Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g039810 Solanum pennellii HOM05D007265 ORTHO05D009118 4.8e-58 227.6 117 100.0
Solyc01g096090.4 Solanum lycopersicum HOM05D007265 ORTHO05D009118 3.2e-54 214.9 114 93.9
PGSC0003DMG400000233 Solanum tuberosum HOM05D007265 ORTHO05D009118 2.9e-26 122.1 64 98.4
Nitab4.5_0001763g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 1.4e-25 119.8 66 95.5
CAN.G1415.20 Capsicum annuum HOM05D007265 ORTHO05D009118 9.2e-25 117.1 66 90.9
DCAR_005402 Daucus carota HOM05D007265 ORTHO05D009118 6.6e-23 110.9 66 86.4
Duzib138G0325 Durio zibethinus HOM05D007265 ORTHO05D009118 1.1e-22 110.2 66 87.9
CSS0038215 Camellia sinensis var. sinensis HOM05D007265 ORTHO05D009118 1.5e-22 109.8 66 86.4
DCAR_025264 Daucus carota HOM05D007265 ORTHO05D009118 1.5e-22 109.8 66 87.9
Nn1g00287 Nelumbo nucifera HOM05D007265 ORTHO05D009118 1.5e-22 109.8 64 89.1
Prupe.2G190600 Prunus persica HOM05D007265 ORTHO05D009118 1.9e-22 109.4 63 90.5
Nitab4.5_0000258g0270 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.5e-22 109.0 66 84.8
CiPaw.01G077600 Carya illinoinensis HOM05D007265 ORTHO05D009118 3.3e-22 108.6 64 89.1
Gohir.A11G097900 Gossypium hirsutum HOM05D007265 ORTHO05D009118 4.3e-22 108.2 66 86.4
Gohir.D11G102600 Gossypium hirsutum HOM05D007265 ORTHO05D009118 4.3e-22 108.2 66 86.4
Nitab4.5_0003865g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 4.3e-22 108.2 64 87.5
Hma1.2p1_0390F.1_g142620 Hydrangea macrophylla HOM05D007265 ORTHO05D009118 5.6e-22 107.8 64 89.1
Ciclev10023834m.g Citrus clementina HOM05D007265 ORTHO05D009118 1.2e-21 106.7 65 84.6
MD01G1083600 Malus domestica HOM05D007265 ORTHO05D009118 1.2e-21 106.7 63 88.9
MD07G1152300 Malus domestica HOM05D007265 ORTHO05D009118 1.2e-21 106.7 63 88.9
Lj7E499T0 Lonicera japonica HOM05D007265 ORTHO05D009118 1.6e-21 106.3 66 83.3
Gohir.D12G116700 Gossypium hirsutum HOM05D007265 ORTHO05D009118 2.8e-21 105.5 66 83.3
Cc02_g39560 Coffea canephora HOM05D007265 ORTHO05D009118 4.7e-21 104.8 63 87.3
BcaC02g07039 Brassica carinata HOM05D007265 ORTHO05D009118 6.2e-21 104.4 66 81.8
HanXRQChr03g0093001 Helianthus annuus HOM05D007265 ORTHO05D009118 8.0e-21 104.0 63 84.1
Duzib133G0073 Durio zibethinus HOM05D007265 ORTHO05D009118 1.1e-20 103.6 66 83.3
Gohir.A12G113200 Gossypium hirsutum HOM05D007265 ORTHO05D009118 1.1e-20 103.6 66 81.8
PGR042G1917 Punica granatum HOM05D007265 ORTHO05D009118 1.4e-20 103.2 66 81.8
A04p34450 Brassica napus HOM05D007265 ORTHO05D009118 1.8e-20 102.8 66 80.3
Oeu008708.1 Olea europaea HOM05D007265 ORTHO05D009118 1.8e-20 102.8 64 81.2
Thecc.01G340400 Theobroma cacao HOM05D007265 ORTHO05D009118 1.8e-20 102.8 66 83.3
Atru.chr5.686 Acer truncatum HOM05D007265 ORTHO05D009118 3.1e-20 102.1 63 84.1
ATR0602G127 Amborella trichopoda HOM05D007265 ORTHO05D009118 3.1e-20 102.1 64 82.8
AT2G46540 Arabidopsis thaliana HOM05D007265 ORTHO05D009118 3.1e-20 102.1 66 80.3
Migut.N01534 Erythranthe guttata HOM05D007265 ORTHO05D009118 3.1e-20 102.1 66 78.8
HanXRQChr13g0423241 Helianthus annuus HOM05D007265 ORTHO05D009118 3.1e-20 102.1 64 81.2
