Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g039030 Solanum pennellii HOM05D002932 ORTHO05D003208 1.6e-155 552.7 282 100.0
Solyc01g095240.3 Solanum lycopersicum HOM05D002932 ORTHO05D003208 2.4e-140 502.3 270 95.9
PGSC0003DMG402000198 Solanum tuberosum HOM05D002932 ORTHO05D003208 3.1e-135 485.3 296 86.8
CAN.G78.138 Capsicum annuum HOM05D002932 ORTHO05D003208 7.0e-103 377.9 304 68.8
CAN.G959.5 Capsicum annuum HOM05D000001 ORTHO05D014548 1.4e-90 337.0 278 68.7
Nitab4.5_0009475g0010 Nicotiana tabacum HOM05D002932 ORTHO05D003208 2.3e-90 336.3 297 66.0
Nitab4.5_0000305g0360 Nicotiana tabacum HOM05D002932 ORTHO05D003208 2.0e-89 333.2 299 64.5
Peaxi162Scf00020g00174 Petunia axillaris HOM05D002932 ORTHO05D003208 1.6e-86 323.6 286 65.0
CAN.G694.15 Capsicum annuum HOM05D001716 ORTHO05D003208 2.1e-83 313.2 266 68.8
CAN.G1578.6 Capsicum annuum HOM05D000129 ORTHO05D000997 5.4e-71 271.9 246 64.6
CAN.G1495.19 Capsicum annuum HOM05D000129 ORTHO05D000997 1.9e-52 210.3 192 65.6
CAN.G1578.16 Capsicum annuum HOM05D002932 ORTHO05D003208 8.1e-51 204.9 153 73.2
MSTRG.4831 Avicennia marina HOM05D002932 ORTHO05D003208 7.8e-38 161.8 273 42.5
Dinv32532 Davidia involucrata HOM05D002932 ORTHO05D003208 4.0e-34 149.4 211 45.0
Actinidia20171 Actinidia chinensis HOM05D002932 ORTHO05D003208 1.2e-33 147.9 271 41.7
Dinv43873 Davidia involucrata HOM05D002932 ORTHO05D003208 1.2e-33 147.9 289 39.4
MSTRG.17303 Avicennia marina HOM05D002932 ORTHO05D003208 3.4e-33 146.4 273 41.8
CSS0002659 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 1.9e-31 140.6 265 39.2
CSS0013096 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 7.1e-31 138.7 265 39.2
Oeu054360.1 Olea europaea HOM05D002932 ORTHO05D003208 2.1e-30 137.1 279 37.6
CAN.G1884.5 Capsicum annuum HOM05D025866 ORTHO05D020249 3.3e-28 129.8 114 64.0
Sopen10g005630 Solanum pennellii HOM05D002932 ORTHO05D003208 4.0e-26 122.9 270 37.8
PGSC0003DMG400019420 Solanum tuberosum HOM05D002932 ORTHO05D003208 9.0e-26 121.7 270 37.4
Gohir.D12G255000 Gossypium hirsutum HOM05D002932 ORTHO05D003208 3.4e-25 119.8 268 32.8
Gorai.008G272600 Gossypium raimondii HOM05D002932 ORTHO05D003208 3.4e-25 119.8 268 32.8
Gohir.A12G254433 Gossypium hirsutum HOM05D002932 ORTHO05D003208 5.8e-25 119.0 268 32.8
Cc02_g38700 Coffea canephora HOM05D002932 ORTHO05D003208 7.6e-25 118.6 275 34.2
SGA_v2.0_scaffold11G05690 Striga asiatica HOM05D002932 ORTHO05D003208 1.1e-23 114.8 268 36.2
Atru.chr5.594 Acer truncatum HOM05D002932 ORTHO05D003208 1.4e-23 114.4 264 36.4
Manes.14G020200 Manihot esculenta HOM05D002932 ORTHO05D003208 1.9e-23 114.0 264 31.4
