Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g039750 Solanum pennellii HOM05D006438 ORTHO05D007998 0.0e+00 1272.7 669 100.0
Solyc01g096030.4 Solanum lycopersicum HOM05D006438 ORTHO05D007998 0.0e+00 1257.7 669 99.1
PGSC0003DMG400000230 Solanum tuberosum HOM05D006438 ORTHO05D007998 0.0e+00 1247.3 669 97.5
CAN.G1415.26 Capsicum annuum HOM05D006438 ORTHO05D007998 0.0e+00 1139.0 669 89.5
Nitab4.5_0013402g0010 Nicotiana tabacum HOM05D006438 ORTHO05D007998 0.0e+00 1095.1 670 86.4
Peaxi162Scf00786g00012 Petunia axillaris HOM05D006438 ORTHO05D007998 0.0e+00 1095.1 668 86.2
Nitab4.5_0000172g0480 Nicotiana tabacum HOM05D006438 ORTHO05D007998 0.0e+00 1088.6 670 86.0
Dinv32596 Davidia involucrata HOM05D006438 ORTHO05D007998 2.0e-241 839.3 671 67.8
Actinidia20246 Actinidia chinensis HOM05D006438 ORTHO05D007998 1.9e-239 832.8 669 67.3
Lj7A500T115 Lonicera japonica HOM05D006438 ORTHO05D007998 1.0e-237 827.0 679 67.2
MSTRG.17348 Avicennia marina HOM05D006438 ORTHO05D007998 2.1e-235 819.3 670 66.6
Migut.B01878 Erythranthe guttata HOM05D006438 ORTHO05D007998 3.1e-234 815.5 675 67.6
CiPaw.02G041100 Carya illinoinensis HOM05D006438 ORTHO05D007998 9.0e-234 813.9 674 65.9
vmacro13165 Vaccinium macrocarpon HOM05D006438 ORTHO05D007998 1.5e-233 813.1 671 65.1
CSS0017951 Camellia sinensis var. sinensis HOM05D006438 ORTHO05D007998 1.3e-227 793.5 671 65.1
CSS0029538 Camellia sinensis var. sinensis HOM05D006438 ORTHO05D007998 2.1e-227 792.7 671 64.8
SalBow3G2635 Salvia bowleyana HOM05D006438 ORTHO05D007998 2.1e-227 792.7 672 64.4
Prupe.2G189300 Prunus persica HOM05D006438 ORTHO05D007998 1.1e-226 790.4 667 64.2
Rhsim07G0003900 Rhododendron simsii HOM05D006438 ORTHO05D007998 3.1e-226 788.9 674 64.4
Hund27192 Selenicereus undatus HOM05D006438 ORTHO05D007998 5.0e-224 781.6 673 63.2
DCAR_005393 Daucus carota HOM05D006438 ORTHO05D007998 1.1e-223 780.4 670 63.7
QL11p022848 Quercus lobata HOM05D006438 ORTHO05D007998 3.9e-221 771.9 673 63.6
QL06p050047 Quercus lobata HOM05D006438 ORTHO05D007998 8.7e-221 770.8 673 63.6
SGA_v2.0_scaffold5G03022 Striga asiatica HOM05D006438 ORTHO05D007998 1.9e-220 769.6 672 62.2
Manes.13G078900 Manihot esculenta HOM05D006438 ORTHO05D007998 4.3e-220 768.5 674 63.9
Duzib138G1266 Durio zibethinus HOM05D006438 ORTHO05D007998 6.3e-219 764.6 698 62.5
TWI59G0942 Tripterygium wilfordii HOM05D006438 ORTHO05D007998 6.3e-219 764.6 681 62.6
Sc23g0002070 Simmondsia chinensis HOM05D006438 ORTHO05D007998 1.4e-218 763.5 676 62.1
EL10Ac1g00261 Beta vulgaris HOM05D006438 ORTHO05D007998 1.5e-217 760.0 673 61.2
FvH4_7g16650 Fragaria vesca HOM05D006438 ORTHO05D007998 1.5e-217 760.0 670 62.4
