Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 0.0e+00 1385.5 757 100.0
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 0.0e+00 1360.9 758 98.5
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 0.0e+00 1112.1 760 82.4
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 1.6e-300 1035.8 773 77.2
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 3.9e-294 1014.6 763 76.3
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 2.6e-285 985.3 763 74.7
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 3.8e-212 742.3 800 58.5
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 8.4e-212 741.1 775 59.5
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 5.4e-211 738.4 775 59.1
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 1.1e-200 704.1 819 55.8
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 4.3e-200 702.2 803 55.2
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 7.4e-200 701.4 767 57.2
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 7.4e-200 701.4 801 56.8
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 3.8e-196 689.1 788 57.4
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 4.2e-195 685.6 781 56.1
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 5.5e-195 685.3 799 55.3
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 9.3e-195 684.5 797 56.5
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 2.1e-194 683.3 789 55.8
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 2.7e-194 682.9 801 54.6
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 3.3e-192 676.0 781 57.5
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 4.3e-192 675.6 372 95.7
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 6.3e-191 671.8 813 54.4
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 1.4e-190 670.6 783 55.4
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 1.3e-188 664.1 780 54.4
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 2.5e-187 659.8 793 54.9
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 1.9e-184 650.2 799 53.8
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 2.2e-183 646.7 770 54.3
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 5.9e-181 638.6 812 53.1
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 1.3e-180 637.5 839 51.3
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 3.8e-180 636.0 828 52.3
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 1.4e-179 634.0 784 52.7
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 9.4e-179 631.3 793 53.3
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 9.4e-179 631.3 786 54.2
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.6e-178 629.4 805 52.3
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 3.0e-177 626.3 946 46.9
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 3.0e-177 626.3 764 54.8
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 3.3e-176 622.9 808 50.9
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 8.2e-175 618.2 724 54.6
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 2.6e-173 613.2 788 52.4
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 3.4e-173 612.8 790 51.6
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 1.0e-172 611.3 787 52.2
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 8.5e-172 608.2 788 53.2
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 1.4e-171 607.4 784 51.3
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 3.2e-171 606.3 786 50.8
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 4.2e-171 605.9 779 52.2
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 4.2e-171 605.9 787 52.2
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 4.2e-171 605.9 781 51.7
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 7.2e-171 605.1 783 51.3
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 1.6e-170 604.0 778 51.4
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 3.6e-170 602.8 808 50.2
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 6.1e-170 602.1 790 51.8
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 1.0e-169 601.3 787 51.5
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 1.0e-169 601.3 785 51.3
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.4e-169 600.9 788 52.8
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 1.8e-169 600.5 697 54.4
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.0e-169 599.7 786 52.4
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 5.2e-169 599.0 786 52.3
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.5e-168 597.4 766 52.6
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 4.4e-168 595.9 788 51.0
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 1.7e-167 594.0 783 51.6
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 1.1e-166 591.3 788 51.8
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 1.4e-166 590.9 783 50.6
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 1.0e-164 584.7 772 51.0
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 1.3e-164 584.3 795 50.8
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 2.9e-164 583.2 792 49.0
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.8e-164 582.8 812 51.1
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 5.0e-164 582.4 793 50.1
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 2.7e-162 576.6 766 50.9
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 6.1e-162 575.5 775 50.2
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 1.4e-161 574.3 806 48.4
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 2.0e-160 570.5 789 49.9
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 1.1e-158 564.7 831 48.1
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 9.1e-158 561.6 691 53.0
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.9e-156 556.6 778 49.2
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 1.5e-155 554.3 782 49.0
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 7.2e-155 552.0 806 48.8
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 2.7e-154 550.1 768 49.0
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 4.7e-154 549.3 821 49.0
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 8.0e-154 548.5 801 48.7
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 1.3e-151 541.2 778 48.8
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 1.2e-149 534.6 777 47.2
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 2.7e-149 533.5 779 48.9
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 1.3e-148 531.2 701 49.9
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 1.9e-147 527.3 778 47.7
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 2.5e-147 526.9 780 47.9