Manes.06G154700 Manihot esculenta HOM05D002932 ORTHO05D003208 2.4e-23 113.6 266 33.1
MSTRG.20870 Avicennia marina HOM05D002932 ORTHO05D003208 4.2e-23 112.8 274 35.4
DCAR_006952 Daucus carota HOM05D002932 ORTHO05D003208 1.6e-22 110.9 263 33.5
Hma1.2p1_0783F.1_g216930 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 1.6e-22 110.9 210 34.3
Haze_15577 Corylus avellana HOM05D002932 ORTHO05D003208 3.5e-22 109.8 188 43.1
Haze_15582 Corylus avellana HOM05D002932 ORTHO05D003208 3.5e-22 109.8 188 43.1
CiPaw.06G005800 Carya illinoinensis HOM05D002932 ORTHO05D003208 7.9e-22 108.6 264 31.1
Glyma.16G173400 Glycine max HOM05D002932 ORTHO05D003208 1.0e-21 108.2 264 32.2
Manes.01G251500 Manihot esculenta HOM05D002932 ORTHO05D003208 1.0e-21 108.2 265 34.3
Thecc.03G188500 Theobroma cacao HOM05D002932 ORTHO05D003208 1.0e-21 108.2 266 31.6
QL09p012032 Quercus lobata HOM05D002932 ORTHO05D003208 1.3e-21 107.8 269 32.0
GSVIVG01028788001 Vitis vinifera HOM05D003816 ORTHO05D004410 1.3e-21 107.8 266 32.0
TAR374G1073 Trochodendron aralioides HOM05D002932 ORTHO05D003208 1.8e-21 107.5 209 35.4
Lsat_1_v5_gn_4_34860 Lactuca sativa HOM05D002932 ORTHO05D003208 2.3e-21 107.1 265 32.8
Haze_00079 Corylus avellana HOM05D002932 ORTHO05D003208 3.9e-21 106.3 263 30.4
Potri.012G035200 Populus trichocarpa HOM05D002932 ORTHO05D003208 3.9e-21 106.3 266 31.2
Potri.015G026600 Populus trichocarpa HOM05D002932 ORTHO05D003208 5.1e-21 105.9 266 31.2
Duzib205G0983 Durio zibethinus HOM05D002932 ORTHO05D003208 6.7e-21 105.5 266 32.0
Duzib068G0647 Durio zibethinus HOM05D002932 ORTHO05D003208 8.7e-21 105.1 269 30.1
Duzib084G0326 Durio zibethinus HOM05D002932 ORTHO05D003208 8.7e-21 105.1 266 30.8
VMungo0464G0277 Vigna mungo HOM05D002932 ORTHO05D003208 1.9e-20 104.0 265 31.3
Sabra12G0024300 Salix brachista HOM05D002932 ORTHO05D003208 2.5e-20 103.6 271 31.0
Cpa.g.sc3.12 Carica papaya HOM05D002932 ORTHO05D003208 3.3e-20 103.2 267 30.0
Cfa016327 Carpinus fangiana HOM05D002932 ORTHO05D003208 4.3e-20 102.8 269 30.9
Duzib138G0190 Durio zibethinus HOM05D002932 ORTHO05D003208 4.3e-20 102.8 265 32.1
Sabra15G0019600 Salix brachista HOM05D002932 ORTHO05D003208 4.3e-20 102.8 270 31.9
Dinv35290 Davidia involucrata HOM05D002932 ORTHO05D003208 5.6e-20 102.4 270 30.7
Phvul.004G102700 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 5.6e-20 102.4 259 31.3
COL.COLO4_30256 Corchorus olitorius HOM05D002932 ORTHO05D003208 7.4e-20 102.1 268 30.2
Duzib133G1077 Durio zibethinus HOM05D002932 ORTHO05D003208 7.4e-20 102.1 265 32.5
Glyma.09G126400 Glycine max HOM05D002932 ORTHO05D003208 7.4e-20 102.1 258 31.4
TAR629G3108 Trochodendron aralioides HOM05D002932 ORTHO05D003208 9.6e-20 101.7 266 32.7
