Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g038910 Solanum pennellii HOM05D006382 ORTHO05D008938 0.0e+00 1198.0 581 100.0
Solyc01g095120.3 Solanum lycopersicum HOM05D006382 ORTHO05D008938 1.1e-304 1049.3 515 99.2
PGSC0003DMG400000065 Solanum tuberosum HOM05D006382 ORTHO05D008938 5.3e-299 1030.4 515 97.5
Nitab4.5_0000915g0130 Nicotiana tabacum HOM05D006382 ORTHO05D008938 8.8e-270 933.3 518 88.8
Nitab4.5_0010695g0050 Nicotiana tabacum HOM05D006382 ORTHO05D008938 2.0e-261 905.6 534 84.6
Peaxi162Scf00020g01516 Petunia axillaris HOM05D006382 ORTHO05D008938 9.5e-256 886.7 520 84.4
Dinv43864 Davidia involucrata HOM05D006382 ORTHO05D008938 2.7e-226 788.9 516 75.2
Thecc.01G352300 Theobroma cacao HOM05D006382 ORTHO05D008938 1.7e-225 786.2 519 73.8
TWI59G0052 Tripterygium wilfordii HOM05D006382 ORTHO05D008938 3.9e-225 785.0 479 77.5
MSTRG.17299 Avicennia marina HOM05D006382 ORTHO05D008938 5.6e-224 781.2 521 73.9
Duzib133G1372 Durio zibethinus HOM05D006382 ORTHO05D008938 6.2e-223 777.7 520 72.1
GSVIVG01026968001 Vitis vinifera HOM05D006382 ORTHO05D008938 6.2e-223 777.7 516 73.6
Gohir.A11G092400 Gossypium hirsutum HOM05D006382 ORTHO05D008938 5.3e-222 774.6 520 72.1
Oeu063675.1 Olea europaea HOM05D006382 ORTHO05D008938 2.0e-221 772.7 519 73.2
Actinidia20164 Actinidia chinensis HOM05D006382 ORTHO05D008938 4.5e-221 771.5 515 73.8
Potri.002G164700 Populus trichocarpa HOM05D006382 ORTHO05D008938 9.9e-221 770.4 456 78.3
Sed0009049 Sechium edule HOM05D006382 ORTHO05D008938 1.7e-220 769.6 508 72.0
CSS0031254 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 2.2e-220 769.2 521 71.8
Gorai.007G103500 Gossypium raimondii HOM05D006382 ORTHO05D008938 2.2e-220 769.2 512 72.7
Eucgr.D02325 Eucalyptus grandis HOM05D006382 ORTHO05D008938 2.4e-219 765.8 508 72.6
MELO3C006077.2 Cucumis melo HOM05D006382 ORTHO05D008938 9.3e-219 763.8 450 78.4
Prupe.2G177700 Prunus persica HOM05D006382 ORTHO05D008938 2.7e-218 762.3 518 70.8
Hma1.2p1_0335F.1_g128860 Hydrangea macrophylla HOM05D006382 ORTHO05D008938 4.6e-218 761.5 463 78.6
SGA_v2.0_scaffold4G02278 Striga asiatica HOM05D006382 ORTHO05D008938 3.0e-217 758.8 524 71.8
Cpa.g.sc11.72 Carica papaya HOM05D006382 ORTHO05D008938 3.9e-217 758.4 511 73.4
ClCG05G001220 Citrullus lanatus HOM05D006382 ORTHO05D008938 5.1e-217 758.1 511 72.4
MD01G1071500 Malus domestica HOM05D006382 ORTHO05D008938 5.1e-217 758.1 525 70.7
Lj1g0001840 Lotus japonicus HOM05D006382 ORTHO05D008938 6.7e-217 757.7 470 76.0
Carub.0005s2823 Capsella rubella HOM05D006382 ORTHO05D008938 1.5e-216 756.5 476 74.6
CsaV3_3G008570 Cucumis sativus L. HOM05D006382 ORTHO05D008938 3.3e-216 755.4 493 72.2
CSS0000318 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 4.3e-216 755.0 514 72.0