Thecc.01G341800 Theobroma cacao HOM05D006438 ORTHO05D007998 1.5e-217 760.0 699 61.9
GSVIVG01027157001 Vitis vinifera HOM05D006438 ORTHO05D007998 6.5e-216 754.6 673 62.9
FAN10G0107 Fragaria x ananassa HOM05D006438 ORTHO05D007998 1.1e-215 753.8 671 61.7
RcHm_v2.0_Chr1g0359811 Rosa chinensis HOM05D006438 ORTHO05D007998 5.5e-215 751.5 684 60.8
Cfa003796 Carpinus fangiana HOM05D006438 ORTHO05D007998 1.6e-214 750.0 673 63.3
FAN03G1123 Fragaria x ananassa HOM05D006438 ORTHO05D007998 6.1e-214 748.0 671 61.5
FAN10G3447 Fragaria x ananassa HOM05D006438 ORTHO05D007998 7.9e-214 747.7 669 61.6
Gohir.A08G125100 Gossypium hirsutum HOM05D006438 ORTHO05D007998 6.7e-213 744.6 690 61.3
MD07G1150500 Malus domestica HOM05D006438 ORTHO05D007998 1.5e-212 743.4 668 61.1
Potri.002G171600 Populus trichocarpa HOM05D006438 ORTHO05D007998 1.5e-212 743.4 673 61.8
Sabra14G0072800 Salix brachista HOM05D006438 ORTHO05D007998 3.3e-212 742.3 674 62.0
AUR62023453 Chenopodium quinoa HOM05D006438 ORTHO05D007998 9.7e-212 740.7 672 60.7
Haze_15664 Corylus avellana HOM05D006438 ORTHO05D007998 4.8e-211 738.4 673 62.3
Nn3g18981 Nelumbo nucifera HOM05D006438 ORTHO05D007998 4.1e-210 735.3 670 61.3
Glyma.03G257800 Glycine max HOM05D006438 ORTHO05D007998 4.5e-209 731.9 669 61.0
Ciclev10019221m.g Citrus clementina HOM05D006438 ORTHO05D007998 1.3e-208 730.3 675 61.0
Lj1g0004073 Lotus japonicus HOM05D006438 ORTHO05D007998 1.7e-208 729.9 667 61.9
Manes.13G077643 Manihot esculenta HOM05D006438 ORTHO05D007998 2.9e-208 729.2 674 61.7
Phvul.006G113600 Phaseolus vulgaris HOM05D006438 ORTHO05D007998 2.9e-208 729.2 671 61.0
Glyma.19G256300 Glycine max HOM05D006438 ORTHO05D007998 6.5e-208 728.0 667 61.3
Ah.05g179490 Amaranthus hybridus HOM05D006438 ORTHO05D007998 2.5e-207 726.1 678 59.6
Gohir.D08G146100 Gossypium hirsutum HOM05D006438 ORTHO05D007998 7.2e-207 724.5 681 60.8
Eucgr.A01924 Eucalyptus grandis HOM05D006438 ORTHO05D007998 9.4e-207 724.2 674 60.1
CANSAT56G2224 Cannabis sativa HOM05D006438 ORTHO05D007998 1.2e-206 723.8 676 59.5
PSO170G3726 Papaver somniferum HOM05D006438 ORTHO05D007998 2.1e-206 723.0 671 58.3
Gorai.004G151600 Gossypium raimondii HOM05D006438 ORTHO05D007998 1.8e-205 719.9 681 60.6
MD01G1082100 Malus domestica HOM05D006438 ORTHO05D007998 3.0e-205 719.2 674 59.1
VMungo0540G1767 Vigna mungo HOM05D006438 ORTHO05D007998 8.8e-205 717.6 660 60.2
FAN01G1234 Fragaria x ananassa HOM05D006438 ORTHO05D007998 4.4e-204 715.3 671 59.6
PSO063G1116 Papaver somniferum HOM05D006438 ORTHO05D007998 2.8e-203 712.6 673 58.1
Lalb_Chr18g0044491 Lupinus albus HOM05D006438 ORTHO05D007998 1.1e-202 710.7 693 60.0