Nn1g01736 Nelumbo nucifera HOM05D002932 ORTHO05D003208 1.3e-19 101.3 215 34.9
SalBow3G2518 Salvia bowleyana HOM05D002932 ORTHO05D003208 1.3e-19 101.3 189 41.3
Glyma.20G164000 Glycine max HOM05D002932 ORTHO05D003208 1.6e-19 100.9 267 31.5
Ciclev10023540m.g Citrus clementina HOM05D002932 ORTHO05D003208 2.1e-19 100.5 272 32.4
TAR636G0499 Trochodendron aralioides HOM05D002932 ORTHO05D003208 2.1e-19 100.5 263 32.7
Sabra15G0022400 Salix brachista HOM05D002932 ORTHO05D003208 3.7e-19 99.8 270 31.5
MELO3C006960.2 Cucumis melo HOM05D002932 ORTHO05D003208 6.2e-19 99.0 266 28.2
Dinv28362 Davidia involucrata HOM05D002932 ORTHO05D003208 6.2e-19 99.0 267 28.8
Gohir.D08G148800 Gossypium hirsutum HOM05D002932 ORTHO05D003208 6.2e-19 99.0 266 32.3
Gorai.004G154500 Gossypium raimondii HOM05D002932 ORTHO05D003208 6.2e-19 99.0 266 32.3
ClCG05G008540 Citrullus lanatus HOM05D002932 ORTHO05D003208 1.4e-18 97.8 266 27.8
CsaV3_3G021720 Cucumis sativus L. HOM05D002932 ORTHO05D003208 1.4e-18 97.8 266 28.2
Glyma.10G229200 Glycine max HOM05D002932 ORTHO05D003208 1.4e-18 97.8 267 30.3
VMungo0720G0620 Vigna mungo HOM05D002932 ORTHO05D003208 1.8e-18 97.4 270 31.9
Gohir.A08G127400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 2.4e-18 97.1 266 32.3
Nn7g37319 Nelumbo nucifera HOM05D002932 ORTHO05D003208 2.4e-18 97.1 168 38.1
RcHm_v2.0_Chr1g0379591 Rosa chinensis HOM05D002932 ORTHO05D003208 3.1e-18 96.7 272 32.0
Phvul.007G077100 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 4.0e-18 96.3 267 31.5
Prupe.2G304400 Prunus persica HOM05D002932 ORTHO05D003208 4.0e-18 96.3 270 30.4
Potri.014G091500 Populus trichocarpa HOM05D002932 ORTHO05D003208 5.3e-18 95.9 261 32.6
Actinidia08604 Actinidia chinensis HOM05D002932 ORTHO05D003208 6.9e-18 95.5 268 30.2
Atru.chr1.321 Acer truncatum HOM05D002932 ORTHO05D003208 1.2e-17 94.7 179 37.4
Lj2g0001659 Lotus japonicus HOM05D002932 ORTHO05D003208 1.2e-17 94.7 268 28.0
Sed0015119 Sechium edule HOM05D002932 ORTHO05D003208 1.2e-17 94.7 270 27.8
Actinidia03151 Actinidia chinensis HOM05D002932 ORTHO05D003208 2.6e-17 93.6 270 30.4
unitig_62.g23806 Utricularia gibba HOM05D001977 ORTHO05D002246 2.6e-17 93.6 269 30.9
arahy.Tifrunner.gnm1.ann1.N7QM32 Arachis hypogaea HOM05D002932 ORTHO05D003208 4.5e-17 92.8 269 27.1
FAN03G0587 Fragaria x ananassa HOM05D002932 ORTHO05D003208 4.5e-17 92.8 273 31.9
Sabra14G0066400 Salix brachista HOM05D002932 ORTHO05D003208 4.5e-17 92.8 199 37.2
Sed0008251 Sechium edule HOM05D002932 ORTHO05D003208 4.5e-17 92.8 271 28.4
TWI23G0695 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 4.5e-17 92.8 263 28.5
