Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 7.8e-106 387.1 191 100.0
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 7.8e-106 387.1 191 100.0
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 7.8e-106 387.1 191 100.0
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.2e-103 379.8 188 98.4
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 4.4e-101 371.3 191 94.8
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 9.8e-101 370.2 191 93.2
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.7e-100 369.4 191 93.7
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 2.2e-100 369.0 191 92.7
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 3.7e-100 368.2 191 93.2
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 8.3e-100 367.1 190 92.6
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 1.1e-99 366.7 191 92.1
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 1.4e-99 366.3 191 92.7
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 1.9e-99 365.9 191 92.1
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 2.4e-99 365.5 191 92.1
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 3.2e-99 365.2 191 92.1
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 4.1e-99 364.8 191 92.7
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 5.4e-99 364.4 191 91.1
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 7.0e-99 364.0 189 92.6
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 91.1
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 92.1
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 7.0e-99 364.0 189 92.1
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 91.6
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 9.2e-99 363.6 191 92.1
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 1.2e-98 363.2 191 91.1
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 1.2e-98 363.2 189 92.1
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 1.6e-98 362.8 191 92.1
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 1.6e-98 362.8 191 92.1
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 1.6e-98 362.8 191 90.1
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 2.0e-98 362.5 191 91.6
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 2.0e-98 362.5 191 91.1
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 2.7e-98 362.1 191 92.1
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 2.7e-98 362.1 191 91.6
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 2.7e-98 362.1 191 91.1
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 3.5e-98 361.7 189 92.1
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 3.5e-98 361.7 190 91.6
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 3.5e-98 361.7 190 91.6
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 4.6e-98 361.3 191 91.1
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 4.6e-98 361.3 191 92.1
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 4.6e-98 361.3 189 91.0
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 4.6e-98 361.3 189 91.0
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 4.6e-98 361.3 189 91.0
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 6.0e-98 360.9 191 90.6
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 7.8e-98 360.5 190 92.1
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 1.0e-97 360.1 191 89.5
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 1.0e-97 360.1 191 89.0
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.0e-97 360.1 191 91.1
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 1.0e-97 360.1 191 90.1
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 1.3e-97 359.8 191 90.6
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 1.3e-97 359.8 189 90.5
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 1.7e-97 359.4 191 89.0
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 1.7e-97 359.4 191 90.1
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 1.7e-97 359.4 191 90.1
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 2.3e-97 359.0 189 90.5
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 2.3e-97 359.0 191 91.1
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 2.3e-97 359.0 191 91.1
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 3.0e-97 358.6 191 90.6
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 3.0e-97 358.6 191 91.1
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 3.9e-97 358.2 189 91.5
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 3.9e-97 358.2 191 90.1
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 5.0e-97 357.8 191 88.0
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 6.6e-97 357.5 188 91.0
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 6.6e-97 357.5 191 90.6
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 8.6e-97 357.1 188 90.4
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 1.1e-96 356.7 191 89.0
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 1.9e-96 355.9 191 87.4
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 3.3e-96 355.1 188 89.4
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 4.3e-96 354.8 195 89.7
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 7.3e-96 354.0 191 87.4
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 1.6e-95 352.8 191 88.5
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 1.6e-95 352.8 201 86.1
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 6.2e-95 350.9 189 86.8
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 6.2e-95 350.9 195 87.7
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 8.1e-95 350.5 173 98.8
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.1e-94 350.1 191 86.4
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 1.4e-94 349.7 191 85.9
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 2.3e-94 349.0 189 87.8
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 3.1e-94 348.6 191 85.3
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 4.0e-94 348.2 191 84.8
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 4.0e-94 348.2 191 86.4
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 5.2e-94 347.8 191 85.3
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 5.2e-94 347.8 188 86.2
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 5.2e-94 347.8 188 88.3
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 6.8e-94 347.4 188 86.2
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 6.8e-94 347.4 188 86.2
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 8.9e-94 347.1 210 81.0
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 8.9e-94 347.1 216 80.1
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 1.5e-93 346.3 188 85.6
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 2.6e-93 345.5 188 85.1
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 2.6e-93 345.5 188 88.8
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 5.8e-93 344.4 183 89.6
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 7.5e-93 344.0 188 86.2
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 7.5e-93 344.0 201 84.6
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 4.9e-92 341.3 198 83.3
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 1.1e-91 340.1 191 83.8
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.4e-91 339.0 191 82.2
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 5.4e-91 337.8 232 73.7
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 9.2e-91 337.0 214 78.5
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 6.0e-90 334.3 191 80.6
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 1.7e-89 332.8 189 81.0
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 1.6e-87 326.2 191 78.5
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.8e-87 325.5 189 78.8
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 8.1e-87 323.9 173 89.0
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 5.2e-86 321.2 191 79.6
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 2.0e-85 319.3 181 86.2
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 2.0e-85 319.3 181 86.2
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.7e-84 316.2 188 77.1
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 8.4e-84 313.9 188 76.6
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 5.1e-81 304.7 160 90.6
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 6.6e-81 304.3 167 87.4
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 2.1e-79 299.3 160 87.5
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 4.0e-78 295.0 209 74.2
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 4.0e-78 295.0 160 87.5
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 7.1e-75 284.3 161 85.7
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 4.6e-74 281.6 171 81.3
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 1.2e-66 256.9 188 66.5
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.1e-62 243.8 190 63.2
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 3.1e-62 242.3 140 82.9
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.1e-58 229.6 183 60.1
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.5e-56 222.6 206 52.9
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.3e-55 220.3 113 91.2
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.8e-54 216.5 149 72.5
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 3.1e-54 215.7 109 97.2
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 7.6e-53 211.1 112 90.2
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 6.5e-52 208.0 129 80.6
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 3.2e-51 205.7 109 89.9
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 5.5e-51 204.9 106 87.7
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 8.7e-49 197.6 109 88.1
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.5e-48 196.8 158 62.0
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 1.8e-38 163.3 80 93.8
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 1.8e-38 163.3 82 92.7
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 1.8e-38 163.3 82 91.5
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 2.4e-38 162.9 82 91.5
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.2e-37 160.6 81 90.1
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 2.1e-34 149.8 84 86.9
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 1.0e-33 147.5 81 86.4
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 6.7e-33 144.8 157 45.9
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 1.1e-32 144.1 74 89.2
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 9.7e-32 141.0 71 90.1
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 1.8e-30 136.7 71 88.7
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 5.0e-28 128.6 87 77.0
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 1.6e-26 123.6 68 83.8
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 1.6e-26 123.6 68 83.8
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 4.7e-26 122.1 68 82.4
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 3.6e-18 95.9 51 82.4
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 2.0e-16 90.1 47 83.0
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 6.5e-12 75.1 38 86.8
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 6.5e-12 75.1 38 86.8
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 6.5e-12 75.1 38 86.8
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 6.5e-12 75.1 38 86.8
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 8.5e-12 74.7 37 89.2


User provided reference genes

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