolia biondii HOM05D006718 ORTHO05D008492 1.3e-38 165.6 474 34.8
RcHm_v2.0_Chr3g0490591 Rosa chinensis HOM05D006718 ORTHO05D008492 1.3e-38 165.6 606 35.3
Duzib128G0030 Durio zibethinus HOM05D006718 ORTHO05D008492 3.9e-38 164.1 337 38.9
Migut.N01880 Erythranthe guttata HOM05D006718 ORTHO05D008492 9.6e-37 159.5 224 44.6
Ah.06g191200 Amaranthus hybridus HOM05D006718 ORTHO05D008492 2.1e-36 158.3 495 31.7
Eucgr.J00311 Eucalyptus grandis HOM05D006718 ORTHO05D008492 4.8e-36 157.1 515 32.8
FAN23G2020 Fragaria x ananassa HOM05D006718 ORTHO05D008492 2.4e-35 154.8 542 36.0
CsaV3_6G004530 Cucumis sativus L. HOM05D006718 ORTHO05D008492 3.1e-35 154.5 519 35.8
COL.COLO4_28900 Corchorus olitorius HOM05D006718 ORTHO05D008492 1.2e-34 152.5 201 47.3
MELO3C019922.2 Cucumis melo HOM05D006718 ORTHO05D008492 1.5e-34 152.1 584 32.0
CANSAT56G0860 Cannabis sativa HOM05D006718 ORTHO05D008492 2.0e-34 151.8 594 32.7
ClCG08G008520 Citrullus lanatus HOM05D006718 ORTHO05D008492 2.0e-34 151.8 585 31.6
FAN28G2084 Fragaria x ananassa HOM05D006718 ORTHO05D008492 2.0e-34 151.8 573 34.7
AT5G18440 Arabidopsis thaliana HOM05D006718 ORTHO05D008492 5.8e-34 150.2 394 34.8
PGR044G1203 Punica granatum HOM05D006718 ORTHO05D008492 7.6e-34 149.8 566 33.9
THA.LOC104811338 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 9.9e-34 149.4 454 32.8
PSO339G3483 Papaver somniferum HOM05D006718 ORTHO05D008492 6.4e-33 146.7 579 33.0
Glyma.14G084400 Glycine max HOM05D006718 ORTHO05D008492 1.1e-32 146.0 622 30.9
Lalb_Chr25g0284721 Lupinus albus HOM05D006718 ORTHO05D008492 3.2e-32 144.4 593 32.0
FvH4_1g30390 Fragaria vesca HOM05D006718 ORTHO05D008492 5.4e-32 143.7 597 34.3
FAN19G2415 Fragaria x ananassa HOM05D006718 ORTHO05D008492 5.4e-32 143.7 631 33.0
Ciclev10015184m.g Citrus clementina HOM05D006718 ORTHO05D008492 9.3e-32 142.9 473 34.0
ECA232G4797 Erigeron canadensis HOM05D006718 ORTHO05D008492 9.3e-32 142.9 616 31.8
HanXRQChr09g0250361 Helianthus annuus HOM05D006718 ORTHO05D008492 9.3e-32 142.9 468 32.9
Sed0008467 Sechium edule HOM05D006718 ORTHO05D008492 9.3e-32 142.9 577 34.3
AL6G29690 Arabidopsis lyrata HOM05D006718 ORTHO05D008492 2.1e-31 141.7 478 30.1
Thhalv10013325m.g Eutrema salsugineum HOM05D006718 ORTHO05D008492 3.5e-31 141.0 353 36.5
Carub.0006s1670 Capsella rubella HOM05D006718 ORTHO05D008492 7.9e-31 139.8 487 30.4
C09p58250 Brassica napus HOM05D006718 ORTHO05D008492 1.0e-30 139.4 363 33.6
PSO384G1654 Papaver somniferum HOM05D006718 ORTHO05D008492 2.3e-30 138.3 576 31.6
GSVIVG01027215001 Vitis vinifera HOM05D006718 ORTHO05D008492 3.9e-30 137.5 422 35.1
A10p21140 Brassica napus HOM05D006718 ORTHO05D008492 1.1e-29 136.0 430 31.6
VMungo0647G0438 Vigna mungo HOM05D006718 ORTHO05D008492 1.5e-29 135.6 505 31.1
BcaC04g18692 Brassica carinata HOM05D006718 ORTHO05D008492 2.5e-29 134.8 267 38.6
Glyma.17G240500 Glycine max HOM05D006718 ORTHO05D008492 3.3e-29 134.4 615 29.8
Phvul.011G216700 Phaseolus vulgaris HOM05D006718 ORTHO05D008492 3.3e-29 134.4 651 30.7