Migut.B01809 Erythranthe guttata HOM05D002932 ORTHO05D003208 5.8e-17 92.4 212 36.3
Psat0s694g0080 Pisum sativum HOM05D002932 ORTHO05D003208 5.8e-17 92.4 267 31.5
Lalb_Chr03g0035141 Lupinus albus HOM05D002932 ORTHO05D003208 7.6e-17 92.0 269 29.7
arahy.Tifrunner.gnm1.ann1.M5AIDB Arachis hypogaea HOM05D002932 ORTHO05D003208 1.0e-16 91.7 268 27.2
Medtr6g034060 Medicago truncatula HOM05D002932 ORTHO05D003208 1.7e-16 90.9 273 28.2
Phvul.003G048900 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 2.2e-16 90.5 259 30.1
CiPaw.02G036300 Carya illinoinensis HOM05D002932 ORTHO05D003208 2.9e-16 90.1 275 32.7
FvH4_7g30650 Fragaria vesca HOM05D002932 ORTHO05D003208 2.9e-16 90.1 270 30.4
FAN06G0995 Fragaria x ananassa HOM05D002932 ORTHO05D003208 2.9e-16 90.1 270 30.4
MBI07_g44813_MAGBIO Magnolia biondii HOM05D002932 ORTHO05D003208 3.8e-16 89.7 260 30.8
Glyma.18G121000 Glycine max HOM05D002932 ORTHO05D003208 4.9e-16 89.4 260 30.8
MD07G1282200 Malus domestica HOM05D002932 ORTHO05D003208 4.9e-16 89.4 280 28.9
TPR.G36623 Trifolium pratense HOM05D002932 ORTHO05D003208 4.9e-16 89.4 268 29.5
Lj5g0016966 Lotus japonicus HOM05D002932 ORTHO05D003208 6.5e-16 89.0 265 27.5
Lalb_Chr01g0009541 Lupinus albus HOM05D002932 ORTHO05D003208 6.5e-16 89.0 263 28.5
PGR042G1004 Punica granatum HOM05D002932 ORTHO05D003208 8.4e-16 88.6 268 29.9
FAN10G0880 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.1e-15 88.2 270 30.0
FAN10G1573 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.1e-15 88.2 270 30.0
CANSAT21G2430 Cannabis sativa HOM05D002932 ORTHO05D003208 1.9e-15 87.4 280 32.5
Medtr1g099440 Medicago truncatula HOM05D002932 ORTHO05D003208 2.5e-15 87.0 264 28.8
CSS0021611 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 4.2e-15 86.3 266 30.5
FAN01G1179 Fragaria x ananassa HOM05D002932 ORTHO05D003208 5.5e-15 85.9 180 35.0
FAN06G4297 Fragaria x ananassa HOM05D002932 ORTHO05D003208 5.5e-15 85.9 180 35.0
Psat1g106560 Pisum sativum HOM05D002932 ORTHO05D003208 5.5e-15 85.9 262 27.9
Glyma.08G299600 Glycine max HOM05D002932 ORTHO05D003208 9.3e-15 85.1 259 30.1
Lj2g0019721 Lotus japonicus HOM05D002932 ORTHO05D003208 9.3e-15 85.1 266 30.1
VMungo0251G1401 Vigna mungo HOM05D002932 ORTHO05D003208 9.3e-15 85.1 262 29.4
Hma1.2p1_0142F.1_g064300 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 1.2e-14 84.7 271 29.9
PGR031G1724 Punica granatum HOM05D002932 ORTHO05D003208 1.2e-14 84.7 268 31.3
TPR.G7742 Trifolium pratense HOM05D002932 ORTHO05D003208 1.2e-14 84.7 265 29.4
TWI14G1190 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 1.6e-14 84.3 224 30.4
MD01G1211600 Malus domestica HOM05D002932 ORTHO05D003208 2.1e-14 84.0 276 27.5
