Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 5.9e-197 690.6 343 100.0
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 7.5e-184 647.1 343 93.9
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 4.0e-145 518.5 353 76.8
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 1.9e-131 473.0 354 73.4
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 2.5e-131 472.6 355 71.8
Solyc01g096620.4 Solanum lycopersicum HOM05D007266 ORTHO05D005982 4.3e-107 392.1 194 96.9
Peaxi162Scf00220g00314 Petunia axillaris HOM05D007266 ORTHO05D005982 2.0e-72 276.9 206 70.4
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 5.2e-60 235.7 124 96.0
Peaxi162Scf00220g00313 Petunia axillaris HOM05D007266 ORTHO05D005982 9.8e-51 204.9 146 73.3
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 4.3e-30 136.3 317 33.8
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 6.8e-28 129.0 380 30.8
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 2.0e-27 127.5 345 32.5
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 9.9e-27 125.2 370 31.1
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 1.3e-26 124.8 339 32.2
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 1.3e-26 124.8 321 32.7
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 2.9e-26 123.6 361 31.6
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 1.9e-25 120.9 342 32.5
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 4.2e-25 119.8 348 31.3
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 7.1e-25 119.0 361 31.9
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 9.3e-25 118.6 351 31.6
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.2e-24 118.2 349 31.5
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.6e-24 117.9 350 30.6
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 2.1e-24 117.5 355 31.0
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 4.6e-24 116.3 359 32.3
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 6.0e-24 115.9 339 30.7
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 7.8e-24 115.5 364 31.0
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 7.8e-24 115.5 365 32.3
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 1.0e-23 115.2 336 30.1
Potri.001G031800 Populus trichocarpa HOM05D007266 ORTHO05D005982 1.0e-23 115.2 324 30.6
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 1.3e-23 114.8 334 31.1
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 1.7e-23 114.4 305 31.8
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 3.0e-23 113.6 374 31.3
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 6.6e-23 112.5 337 33.2
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 8.7e-23 112.1 214 37.9
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 2.5e-22 110.5 322 31.4
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 3.3e-22 110.2 355 29.3
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 1.3e-21 108.2 371 27.8
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 2.1e-21 107.5 341 29.3
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 2.8e-21 107.1 350 32.0
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 2.8e-21 107.1 318 28.9
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 4.8e-21 106.3 206 39.8
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 9.0e-20 102.1 331 30.5
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 1.5e-19 101.3 342 28.9
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 4.4e-19 99.8 217 35.5
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 3.8e-18 96.7 321 27.7
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 6.4e-18 95.9 306 28.4
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 1.4e-17 94.7 361 28.5
TWI63G1068 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 5.4e-17 92.8 278 30.9
Lsat_1_v5_gn_1_118261 Lactuca sativa HOM05D007266 ORTHO05D005982 9.3e-17 92.0 297 30.3
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 2.1e-16 90.9 197 34.0
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 3.5e-16 90.1 358 29.3
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 4.6e-16 89.7 337 28.2
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 4.6e-16 89.7 334 28.4
AUR62032625 Chenopodium quinoa HOM05D007266 ORTHO05D005982 1.0e-15 88.6 321 30.5
SGA_v2.0_scaffold124G33643 Striga asiatica HOM05D007266 ORTHO05D005982 1.5e-14 84.7 363 27.8
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 1.9e-14 84.3 313 25.9
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.5e-14 84.0 110 47.3
Ah.10g030010 Amaranthus hybridus HOM05D007266 ORTHO05D005982 7.3e-14 82.4 329 28.9
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 9.6e-14 82.0 383 26.9
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 9.6e-14 82.0 349 28.4
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 1.3e-13 81.6 432 22.5
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 1.6e-13 81.3 265 28.7
AUR62031740 Chenopodium quinoa HOM05D007266 ORTHO05D005982 1.6e-13 81.3 367 25.9
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 1.6e-13 81.3 323 27.2
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 4.8e-13 79.7 313 27.2
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 4.8e-13 79.7 314 27.1
ECA248G2125 Erigeron canadensis HOM05D007266 ORTHO05D005982 6.2e-13 79.3 256 28.5
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 1.4e-12 78.2 99 44.4
