Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 0.0e+00 5117.7 2516 100.0
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 0.0e+00 5030.7 2516 98.3
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 0.0e+00 4549.6 2502 89.6
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 0.0e+00 4268.0 2526 83.7
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 4018.8 2522 79.9
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 2849.3 2561 57.6
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 2705.2 2555 54.6
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 0.0e+00 2635.5 2563 54.6
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2540.8 2505 53.4
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 0.0e+00 2537.7 2552 52.2
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 0.0e+00 2490.7 2537 52.1
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 0.0e+00 2474.9 2574 51.4
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 0.0e+00 2471.8 2619 50.9
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 0.0e+00 2455.6 2565 50.9
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 0.0e+00 2447.9 2578 51.4
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2430.2 2581 50.9
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 0.0e+00 2419.8 2584 50.4
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 0.0e+00 2414.4 2562 50.5
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2409.4 2586 50.2
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 0.0e+00 2407.9 2569 50.4
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2406.3 2584 50.3
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2405.9 2585 50.4
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2405.6 2585 50.4
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2404.4 2593 50.2
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 0.0e+00 2399.8 2584 49.8
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 0.0e+00 2395.5 2571 50.1
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 0.0e+00 2389.8 2655 48.8
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 0.0e+00 2387.1 2557 49.8
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 0.0e+00 2383.2 2555 49.2
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 0.0e+00 2373.6 2578 49.0
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2358.6 2578 49.0
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 0.0e+00 2358.2 2580 49.5
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2354.7 2580 48.8
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 0.0e+00 2313.9 2515 49.6
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 0.0e+00 2300.4 2597 49.1
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 0.0e+00 2293.8 2429 50.7
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 2288.5 1347 84.0
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 0.0e+00 2274.6 2579 47.8
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 0.0e+00 2252.6 2583 47.7
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 0.0e+00 2234.5 2567 47.6
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 0.0e+00 2228.4 2512 48.2
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 0.0e+00 2222.2 2599 47.9
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 2220.7 2576 47.2
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 0.0e+00 2217.2 2567 47.5
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 0.0e+00 2214.1 2579 46.9
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2213.7 2542 46.9
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2209.5 2542 46.9
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 0.0e+00 2197.5 2590 47.1
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 0.0e+00 2196.8 2604 46.7
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 0.0e+00 2179.1 2550 46.4
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 0.0e+00 2162.1 2571 46.7
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 0.0e+00 2157.5 2559 46.9
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2132.8 2561 46.8
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2131.3 2564 46.6
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 0.0e+00 2129.4 2576 46.1
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 0.0e+00 2116.7 2598 45.5
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 0.0e+00 2104.3 2576 45.2
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 0.0e+00 2097.4 2590 45.5
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 0.0e+00 2063.5 2588 44.8
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 2043.5 2566 45.3
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 0.0e+00 2043.1 2406 47.6
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 0.0e+00 2040.8 2578 44.6
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 0.0e+00 2038.5 2519 46.1
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 0.0e+00 2036.9 2540 45.9
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 2034.2 2414 46.8
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 0.0e+00 2031.1 2564 45.2
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 0.0e+00 2016.1 2561 44.5
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 0.0e+00 1991.5 2560 44.3
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 0.0e+00 1987.2 2571 44.1
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 0.0e+00 1981.8 2577 44.3
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 1981.8 2549 44.0
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 0.0e+00 1979.1 2548 44.0
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 1972.2 2548 44.0
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 0.0e+00 1969.1 2549 43.9
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 0.0e+00 1968.4 2561 44.5
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 0.0e+00 1962.6 2573 43.5
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 0.0e+00 1940.6 2562 43.4
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 0.0e+00 1832.4 2563 41.7
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 0.0e+00 1814.7 1941 50.0
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1775.0 1095 80.9
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 0.0e+00 1703.7 2521 40.3
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 0.0e+00 1632.1 2570 38.5
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1585.5 1925 46.4