Oeu063673.2 Olea europaea HOM05D002932 ORTHO05D003208 2.1e-14 84.0 265 30.9
Gohir.A11G013400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 2.7e-14 83.6 170 34.1
vmacro06597 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 2.7e-14 83.6 273 30.0
Glyma.02G106200 Glycine max HOM05D002932 ORTHO05D003208 4.6e-14 82.8 267 30.7
Gohir.D11G013600 Gossypium hirsutum HOM05D002932 ORTHO05D003208 6.0e-14 82.4 183 32.2
Medtr6g034055 Medicago truncatula HOM05D002932 ORTHO05D003208 6.0e-14 82.4 275 28.4
TPR.G37115 Trifolium pratense HOM05D002932 ORTHO05D003208 7.9e-14 82.0 186 35.5
Psat1g099320 Pisum sativum HOM05D002932 ORTHO05D003208 2.3e-13 80.5 263 28.5
Glyma.01G045900 Glycine max HOM05D002932 ORTHO05D003208 3.9e-13 79.7 268 28.0
Rhsim03G0196300 Rhododendron simsii HOM05D002932 ORTHO05D003208 3.9e-13 79.7 271 30.6
Lalb_Chr04g0256131 Lupinus albus HOM05D002932 ORTHO05D003208 6.7e-13 79.0 261 28.7
Ciclev10005884m.g Citrus clementina HOM05D002932 ORTHO05D003208 8.7e-13 78.6 211 28.9
Rhsim09G0202600 Rhododendron simsii HOM05D002932 ORTHO05D003208 8.7e-13 78.6 171 33.9
CAN.G1578.19 Capsicum annuum HOM05D000129 ORTHO05D000997 1.1e-12 78.2 81 58.0
HanXRQChr16g0523761 Helianthus annuus HOM05D002932 ORTHO05D003208 1.5e-12 77.8 265 30.6
HanXRQChr13g0392281 Helianthus annuus HOM05D002932 ORTHO05D003208 1.9e-12 77.4 175 34.9
Psat1g099240 Pisum sativum HOM05D002932 ORTHO05D003208 1.9e-12 77.4 263 28.9
TPR.G36701 Trifolium pratense HOM05D002932 ORTHO05D003208 1.9e-12 77.4 266 25.2
CSS0045579 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 7.4e-12 75.5 184 32.6
Eucgr.A02685 Eucalyptus grandis HOM05D002932 ORTHO05D003208 2.1e-11 73.9 272 27.9
Lalb_Chr02g0141341 Lupinus albus HOM05D002932 ORTHO05D003208 3.7e-11 73.2 268 27.6
Manes.05G028200 Manihot esculenta HOM05D002932 ORTHO05D003208 4.8e-11 72.8 209 33.5
Ah.13g069610 Amaranthus hybridus HOM05D002932 ORTHO05D003208 6.3e-11 72.4 270 26.7
Oeu009283.1 Olea europaea HOM05D002932 ORTHO05D003208 6.3e-11 72.4 271 28.8
Medtr5g039840 Medicago truncatula HOM05D002932 ORTHO05D003208 8.2e-11 72.0 258 27.9
Eucgr.K00306 Eucalyptus grandis HOM05D002932 ORTHO05D003208 1.1e-10 71.6 274 27.4
Solyc03g007775.2 Solanum lycopersicum HOM05D002932 ORTHO05D003208 1.4e-10 71.2 221 32.1
Oeu037130.1 Olea europaea HOM05D002932 ORTHO05D003208 1.8e-10 70.9 275 28.0
Psat1g099360 Pisum sativum HOM05D002932 ORTHO05D003208 1.8e-10 70.9 263 27.8
COL.COLO4_06371 Corchorus olitorius HOM05D002932 ORTHO05D003208 2.4e-10 70.5 240 30.0
Medtr7g039720 Medicago truncatula HOM05D002932 ORTHO05D003208 6.9e-10 68.9 258 29.5