Sp4g28590 Schrenkiella parvula HOM05D007265 ORTHO05D009118 3.1e-20 102.1 66 80.3
TAR374G1528 Trochodendron aralioides HOM05D007265 ORTHO05D009118 3.1e-20 102.1 61 86.9
AL4G45970 Arabidopsis lyrata HOM05D007265 ORTHO05D009118 4.0e-20 101.7 66 78.8
BcaC02g12671 Brassica carinata HOM05D007265 ORTHO05D009118 4.0e-20 101.7 64 81.2
BcaC02g12679 Brassica carinata HOM05D007265 ORTHO05D009118 4.0e-20 101.7 64 81.2
C04p01380 Brassica napus HOM05D007265 ORTHO05D009118 4.0e-20 101.7 64 81.2
BolC4t21791H Brassica oleracea HOM05D007265 ORTHO05D009118 4.0e-20 101.7 64 81.2
BraA05t19124Z Brassica rapa HOM05D007265 ORTHO05D009118 4.0e-20 101.7 64 81.2
Carub.0004s2926 Capsella rubella HOM05D007265 ORTHO05D009118 4.0e-20 101.7 64 81.2
GSVIVG01027169001 Vitis vinifera HOM05D007265 ORTHO05D009118 4.0e-20 101.7 66 80.3
Sed0002056 Sechium edule HOM05D007265 ORTHO05D009118 5.2e-20 101.3 63 82.5
THA.LOC104817372 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 5.2e-20 101.3 66 77.3
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 5.2e-20 101.3 65 78.5
BraA04t18903Z Brassica rapa HOM05D007265 ORTHO05D009118 6.8e-20 100.9 66 78.8
Glyma.03G258500 Glycine max HOM05D007265 ORTHO05D009118 1.5e-19 99.8 63 79.4
Glyma.19G257100 Glycine max HOM05D007265 ORTHO05D009118 1.5e-19 99.8 63 79.4
PSO063G4371 Papaver somniferum HOM05D007265 ORTHO05D009118 1.5e-19 99.8 64 79.7
Phvul.006G114500 Phaseolus vulgaris HOM05D007265 ORTHO05D009118 2.0e-19 99.4 63 79.4
PSO170G4391 Papaver somniferum HOM05D007265 ORTHO05D009118 2.6e-19 99.0 64 79.7
arahy.Tifrunner.gnm1.ann1.PH1UFL Arachis hypogaea HOM05D007265 ORTHO05D009118 3.4e-19 98.6 60 83.3
CARHR141880 Cardamine hirsuta HOM05D007265 ORTHO05D009118 3.4e-19 98.6 66 78.8
arahy.Tifrunner.gnm1.ann1.4N8QKH Arachis hypogaea HOM05D007265 ORTHO05D009118 4.4e-19 98.2 61 82.0
THA.LOC104802081 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 4.4e-19 98.2 66 75.8
BolC4t28709H Brassica oleracea HOM05D007265 ORTHO05D009118 7.5e-19 97.4 66 75.8
MELO3C022263.2 Cucumis melo HOM05D007265 ORTHO05D009118 7.5e-19 97.4 63 79.4
Aqoxy5G04249 Aquilegia oxysepala HOM05D007265 ORTHO05D009118 9.8e-19 97.1 61 82.0
Potri.002G173101 Populus trichocarpa HOM05D007265 ORTHO05D009118 9.8e-19 97.1 68 77.9
CsaV3_6G008500 Cucumis sativus L. HOM05D007265 ORTHO05D009118 1.3e-18 96.7 63 79.4
CANSAT56G3703 Cannabis sativa HOM05D007265 ORTHO05D009118 1.7e-18 96.3 63 76.2
Medtr7g117700 Medicago truncatula HOM05D007265 ORTHO05D009118 2.2e-18 95.9 63 76.2
Ca_09518_v3 Cicer arietinum L. HOM05D007265 ORTHO05D009118 2.9e-18 95.5 63 74.6
HanXRQChr16g0521331 Helianthus annuus HOM05D007265 ORTHO05D009118 2.9e-18 95.5 64 76.6
Lalb_Chr18g0044541 Lupinus albus HOM05D007265 ORTHO05D009118 2.9e-18 95.5 63 77.8
Os05g0542100 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 2.9e-18 95.5 64 73.4
Sabra02G0140200 Salix brachista HOM05D007265 ORTHO05D009118 3.7e-18 95.1 68 75.0
Lj1g0009143 Lotus japonicus HOM05D007265 ORTHO05D009118 4.9e-18 94.7 63 74.6