Ca_09510_v3 Cicer arietinum L. HOM05D006438 ORTHO05D007998 1.2e-201 707.2 684 59.4
Ca_30059_v3 Cicer arietinum L. HOM05D006438 ORTHO05D007998 1.2e-201 707.2 684 59.4
Nn1g00253 Nelumbo nucifera HOM05D006438 ORTHO05D007998 2.6e-201 706.1 661 60.8
ECA236G2598 Erigeron canadensis HOM05D006438 ORTHO05D007998 1.1e-199 700.7 663 59.4
Cpa.g.sc96.25 Carica papaya HOM05D006438 ORTHO05D007998 7.2e-199 698.0 675 59.3
THA.LOC104817364 Tarenaya hassleriana HOM05D006438 ORTHO05D007998 6.1e-198 694.9 673 58.7
COL.COLO4_06280 Corchorus olitorius HOM05D006438 ORTHO05D007998 3.7e-195 685.6 628 61.9
PGR031G2090 Punica granatum HOM05D006438 ORTHO05D007998 3.7e-195 685.6 675 59.1
arahy.Tifrunner.gnm1.ann1.TZA1ET Arachis hypogaea HOM05D006438 ORTHO05D007998 5.3e-194 681.8 649 59.8
TPR.G4682 Trifolium pratense HOM05D006438 ORTHO05D007998 5.3e-194 681.8 656 59.6
arahy.Tifrunner.gnm1.ann1.QN4XTT Arachis hypogaea HOM05D006438 ORTHO05D007998 1.0e-192 677.6 655 59.5
HanXRQChr04g0120541 Helianthus annuus HOM05D006438 ORTHO05D007998 1.3e-192 677.2 671 58.0
MBI07_g40678_MAGBIO Magnolia biondii HOM05D006438 ORTHO05D007998 5.5e-191 671.8 670 55.8
Potri.014G099300 Populus trichocarpa HOM05D006438 ORTHO05D007998 1.6e-190 670.2 599 61.9
ClCG06G001260 Citrullus lanatus HOM05D006438 ORTHO05D007998 1.0e-189 667.5 673 57.2
MELO3C022408.2 Cucumis melo HOM05D006438 ORTHO05D007998 8.8e-189 664.5 675 56.9
Psat3g002440 Pisum sativum HOM05D006438 ORTHO05D007998 9.8e-188 661.0 685 56.9
Aqoxy5G04279 Aquilegia oxysepala HOM05D006438 ORTHO05D007998 3.1e-186 656.0 667 55.2
Aa31LG10G15790 Aethionema arabicum HOM05D006438 ORTHO05D007998 1.3e-184 650.6 664 55.6
Medtr7g117420 Medicago truncatula HOM05D006438 ORTHO05D007998 8.5e-184 647.9 645 57.8
ATR0602G124 Amborella trichopoda HOM05D006438 ORTHO05D007998 1.2e-180 637.5 671 54.4
AUR62004500 Chenopodium quinoa HOM05D006438 ORTHO05D007998 1.5e-180 637.1 660 54.8
CsaV3_6G007190 Cucumis sativus L. HOM05D006438 ORTHO05D007998 3.4e-180 636.0 673 55.1
Lsat_1_v5_gn_7_1020 Lactuca sativa HOM05D006438 ORTHO05D007998 3.7e-179 632.5 674 56.1
unitig_37.g12626 Utricularia gibba HOM05D006438 ORTHO05D007998 1.2e-177 627.5 634 57.4
AL5G44360 Arabidopsis lyrata HOM05D006438 ORTHO05D007998 5.9e-177 625.2 675 53.8
Thhalv10005821m.g Eutrema salsugineum HOM05D006438 ORTHO05D007998 1.7e-176 623.6 678 52.8
Sed0005284 Sechium edule HOM05D006438 ORTHO05D007998 1.9e-175 620.2 655 54.7
Sp5g01570 Schrenkiella parvula HOM05D006438 ORTHO05D007998 3.3e-175 619.4 676 52.8
Actinidia10144 Actinidia chinensis HOM05D006438 ORTHO05D007998 7.3e-175 618.2 469 68.4