Sed0004021 Sechium edule HOM05D002932 ORTHO05D003208 6.9e-10 68.9 263 30.8
Lalb_Chr21g0305311 Lupinus albus HOM05D002932 ORTHO05D003208 1.2e-09 68.2 265 25.7
SalBow4G2867 Salvia bowleyana HOM05D002932 ORTHO05D003208 1.5e-09 67.8 267 29.2
vmacro10092 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 2.0e-09 67.4 122 39.3
Sopen03g003700 Solanum pennellii HOM05D002932 ORTHO05D003208 2.6e-09 67.0 223 31.8
ECA238G1001 Erigeron canadensis HOM05D002932 ORTHO05D003208 3.4e-09 66.6 274 26.6
SGA_v2.0_scaffold4G02273 Striga asiatica HOM05D002932 ORTHO05D003208 5.9e-09 65.9 273 30.4
Ah.07g206300 Amaranthus hybridus HOM05D002932 ORTHO05D003208 1.3e-08 64.7 269 27.5
CAN.G926.8 Capsicum annuum HOM05D002932 ORTHO05D003208 1.3e-08 64.7 218 28.4
AUR62021078 Chenopodium quinoa HOM05D002932 ORTHO05D003208 5.0e-08 62.8 125 37.6
Lsat_1_v5_gn_8_6240 Lactuca sativa HOM05D002932 ORTHO05D003208 5.0e-08 62.8 264 25.8
Migut.F00261 Erythranthe guttata HOM05D002932 ORTHO05D003208 6.5e-08 62.4 163 33.1
PGSC0003DMG400019964 Solanum tuberosum HOM05D002932 ORTHO05D003208 6.5e-08 62.4 163 31.9
Thecc.01G350800 Theobroma cacao HOM05D002932 ORTHO05D003208 8.4e-08 62.0 190 31.1
AUR62031454 Chenopodium quinoa HOM05D002932 ORTHO05D003208 1.9e-07 60.8 94 39.4
Aqoxy1G02826 Aquilegia oxysepala HOM05D002932 ORTHO05D003208 2.5e-07 60.5 276 28.3
TWI59G0718 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 2.5e-07 60.5 178 30.3
CSS0001843 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 3.2e-07 60.1 141 34.0
EL10Ac3g05377 Beta vulgaris HOM05D002932 ORTHO05D003208 5.5e-07 59.3 94 40.4
Sed0018025 Sechium edule HOM05D002932 ORTHO05D003208 5.5e-07 59.3 173 27.7
MELO3C005851.2 Cucumis melo HOM05D002932 ORTHO05D003208 7.2e-07 58.9 278 24.8
Sp6g15070 Schrenkiella parvula HOM05D002932 ORTHO05D003208 2.7e-06 57.0 271 25.5
Eucgr.E00092 Eucalyptus grandis HOM05D002932 ORTHO05D003208 3.5e-06 56.6 86 41.9
AL8G27370 Arabidopsis lyrata HOM05D002932 ORTHO05D003208 4.6e-06 56.2 176 29.0
HanXRQChr14g0462641 Helianthus annuus HOM05D002932 ORTHO05D003208 4.6e-06 56.2 270 24.4
PGR142G0585 Punica granatum HOM05D002932 ORTHO05D003208 4.6e-06 56.2 274 24.8
AT5G52900 Arabidopsis thaliana HOM05D002932 ORTHO05D003208 6.1e-06 55.8 282 25.2
Lsat_1_v5_gn_3_138021 Lactuca sativa HOM05D002932 ORTHO05D003208 6.1e-06 55.8 167 28.1
C03p18060 Brassica napus HOM05D002932 ORTHO05D003208 7.9e-06 55.5 275 26.2
BolC3t14211H Brassica oleracea HOM05D002932 ORTHO05D003208 7.9e-06 55.5 275 26.2
MELO3C006073.2 Cucumis melo HOM05D002932 ORTHO05D003208 7.9e-06 55.5 259 27.4


User provided reference genes

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