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 0.0e+00 1564.3 1977 44.4
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 0.0e+00 1500.3 2591 35.9
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 1470.7 1900 43.3
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 0.0e+00 1394.8 1350 53.6
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 0.0e+00 1317.4 1548 48.3
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1305.4 1365 50.4
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 0.0e+00 1300.0 1522 48.4
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 0.0e+00 1288.9 1523 48.0
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1262.7 1339 49.8
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1113.6 1064 54.7
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 1.1e-300 1038.1 1103 50.5
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 1.4e-298 1031.2 1348 43.1
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 2.6e-289 1000.3 1069 49.0
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 2.6e-289 1000.3 1069 49.0
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 3.1e-287 993.4 2745 29.1
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 9.1e-279 965.3 1185 44.6
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 5.2e-266 922.9 1822 35.5
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 2.8e-219 767.7 1613 32.7
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 4.2e-207 727.2 1038 39.9
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 7.1e-207 726.5 492 70.3
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.8e-197 695.3 581 59.9
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 9.0e-194 682.9 1197 35.9
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 1.7e-184 652.1 572 56.1
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 3.2e-183 647.9 562 60.5
Hma1.2p1_0101F.1_g049290 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.9e-175 622.1 548 59.7
Hma1.2p1_0101F.1_g049270 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.5e-167 595.9 691 46.2
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 9.4e-167 593.2 1703 29.5
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 2.6e-161 575.1 1118 35.3
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 3.5e-153 548.1 759 44.1
SMO203G0146 Selaginella moellendorffii HOM05D004435 ORTHO05D005103 5.9e-145 520.8 451 55.7
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 2.4e-138 498.8 459 58.0
Aa31LG1G27950 Aethionema arabicum HOM05D004435 ORTHO05D005103 3.2e-122 445.3 764 35.1
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 3.3e-119 435.3 434 50.9
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 1.5e-116 426.4 294 72.4
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 6.0e-113 414.5 514 49.6
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.0e-112 413.7 948 32.3
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 1.6e-110 406.4 1675 26.2
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 5.6e-103 381.3 182 99.5
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 2.2e-99 369.4 224 77.7
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 7.1e-98 364.4 1327 28.4
FAN01G0536 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.7e-83 316.6 197 78.7
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.9e-74 286.6 230 63.5
Cpa.g.sc96.46 Carica papaya HOM05D004435 ORTHO05D005103 1.8e-72 280.0 349 44.1
Actinidia20096 Actinidia chinensis HOM05D004435 ORTHO05D005103 2.6e-68 266.2 270 52.2
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 1.0e-56 227.6 195 53.8
Aa31LG1G27960 Aethionema arabicum HOM05D004435 ORTHO05D005103 3.0e-56 226.1 217 50.7
Actinidia20091 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.1e-47 197.6 412 34.7
Atru.chr5.691 Acer truncatum HOM05D004435 ORTHO05D005103 5.7e-47 195.3 120 76.7
SEGI_02021 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 3.8e-43 182.6 121 74.4
Nitab4.5_0007244g0040 Nicotiana tabacum HOM05D004435 ORTHO05D005103 7.0e-37 161.8 122 70.5
HanXRQChr10g0310771 Helianthus annuus HOM05D004435 ORTHO05D005103 2.1e-33 150.2 114 64.9
Psat1g001920 Pisum sativum HOM05D004435 ORTHO05D005103 1.4e-32 147.5 223 37.2
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 2.3e-32 146.7 275 33.5
Cpa.g.c42981 Carica papaya HOM05D004435 ORTHO05D005103 5.2e-32 145.6 209 38.3
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 6.3e-30 138.7 522 25.7
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 9.2e-29 134.8 88 79.5
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 2.0e-28 133.7 259 35.9
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 6.6e-27 128.6 163 42.9
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 1.5e-26 127.5 268 32.8
Ca_26677_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 3.3e-26 126.3 75 78.7
Atru.chr5.692 Acer truncatum HOM05D004435 ORTHO05D005103 1.6e-25 124.0 102 59.8
Psat5g173920 Pisum sativum HOM05D004435 ORTHO05D005103 8.0e-25 121.7 200 35.5
Hma1.2p1_0101F.1_g049260 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.4e-24 120.9 102 60.8
FAN10G3206 Fragaria x ananassa HOM05D004435 ORTHO05D005103 3.0e-24 119.8 116 50.9
Psat5g173880 Pisum sativum HOM05D004435 ORTHO05D005103 4.0e-24 119.4 181 36.5
FAN10G3182 Fragaria x ananassa HOM05D004435 ORTHO05D005103 7.5e-23 115.2 116 50.0
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 8.3e-22 111.7 314 30.3
HanXRQChr03g0082981 Helianthus annuus HOM05D004435 ORTHO05D005103 3.2e-21 109.8 120 52.5
Psat2g140840 Pisum sativum HOM05D004435 ORTHO05D005103 5.4e-21 109.0 163 38.0
MapolyY_B0006 Marchantia polymorpha HOM05D004435 ORTHO05D005103 3.0e-19 103.2 297 28.6
MD07G1152500 Malus domestica HOM05D004435 ORTHO05D005103 8.9e-16 91.7 49 83.7
arahy.Tifrunner.gnm1.ann1.63Q0V0 Arachis hypogaea HOM05D008137 ORTHO05D005103 1.0e-11 78.2 108 46.3
BcaNung07057 Brassica carinata HOM05D004435 ORTHO05D005103 8.6e-11 75.1 160 38.1
ATR0028G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 2.5e-10 73.6 513 21.4
SEGI_36456 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 3.6e-09 69.7 112 36.6
Atru.chr5.687 Acer truncatum HOM05D002476 ORTHO05D002652 3.1e-08 66.6 67 58.2
TPR.G40720 Trifolium pratense HOM05D004435 ORTHO05D005103 1.5e-07 64.3 107 34.6


User provided reference genes

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