Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 3.4e-228 794.7 402 100.0
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 4.2e-186 654.8 375 91.2
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 3.4e-151 538.9 318 89.0
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 5.8e-119 431.8 318 72.6
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 9.9e-119 431.0 319 73.7
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.6e-111 406.4 318 69.2
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 8.8e-67 258.5 288 52.4
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 5.7e-58 229.2 280 50.4
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 2.4e-56 223.8 278 49.3
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 3.5e-55 219.9 278 48.2
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 6.1e-52 209.1 324 44.1
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 3.1e-48 196.8 318 42.1
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 3.8e-46 189.9 329 38.9
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 9.4e-45 185.3 333 41.7
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 3.0e-43 180.3 335 39.1
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 9.8e-42 175.3 330 38.5
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 6.3e-41 172.6 322 37.3
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 4.1e-40 169.9 348 38.5
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 1.2e-39 168.3 328 39.9
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 2.7e-39 167.2 329 39.2
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 7.7e-39 165.6 320 38.8
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 2.3e-38 164.1 331 37.5
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 2.9e-38 163.7 339 37.2
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 6.5e-38 162.5 331 41.1
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 2.5e-37 160.6 333 39.3
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 1.6e-36 157.9 328 36.9
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 3.0e-35 153.7 325 36.0
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 8.8e-35 152.1 327 35.8
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 1.2e-34 151.8 322 38.2
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 1.2e-34 151.8 321 35.8
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 1.3e-33 148.3 327 36.4
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 1.3e-33 148.3 327 35.2
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 2.8e-33 147.1 321 37.4
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 2.8e-33 147.1 321 37.4
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 3.7e-33 146.7 326 39.0
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 8.3e-33 145.6 330 36.4
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 1.1e-32 145.2 321 35.8
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 1.1e-32 145.2 327 37.0
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 4.1e-32 143.3 312 37.2
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 9.2e-32 142.1 324 34.6
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 9.2e-32 142.1 323 36.2
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 1.6e-31 141.4 326 35.9
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 3.5e-31 140.2 320 37.8
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 4.5e-31 139.8 323 36.5
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 4.5e-31 139.8 347 33.1
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 5.9e-31 139.4 330 36.1
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 7.8e-31 139.0 290 40.7
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 7.8e-31 139.0 328 33.8
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 7.8e-31 139.0 320 38.4
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 1.0e-30 138.7 345 34.8
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 1.3e-30 138.3 327 36.7
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 1.7e-30 137.9 353 32.0
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 2.3e-30 137.5 327 36.1
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 5.0e-30 136.3 320 35.6
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 6.6e-30 136.0 342 33.0
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 1.9e-29 134.4 323 35.6
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 2.5e-29 134.0 322 33.2
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 5.6e-29 132.9 341 34.6
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 7.3e-29 132.5 324 34.9
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 9.5e-29 132.1 328 34.5
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 1.2e-28 131.7 325 34.2
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 1.2e-28 131.7 325 35.1
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 1.6e-28 131.3 330 33.6
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 2.1e-28 131.0 315 34.6
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 4.7e-28 129.8 354 35.3
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 6.1e-28 129.4 324 34.3
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 8.0e-28 129.0 330 32.7
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 3.0e-27 127.1 326 31.9
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 3.0e-27 127.1 326 33.7
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 5.2e-27 126.3 290 39.3
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 5.2e-27 126.3 324 34.6
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 6.8e-27 125.9 321 34.0
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 6.8e-27 125.9 321 34.0
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 8.9e-27 125.6 321 33.6
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.6e-26 124.0 321 33.6
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.4e-26 123.2 321 33.6
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.7e-26 122.9 323 34.7
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.2e-25 120.9 316 33.5
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.1e-24 118.6 316 30.4
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.1e-24 118.6 316 30.4
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.0e-22 112.1 114 50.0
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 1.1e-21 108.6 332 31.6
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 2.1e-20 104.4 330 29.4
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 4.7e-20 103.2 313 30.7
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 6.2e-20 102.8 65 73.8
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 7.5e-18 95.9 339 33.0
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.3e-17 95.1 255 32.2
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 3.7e-17 93.6 322 28.9
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 6.4e-17 92.8 325 30.8
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 8.3e-17 92.4 318 31.4
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.4e-16 91.7 81 55.6
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 2.4e-16 90.9 325 32.9
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 7.0e-16 89.4 327 27.5
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 1.2e-15 88.6 331 28.1
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 3.5e-15 87.0 322 30.1
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 7.8e-15 85.9 324 32.1
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 5.0e-14 83.2 321 29.3
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 6.6e-14 82.8 319 28.5
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 1.1e-13 82.0 313 30.0
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 4.3e-13 80.1 91 50.5
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 7.3e-13 79.3 325 26.8
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 9.5e-13 79.0 320 28.8
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 9.5e-13 79.0 322 29.2
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 1.6e-12 78.2 333 26.7
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 2.1e-12 77.8 321 29.9
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 3.6e-12 77.0 318 30.5
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 3.6e-12 77.0 316 31.0
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 1.4e-11 75.1 322 29.8
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 2.3e-11 74.3 322 30.4
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 2.3e-11 74.3 322 30.4
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 2.3e-11 74.3 322 30.4
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 3.1e-11 73.9 282 25.9
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 8.9e-11 72.4 318 27.7
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 1.2e-10 72.0 135 37.0
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 1.5e-10 71.6 48 79.2
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 1.5e-10 71.6 54 72.2
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 5.8e-10 69.7 324 27.8
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 3.7e-09 67.0 66 57.6
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 3.7e-09 67.0 66 57.6
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 9.2e-08 62.4 260 31.2
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 1.2e-07 62.0 51 62.7
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 6.0e-07 59.7 51 58.8
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 3.0e-06 57.4 96 34.4
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 3.9e-06 57.0 44 72.7


User provided reference genes

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