HPP92_008818 Vanilla planifolia HOM05D006438 ORTHO05D007998 1.0e-173 614.4 683 53.0
Carub.0005s2854 Capsella rubella HOM05D006438 ORTHO05D007998 2.9e-171 606.3 679 51.5
AT3G61800 Arabidopsis thaliana HOM05D006438 ORTHO05D007998 2.7e-169 599.7 676 51.6
CARHR172130 Cardamine hirsuta HOM05D006438 ORTHO05D007998 1.7e-168 597.0 679 51.3
BraA07t30216Z Brassica rapa HOM05D006438 ORTHO05D007998 1.1e-165 587.8 674 51.5
BolC6t37959H Brassica oleracea HOM05D006438 ORTHO05D007998 3.1e-165 586.3 674 51.0
C06p27980 Brassica napus HOM05D006438 ORTHO05D007998 8.9e-165 584.7 674 50.9
A07p25760 Brassica napus HOM05D006438 ORTHO05D007998 9.8e-164 581.3 674 50.9
SEGI_11798 Sequoiadendron giganteum HOM05D006438 ORTHO05D007998 6.6e-136 488.8 696 44.5
Mapoly0002s0048 Marchantia polymorpha HOM05D006438 ORTHO05D007998 3.3e-135 486.5 685 43.5
Cc10_g13840 Coffea canephora HOM05D006438 ORTHO05D007998 9.0e-133 478.4 372 70.2
Pp3c3_31410 Physcomitrium patens HOM05D006438 ORTHO05D007998 4.2e-130 469.5 709 40.8
Dinv35119 Davidia involucrata HOM05D006438 ORTHO05D007998 1.1e-127 461.5 674 44.8
Zm00001eb378420 Zea mays HOM05D006438 ORTHO05D007998 1.8e-125 454.1 629 45.3
BcaC08g45166 Brassica carinata HOM05D006438 ORTHO05D007998 1.3e-120 438.0 562 46.3
SMO365G0083 Selaginella moellendorffii HOM05D006438 ORTHO05D007998 1.3e-118 431.4 673 40.4
Atru.chr5.676 Acer truncatum HOM05D006438 ORTHO05D007998 2.6e-116 423.7 310 73.2
CDE08G0794 Ceratophyllum demersum HOM05D006438 ORTHO05D007998 1.4e-106 391.3 337 60.8
SHI13317 Sapria himalayana HOM05D006438 ORTHO05D007998 4.7e-97 359.8 335 58.8
BcaC08g45168 Brassica carinata HOM05D006438 ORTHO05D007998 1.1e-95 355.1 310 60.6
Atru.chr5.675 Acer truncatum HOM05D006438 ORTHO05D007998 5.9e-76 289.7 251 62.9
AagrBONN_evm.TU.Sc2ySwM_368.299 Anthoceros agrestis HOM05D006438 ORTHO05D007998 4.0e-72 276.9 610 32.6
BcaC08g45167 Brassica carinata HOM05D006438 ORTHO05D007998 2.7e-52 211.1 249 51.0
C08p42400 Brassica napus HOM05D006438 ORTHO05D007998 1.1e-42 179.1 281 42.3
BraA06t25827Z Brassica rapa HOM05D006438 ORTHO05D007998 1.9e-42 178.3 256 44.9
SEGI_17110 Sequoiadendron giganteum HOM05D006438 ORTHO05D007998 9.9e-39 166.0 221 43.4
Sabra02G0141200 Salix brachista HOM05D006438 ORTHO05D007998 2.3e-27 128.3 356 30.6
Aa31sc496G10 Aethionema arabicum HOM05D006438 ORTHO05D007998 9.0e-16 89.7 159 40.3
SEGI_37113 Sequoiadendron giganteum HOM05D006438 ORTHO05D007998 5.8e-15 87.0 178 32.0
Zm00001eb167390 Zea mays HOM05D006438 ORTHO05D007998 5.4e-13 80.5 90 48.9
MCO15G002 Micromonas commoda HOM05D006438 ORTHO05D007998 1.2e-07 62.8 206 28.6


User provided reference genes

Program Settings