Lalb_Chr19g0126881 Lupinus albus HOM05D006382 ORTHO05D008938 4.3e-216 755.0 521 71.2
Atru.chr5.564 Acer truncatum HOM05D006382 ORTHO05D008938 7.4e-216 754.2 467 76.2
RcHm_v2.0_Chr1g0357731 Rosa chinensis HOM05D006382 ORTHO05D008938 9.6e-216 753.8 475 74.1
SalBow3G4256 Salvia bowleyana HOM05D006382 ORTHO05D008938 9.6e-216 753.8 534 69.9
Sp5g01870 Schrenkiella parvula HOM05D006382 ORTHO05D008938 1.3e-215 753.4 526 70.2
Thhalv10005890m.g Eutrema salsugineum HOM05D006382 ORTHO05D008938 2.8e-215 752.3 505 71.9
THA.LOC104827604 Tarenaya hassleriana HOM05D006382 ORTHO05D008938 2.8e-215 752.3 468 75.9
vmacro13226 Vaccinium macrocarpon HOM05D006382 ORTHO05D008938 8.1e-215 750.7 540 69.3
Cfa003871 Carpinus fangiana HOM05D006382 ORTHO05D008938 1.1e-214 750.4 499 72.7
Rhsim07G0010300 Rhododendron simsii HOM05D006382 ORTHO05D008938 3.1e-214 748.8 510 71.6
Sabra02G0146800 Salix brachista HOM05D006382 ORTHO05D008938 1.2e-213 746.9 483 73.3
Glyma.18G238400 Glycine max HOM05D006382 ORTHO05D008938 1.5e-213 746.5 499 71.7
CARHR171860 Cardamine hirsuta HOM05D006382 ORTHO05D008938 2.0e-213 746.1 524 69.1
CiPaw.01G067600 Carya illinoinensis HOM05D006382 ORTHO05D008938 3.4e-213 745.3 474 74.1
BcaC08g45134 Brassica carinata HOM05D006382 ORTHO05D008938 4.5e-213 745.0 517 71.2
FAN01G1899 Fragaria x ananassa HOM05D006382 ORTHO05D008938 4.5e-213 745.0 527 68.5
Aqoxy7G00230 Aquilegia oxysepala HOM05D006382 ORTHO05D008938 7.6e-213 744.2 454 77.1
C06p27550 Brassica napus HOM05D006382 ORTHO05D008938 7.6e-213 744.2 517 71.4
FvH4_7g15410 Fragaria vesca HOM05D006382 ORTHO05D008938 9.9e-213 743.8 510 70.4
Phvul.008G058200 Phaseolus vulgaris HOM05D006382 ORTHO05D008938 1.7e-212 743.0 520 69.4
QL04p055600 Quercus lobata HOM05D006382 ORTHO05D008938 2.2e-212 742.7 519 70.1
AT3G61540 Arabidopsis thaliana HOM05D006382 ORTHO05D008938 2.9e-212 742.3 472 75.0
BcaB02g07372 Brassica carinata HOM05D006382 ORTHO05D008938 2.9e-212 742.3 474 74.7
BolC6t37923H Brassica oleracea HOM05D006382 ORTHO05D008938 2.9e-212 742.3 517 71.2
Lj9C589T7 Lonicera japonica HOM05D006382 ORTHO05D008938 3.8e-212 741.9 499 71.5
AL5G43900 Arabidopsis lyrata HOM05D006382 ORTHO05D008938 4.9e-212 741.5 468 73.7
Glyma.09G254600 Glycine max HOM05D006382 ORTHO05D008938 6.4e-212 741.1 524 68.5
A07p25560 Brassica napus HOM05D006382 ORTHO05D008938 1.1e-211 740.3 517 70.8
BraA07t30197Z Brassica rapa HOM05D006382 ORTHO05D008938 1.9e-211 739.6 517 70.4
Medtr7g079030 Medicago truncatula HOM05D006382 ORTHO05D008938 9.3e-211 737.3 512 70.1
VMungo1383G3370 Vigna mungo HOM05D006382 ORTHO05D008938 1.2e-210 736.9 521 68.7
Ciclev10019743m.g Citrus clementina HOM05D006382 ORTHO05D008938 1.8e-209 733.0 515 70.7