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 1.8e-12 77.8 336 23.2
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 2.4e-12 77.4 319 26.3
PSO135G0681 Papaver somniferum HOM05D007266 ORTHO05D005982 3.1e-12 77.0 218 28.9
CSS0040931 Camellia sinensis var. sinensis HOM05D007266 ORTHO05D005982 4.0e-12 76.6 203 32.0
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 5.3e-12 76.3 331 24.5
Nn7g36823 Nelumbo nucifera HOM05D007266 ORTHO05D005982 5.3e-12 76.3 233 30.9
PSO384G1467 Papaver somniferum HOM05D007266 ORTHO05D005982 5.3e-12 76.3 312 24.7
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 6.9e-12 75.9 207 33.3
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 6.9e-12 75.9 324 29.6
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 6.9e-12 75.9 310 29.0
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 9.0e-12 75.5 341 24.9
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 9.0e-12 75.5 218 33.5
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 2.6e-11 73.9 315 24.8
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 2.6e-11 73.9 315 24.8
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 2.6e-11 73.9 191 31.4
C09p69120 Brassica napus HOM05D008873 ORTHO05D005982 3.4e-11 73.6 326 29.1
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 3.4e-11 73.6 318 26.1
Ah.12g065060 Amaranthus hybridus HOM05D007266 ORTHO05D005982 4.5e-11 73.2 373 27.1
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 4.5e-11 73.2 347 24.5
BolC9t59656H Brassica oleracea HOM05D008873 ORTHO05D005982 7.6e-11 72.4 326 28.8
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 7.6e-11 72.4 117 38.5
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 7.6e-11 72.4 117 38.5
CARHR206160 Cardamine hirsuta HOM05D008873 ORTHO05D005982 9.9e-11 72.0 84 45.2
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 9.9e-11 72.0 317 28.7
BcaNung04207 Brassica carinata HOM05D008873 ORTHO05D005982 1.3e-10 71.6 332 28.3
CARHR086860 Cardamine hirsuta HOM05D008873 ORTHO05D005982 1.3e-10 71.6 218 31.2
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 1.3e-10 71.6 217 32.7
A10p28780 Brassica napus HOM05D008873 ORTHO05D005982 1.7e-10 71.2 326 28.5
BraA10t44925Z Brassica rapa HOM05D008873 ORTHO05D005982 1.7e-10 71.2 326 28.5
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 2.2e-10 70.9 426 22.5
A05p37060 Brassica napus HOM05D008873 ORTHO05D005982 3.8e-10 70.1 219 32.9
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 3.8e-10 70.1 331 27.2
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 4.9e-10 69.7 97 41.2
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 6.4e-10 69.3 219 31.1
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 6.4e-10 69.3 218 31.2
Carub.0006s0591 Capsella rubella HOM05D008873 ORTHO05D005982 6.4e-10 69.3 314 27.4
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 8.4e-10 68.9 243 31.3
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 1.1e-09 68.6 233 27.9
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 1.4e-09 68.2 97 40.2
A03p37600 Brassica napus HOM05D008873 ORTHO05D005982 1.4e-09 68.2 209 29.7
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 2.4e-09 67.4 215 31.2
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 2.4e-09 67.4 215 31.2
C05p55490 Brassica napus HOM05D008873 ORTHO05D005982 3.2e-09 67.0 215 31.2
Carub.0003s1168 Capsella rubella HOM05D008873 ORTHO05D005982 3.2e-09 67.0 210 30.5
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 3.2e-09 67.0 202 31.2
BraA05t22503Z Brassica rapa HOM05D008873 ORTHO05D005982 4.2e-09 66.6 107 43.9
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 4.2e-09 66.6 225 28.9
AL3G23970 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 5.4e-09 66.2 221 29.9
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 5.4e-09 66.2 209 28.7
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 5.4e-09 66.2 209 28.7
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 5.4e-09 66.2 209 28.7
BcaC05g29270 Brassica carinata HOM05D008873 ORTHO05D005982 7.1e-09 65.9 215 30.7
BcaB04g18684 Brassica carinata HOM05D008873 ORTHO05D005982 9.3e-09 65.5 111 39.6
BraA03t12914Z Brassica rapa HOM05D008873 ORTHO05D005982 9.3e-09 65.5 209 28.7
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 9.3e-09 65.5 327 25.7
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 1.2e-08 65.1 310 28.1
Lj3g0005568 Lotus japonicus HOM05D007266 ORTHO05D005982 2.7e-08 63.9 259 29.3
BolC5t34215H Brassica oleracea HOM05D008873 ORTHO05D005982 4.6e-08 63.2 112 40.2
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 1.0e-07 62.0 100 37.0
TAR623G0806 Trochodendron aralioides HOM05D007266 ORTHO05D005982 3.9e-07 60.1 135 36.3
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 5.1e-07 59.7 338 25.4
QL04p021455 Quercus lobata HOM05D007266 ORTHO05D005982 5.1e-07 59.7 194 27.3
QL07p029255 Quercus lobata HOM05D007266 ORTHO05D005982 5.1e-07 59.7 194 27.3
Aa31sc25G30 Aethionema arabicum HOM05D008873 ORTHO05D005982 8.7e-07 58.9 89 41.6
BcaB01g05709 Brassica carinata HOM05D008873 ORTHO05D005982 2.5e-06 57.4 145 31.7
Gohir.A05G280800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 9.6e-06 55.5 91 36.3
Gohir.D05G282800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 9.6e-06 55.5 91 36.3


User provided reference genes

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