HPP92_007508 Vanilla planifolia HOM05D006718 ORTHO05D008492 3.3e-29 134.4 267 39.7
BcaB08g36679 Brassica carinata HOM05D006718 ORTHO05D008492 4.3e-29 134.0 473 31.3
BolC9t58690H Brassica oleracea HOM05D006718 ORTHO05D008492 4.3e-29 134.0 458 31.9
Os01g0814000 Oryza sativa ssp. japonica HOM05D006718 ORTHO05D008492 4.3e-29 134.0 266 35.3
Sp6g25880 Schrenkiella parvula HOM05D006718 ORTHO05D008492 5.6e-29 133.7 529 29.9
Lj3g0008993 Lotus japonicus HOM05D006718 ORTHO05D008492 7.4e-29 133.3 338 36.4
BraA10t44177Z Brassica rapa HOM05D006718 ORTHO05D008492 1.3e-28 132.5 240 38.8
Ca_03601_v3 Cicer arietinum L. HOM05D006718 ORTHO05D008492 2.1e-28 131.7 575 29.4
ATR0068G071 Amborella trichopoda HOM05D006718 ORTHO05D008492 4.8e-28 130.6 375 37.9
Peaxi162Scf00558g00016 Petunia axillaris HOM05D006718 ORTHO05D008492 4.8e-28 130.6 208 44.2
vmacro20846 Vaccinium macrocarpon HOM05D006718 ORTHO05D008492 1.1e-27 129.4 447 33.6
Zm00001eb149940 Zea mays HOM05D006718 ORTHO05D008492 6.9e-27 126.7 286 33.6
Aqoxy1G00086 Aquilegia oxysepala HOM05D006718 ORTHO05D008492 1.2e-26 125.9 627 29.2
CARHR194580 Cardamine hirsuta HOM05D006718 ORTHO05D008492 1.3e-25 122.5 376 33.2
TPR.G33809 Trifolium pratense HOM05D006718 ORTHO05D008492 2.9e-25 121.3 229 40.2
Aa31LG11G11170 Aethionema arabicum HOM05D006718 ORTHO05D008492 3.8e-25 120.9 536 31.0
Sabra10G0192200 Salix brachista HOM05D006718 ORTHO05D008492 6.4e-25 120.2 674 29.7
Potri.010G246500 Populus trichocarpa HOM05D006718 ORTHO05D008492 9.3e-24 116.3 669 30.0
Lsat_1_v5_gn_4_139420 Lactuca sativa HOM05D006718 ORTHO05D008492 3.5e-23 114.4 635 29.3
Rhsim01G0121600 Rhododendron simsii HOM05D006718 ORTHO05D008492 7.9e-23 113.2 536 32.5
Potri.008G012250 Populus trichocarpa HOM05D006718 ORTHO05D008492 1.8e-22 112.1 321 38.6
Medtr2g067220 Medicago truncatula HOM05D006718 ORTHO05D008492 2.3e-22 111.7 441 29.5
Sabra08G0007500 Salix brachista HOM05D006718 ORTHO05D008492 3.0e-22 111.3 666 31.5
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 4.8e-20 104.0 558 29.7
FAN26G3384 Fragaria x ananassa HOM05D006718 ORTHO05D008492 1.8e-19 102.1 493 31.2
Cpa.g.sc163.26 Carica papaya HOM05D006718 ORTHO05D008492 1.7e-17 95.5 220 35.5
CDE04G2801 Ceratophyllum demersum HOM05D001339 ORTHO05D003609 2.4e-11 75.1 550 26.7
CSS0030010 Camellia sinensis var. sinensis HOM05D006718 ORTHO05D008492 4.5e-10 70.9 290 32.4
A02p04900 Brassica napus HOM05D006718 ORTHO05D008492 7.6e-10 70.1 432 25.9
Pp3c27_4140 Physcomitrium patens HOM05D006718 ORTHO05D008492 1.0e-09 69.7 82 47.6
Oeu051588.1 Olea europaea HOM05D054970 ORTHO05D049444 6.5e-09 67.0 238 32.4
Migut.N01879 Erythranthe guttata HOM05D006718 ORTHO05D008492 6.1e-07 60.5 278 32.4
AagrBONN_evm.TU.Sc2ySwM_344.1162 Anthoceros agrestis HOM05D006718 ORTHO05D008492 1.3e-06 59.3 315 26.3
Mapoly0025s0136 Marchantia polymorpha HOM05D006718 ORTHO05D008492 2.3e-06 58.5 339 24.8


User provided reference genes

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