Lalb_Chr15g0076341 Lupinus albus HOM05D007265 ORTHO05D009118 8.3e-18 94.0 63 76.2
Nn3g18955 Nelumbo nucifera HOM05D007265 ORTHO05D009118 1.1e-17 93.6 64 81.2
Lsat_1_v5_gn_3_126500 Lactuca sativa HOM05D007265 ORTHO05D009118 1.4e-17 93.2 57 82.5
TWI59G0786 Tripterygium wilfordii HOM05D007265 ORTHO05D009118 2.4e-17 92.4 63 76.2
Manes.01G244801 Manihot esculenta HOM05D007265 ORTHO05D009118 4.1e-17 91.7 63 76.2
Oeu007878.1 Olea europaea HOM05D007265 ORTHO05D009118 7.0e-17 90.9 55 87.3
BcaC02g07016 Brassica carinata HOM05D007265 ORTHO05D009118 1.2e-16 90.1 58 79.3
vmacro13170 Vaccinium macrocarpon HOM05D007265 ORTHO05D009118 1.2e-16 90.1 58 81.0
Manes.05G021500 Manihot esculenta HOM05D007265 ORTHO05D009118 2.7e-16 89.0 63 74.6
Gorai.008G126400 Gossypium raimondii HOM05D007265 ORTHO05D009118 4.6e-16 88.2 55 81.8
MBI07_g24775_MAGBIO Magnolia biondii HOM05D007265 ORTHO05D009118 4.6e-16 88.2 60 76.7
Rhsim01G0174400 Rhododendron simsii HOM05D007265 ORTHO05D009118 4.6e-16 88.2 82 63.4
Lsat_1_v5_gn_4_39661 Lactuca sativa HOM05D007265 ORTHO05D009118 7.8e-16 87.4 58 75.9
Hund16719 Selenicereus undatus HOM05D007265 ORTHO05D009118 7.8e-16 87.4 81 59.3
SalBow5G3999 Salvia bowleyana HOM05D002476 ORTHO05D002652 1.0e-15 87.0 56 82.1
A05p01230 Brassica napus HOM05D007265 ORTHO05D009118 1.7e-15 86.3 55 81.8
ClCG06G002640 Citrullus lanatus HOM05D007265 ORTHO05D009118 2.3e-15 85.9 56 76.8
COL.COLO4_06226 Corchorus olitorius HOM05D007265 ORTHO05D009118 3.0e-15 85.5 54 85.2
Os01g0705500 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 3.0e-15 85.5 48 87.5
Psat3g174080 Pisum sativum HOM05D007265 ORTHO05D009118 3.9e-15 85.1 57 75.4
Sc01g0002550 Simmondsia chinensis HOM05D007265 ORTHO05D009118 3.9e-15 85.1 57 73.7
EL10Ac1g00247 Beta vulgaris HOM05D007265 ORTHO05D009118 5.1e-15 84.7 55 74.5
Hund27188 Selenicereus undatus HOM05D007265 ORTHO05D009118 8.6e-15 84.0 57 75.4
Gorai.007G109700 Gossypium raimondii HOM05D007265 ORTHO05D009118 1.5e-14 83.2 50 86.0
Psat3g001880 Pisum sativum HOM05D007265 ORTHO05D009118 2.5e-14 82.4 52 78.8
Aa31LG1G27910 Aethionema arabicum HOM05D007265 ORTHO05D009118 3.3e-14 82.0 54 75.9
MSTRG.17355 Avicennia marina HOM05D007265 ORTHO05D009118 4.3e-14 81.6 55 78.2
Thhalv10001742m.g Eutrema salsugineum HOM05D007265 ORTHO05D009118 5.6e-14 81.3 115 47.0
BcaNung06658 Brassica carinata HOM05D007265 ORTHO05D009118 7.3e-14 80.9 49 83.7
Ah.05g179400 Amaranthus hybridus HOM05D007265 ORTHO05D009118 6.2e-13 77.8 57 70.2
AUR62004508 Chenopodium quinoa HOM05D007265 ORTHO05D009118 6.2e-13 77.8 54 70.4
SGA_v2.0_scaffold232G43548 Striga asiatica HOM05D007265 ORTHO05D009118 3.7e-10 68.6 39 89.7
Nitab4.5_0010712g0030 Nicotiana tabacum HOM05D007265 ORTHO05D009118 6.4e-10 67.8 37 91.9
RcHm_v2.0_Chr1g0360081 Rosa chinensis HOM05D000497 ORTHO05D013080 3.2e-09 65.5 37 86.5
TAR375G0162 Trochodendron aralioides HOM05D007265 ORTHO05D009118 8.6e-07 57.4 46 73.9
AUR62016412 Chenopodium quinoa HOM05D007265 ORTHO05D009118 9.5e-06 53.9 63 47.6


User provided reference genes

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