PSO266G0056 Papaver somniferum HOM05D006382 ORTHO05D008938 1.8e-209 733.0 468 75.6
arahy.Tifrunner.gnm1.ann1.Z348XU Arachis hypogaea HOM05D006382 ORTHO05D008938 3.0e-209 732.3 475 73.3
arahy.Tifrunner.gnm1.ann1.FF5BCH Arachis hypogaea HOM05D006382 ORTHO05D008938 3.9e-209 731.9 520 68.8
Atru.BG.55.p Acer truncatum HOM05D006382 ORTHO05D008938 5.1e-209 731.5 452 76.5
HanXRQChr17g0562131 Helianthus annuus HOM05D006382 ORTHO05D008938 1.1e-208 730.3 456 73.7
Nn1g01689 Nelumbo nucifera HOM05D006382 ORTHO05D008938 7.4e-208 727.6 470 73.4
CANSAT56G1207 Cannabis sativa HOM05D006382 ORTHO05D008938 1.3e-207 726.9 513 68.8
PSO384G0256 Papaver somniferum HOM05D006382 ORTHO05D008938 2.1e-207 726.1 466 74.7
FAN06G2792 Fragaria x ananassa HOM05D006382 ORTHO05D008938 3.7e-207 725.3 539 66.2
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 8.2e-207 724.2 494 72.5
Cc02_g38570 Coffea canephora HOM05D006382 ORTHO05D008938 5.3e-206 721.5 526 68.4
Psat3g105480 Pisum sativum HOM05D006382 ORTHO05D008938 5.3e-206 721.5 482 71.6
FAN03G1976 Fragaria x ananassa HOM05D006382 ORTHO05D008938 9.0e-206 720.7 507 68.2
EL10Ac1g00353 Beta vulgaris HOM05D006382 ORTHO05D008938 1.5e-205 719.9 494 69.4
ECA234G1133 Erigeron canadensis HOM05D006382 ORTHO05D008938 1.3e-204 716.8 454 72.0
TPR.G35789 Trifolium pratense HOM05D006382 ORTHO05D008938 1.3e-204 716.8 503 69.6
DCAR_005361 Daucus carota HOM05D006382 ORTHO05D008938 2.2e-204 716.1 513 67.3
Sc01g0003200 Simmondsia chinensis HOM05D006382 ORTHO05D008938 7.1e-203 711.1 490 69.0
CAN.G78.131 Capsicum annuum HOM05D006382 ORTHO05D008938 2.1e-202 709.5 365 93.2
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 1.8e-201 706.4 443 74.5
Haze_15566 Corylus avellana HOM05D006382 ORTHO05D008938 6.7e-201 704.5 497 69.4
FAN06G0271 Fragaria x ananassa HOM05D006382 ORTHO05D008938 2.8e-199 699.1 460 71.3
AUR62004414 Chenopodium quinoa HOM05D006382 ORTHO05D008938 3.7e-199 698.7 500 66.2
ATR0721G029 Amborella trichopoda HOM05D006382 ORTHO05D008938 4.8e-199 698.4 452 73.5
MBI06_g33533_MAGBIO Magnolia biondii HOM05D006382 ORTHO05D008938 3.1e-198 695.7 452 72.8
HPP92_008800 Vanilla planifolia HOM05D006382 ORTHO05D008938 5.3e-198 694.9 461 69.2
CDE10G0280 Ceratophyllum demersum HOM05D006382 ORTHO05D008938 6.7e-193 677.9 501 64.9
Lsat_1_v5_gn_4_35160 Lactuca sativa HOM05D006382 ORTHO05D008938 5.3e-190 668.3 478 66.1
Aa31LG10G15440 Aethionema arabicum HOM05D006382 ORTHO05D008938 5.5e-187 658.3 436 71.1
CANSAT56G3955 Cannabis sativa HOM05D006382 ORTHO05D008938 6.7e-185 651.4 464 67.5
unitig_747.g21323 Utricularia gibba HOM05D000887 ORTHO05D000908 1.7e-180 636.7 525 63.2
COL.COLO4_12779 Corchorus olitorius HOM05D006382 ORTHO05D008938 3.6e-178 629.0 457 68.7