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 2.1e-146 523.9 686 51.0
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 2.1e-146 523.9 686 51.2
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 2.8e-146 523.5 866 44.9
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 3.6e-146 523.1 686 51.0
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 6.1e-146 522.3 797 46.5
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 6.1e-146 522.3 780 47.7
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 8.0e-146 521.9 786 48.2
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 8.0e-146 521.9 686 50.9
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 1.4e-145 521.2 686 50.9
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 1.2e-144 518.1 785 47.3
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 1.5e-144 517.7 834 45.4
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 6.3e-143 512.3 805 46.3
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 1.8e-142 510.8 781 44.9
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 2.7e-141 506.9 785 47.0
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 4.5e-141 506.1 527 57.3
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 2.5e-139 500.4 735 49.3
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.4e-137 494.6 774 44.7
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 5.2e-137 492.7 609 53.7
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 6.8e-137 492.3 780 45.3
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 1.2e-136 491.5 694 49.9
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 1.5e-136 491.1 620 52.4
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 5.8e-136 489.2 778 45.0
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 7.5e-136 488.8 692 48.8
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 1.7e-135 487.6 609 53.2
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.9e-134 484.2 783 44.3
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 3.2e-134 483.4 698 48.1
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 3.5e-133 479.9 780 44.2
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 6.0e-133 479.2 804 44.4
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 8.6e-132 475.3 653 48.4
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 8.6e-132 475.3 773 45.0
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 1.2e-130 471.5 802 43.9
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 6.2e-130 469.2 700 46.6
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 8.0e-130 468.8 776 44.1
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 3.1e-129 466.8 698 47.4
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 5.2e-129 466.1 791 44.8
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.5e-128 464.5 608 51.0
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 5.8e-128 462.6 781 42.9
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 4.9e-127 459.5 768 43.9
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 8.3e-127 458.8 698 47.6
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 2.4e-126 457.2 731 45.6
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 3.5e-125 453.4 731 44.9
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 7.8e-125 452.2 520 55.0
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 1.1e-123 448.4 777 42.5
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 1.1e-121 441.8 782 43.2
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 4.0e-121 439.9 776 43.2
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 3.4e-120 436.8 686 45.6
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 1.6e-114 417.9 784 41.5
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 2.3e-100 370.9 689 41.5
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 6.2e-98 362.8 602 43.0
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 1.9e-94 351.3 391 55.5
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 3.2e-94 350.5 505 46.9
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 2.1e-90 337.8 356 56.5
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 4.5e-88 330.1 780 35.6
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 6.0e-77 293.1 360 52.8
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 2.5e-67 261.2 388 45.6
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 1.8e-60 238.4 260 55.4
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 1.1e-57 229.2 357 45.4
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 1.5e-56 225.3 330 47.0
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 7.4e-51 206.5 379 42.5
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 3.1e-49 201.1 687 32.6
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.3e-47 195.7 404 40.3
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 3.2e-46 191.0 321 39.3
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 1.0e-39 169.5 195 56.4
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 7.2e-38 163.3 145 65.5
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 5.7e-35 153.7 145 58.6
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 2.1e-29 135.2 183 49.2
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 4.7e-29 134.0 175 51.4
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 2.9e-23 114.8 109 64.2
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 5.6e-22 110.5 257 35.8
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 7.3e-22 110.2 163 45.4
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 3.6e-21 107.8 118 49.2
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 4.7e-21 107.5 302 32.5
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 4.0e-20 104.4 410 29.3
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.2e-17 94.7 88 63.6
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 6.0e-16 90.5 126 43.7
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 1.2e-13 82.8 309 29.8
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.6e-13 81.3 51 80.4
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 1.4e-12 79.3 126 40.5
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 4.0e-12 77.8 515 28.0
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 2.6e-11 75.1 201 35.3
BcaC07g40658 Brassica carinata HOM05D003721 ORTHO05D004303 7.1e-09 67.0 305 31.1
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.0e-07 63.2 490 26.1
Actinidia10077 Actinidia chinensis HOM05D003721 ORTHO05D004303 5.1e-07 60.8 151 39.1
Rhsim05G0209700 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.9e-06 58.9 77 49.4
Rhsim11G0030600 Rhododendron simsii HOM05D003721 ORTHO05D004303 3.3e-06 58.2 77 49.4


User provided reference genes

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