Mapoly0179s0013 Marchantia polymorpha HOM05D006382 ORTHO05D008938 3.3e-176 622.5 477 61.4
Pp3c20_22770 Physcomitrium patens HOM05D006382 ORTHO05D008938 3.3e-176 622.5 481 61.5
Migut.B01800 Erythranthe guttata HOM05D006382 ORTHO05D008938 4.4e-176 622.1 509 62.3
SMO134G0292 Selaginella moellendorffii HOM05D006382 ORTHO05D008938 2.9e-172 609.4 445 63.8
Ah.05g180140 Amaranthus hybridus HOM05D006382 ORTHO05D008938 1.2e-170 604.0 474 62.0
AUR62022620 Chenopodium quinoa HOM05D006382 ORTHO05D008938 2.1e-170 603.2 491 60.1
Gohir.D11G097200 Gossypium hirsutum HOM05D006382 ORTHO05D008938 2.6e-168 596.3 415 69.2
Manes.05G029200 Manihot esculenta HOM05D006382 ORTHO05D008938 2.3e-161 573.2 410 70.2
Oeu063676.1 Olea europaea HOM05D006382 ORTHO05D008938 9.8e-136 488.0 479 55.9
TAR629G1903 Trochodendron aralioides HOM05D006382 ORTHO05D008938 7.8e-133 478.4 328 68.9
Cre03.g193700 Chlamydomonas reinhardtii HOM05D006382 ORTHO05D008938 1.6e-125 454.1 444 51.6
Potri.014G090601 Populus trichocarpa HOM05D006382 ORTHO05D008938 3.9e-124 449.5 317 69.4
MCO14G065 Micromonas commoda HOM05D006382 ORTHO05D008938 3.9e-116 422.9 465 48.2
Zm00001eb375690 Zea mays HOM05D006382 ORTHO05D008938 8.4e-111 405.2 289 68.9
PRCOL_00004635 Prasinoderma coloniale HOM05D006382 ORTHO05D008938 1.1e-105 388.3 485 44.9
Cfa025852 Carpinus fangiana HOM05D006382 ORTHO05D008938 1.1e-81 308.5 449 41.2
SMO139G0016 Selaginella moellendorffii HOM05D006382 ORTHO05D376983 5.5e-38 163.3 225 39.6
Os06g0163600 Oryza sativa ssp. japonica HOM05D006382 ORTHO05D008938 1.2e-37 162.2 100 72.0
Hma1.2p1_0036F.1_g022810 Hydrangea macrophylla HOM05D006382 ORTHO05D228417 3.5e-32 144.1 95 71.6
Hma1.2p1_0036F.1_g022815 Hydrangea macrophylla HOM05D006382 ORTHO05D228242 3.5e-32 144.1 95 71.6
Hma1.2p1_0515F.1_g170355 Hydrangea macrophylla HOM05D006382 ORTHO05D228454 3.5e-32 144.1 95 71.6
Hma1.2p1_1019F.1_g248455 Hydrangea macrophylla HOM05D006382 ORTHO05D228422 3.5e-32 144.1 95 71.6
SMO165G0168 Selaginella moellendorffii HOM05D006382 ORTHO05D374182 4.1e-25 120.6 280 32.1
BolC4t24936H Brassica oleracea HOM05D006382 ORTHO05D024383 1.1e-22 112.5 78 64.1
Solyc02g083330.2 Solanum lycopersicum HOM05D006382 ORTHO05D391834 1.4e-20 105.5 49 98.0
C04p33670 Brassica napus HOM05D006382 ORTHO05D024383 7.1e-17 93.2 57 73.7
BcaB04g18088 Brassica carinata HOM05D006382 ORTHO05D024383 3.4e-11 74.3 43 88.4
CsaV3_3G008600 Cucumis sativus L. HOM05D006382 ORTHO05D172594 7.8e-08 63.2 40 67.5
Ah.05g180150 Amaranthus hybridus HOM05D006382 ORTHO05D060446 1.3e-07 62.4 103 44.7
Actinidia17930 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.9e-06 58.5 41 73.2


User provided reference genes

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