Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 2251.1 1126 100.0
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 2236.1 1126 99.4
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 2161.0 1124 96.0
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 2077.4 1197 88.8
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 2073.5 1162 90.6
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 2016.5 1079 93.7
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1924.4 1130 84.2
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1904.4 1124 83.2
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1882.5 1127 82.0
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1879.8 1132 82.9
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1875.5 1129 81.9
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1873.6 1136 81.9
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1863.6 1127 81.5
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1863.6 1129 81.4
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1861.7 1130 82.4
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1858.6 1131 80.7
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1856.3 1127 80.9
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1855.9 1127 80.7
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1855.1 1129 80.8
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1853.2 1128 81.8
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1851.3 1130 81.9
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1851.3 1129 81.0
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1849.7 1130 81.2
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1848.6 1134 81.1
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1848.6 1155 80.0
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1848.2 1130 81.1
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1847.0 1129 81.0
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1846.2 1125 81.5
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1841.2 1127 80.0
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1839.7 1100 82.2
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1837.4 1132 79.9
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1836.2 1129 80.4
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1833.9 1130 80.4
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1833.5 1128 81.1
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1824.3 1132 79.8
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1823.1 1133 79.9
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1819.3 1133 79.3
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1816.2 1129 79.4
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1814.7 1127 79.3
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1813.1 1122 80.1
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1810.8 1144 78.6
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1808.5 1129 79.1
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1808.1 1127 79.5
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1807.3 1129 78.8
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1807.3 1131 79.4
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1807.3 1081 82.7
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1805.8 1190 76.2
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1804.3 1128 78.8
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1803.9 1129 78.5
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1801.2 1130 79.4
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1800.8 1147 78.3
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1800.4 1128 79.4
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1800.0 1130 78.2
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1799.3 1129 78.1
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1796.9 1132 78.4
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1781.5 1125 78.4
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1772.3 1130 79.0
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1771.5 1125 78.2
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1768.4 1127 77.7
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1767.3 1125 77.9
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1765.0 1129 77.2
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1763.8 1124 78.1
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1759.6 1126 78.2
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1750.7 1190 74.3
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1745.7 1129 77.1
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1737.6 1127 76.7
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1721.8 1321 68.9
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1719.9 1124 76.0
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1709.9 1078 78.5
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1707.2 1128 75.3
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1703.7 1159 75.9
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1703.3 1040 81.0
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1688.7 1259 70.0
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1688.3 1129 75.5
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1677.9 1126 73.8
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1673.7 1126 73.6
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1661.4 1147 73.0
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1659.4 1126 73.3
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1654.4 1126 73.1
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1645.6 1127 72.7
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1640.6 1126 73.1
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1640.6 1126 73.1
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1637.1 1128 72.9
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1624.4 1164 72.3
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1623.6 1126 72.6
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1622.8 1126 72.6
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1582.0 1159 70.0
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1547.3 956 80.1
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1538.5 1126 69.0
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1535.8 1121 69.6
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1533.9 1126 68.3
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1525.0 1127 68.3
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1517.7 1166 68.0
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1460.7 1110 67.7
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1454.9 837 85.5
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1452.2 842 85.0
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1442.9 871 81.5
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1393.6 983 72.9
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1369.8 862 77.4
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1275.0 1132 60.4
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1216.4 825 72.8
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1209.5 787 75.9
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1189.5 688 84.9
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1138.3 1144 52.1
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 7.7e-312 1074.3 1526 43.0
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 1.8e-306 1056.2 1127 50.0
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 2.5e-300 1035.8 1153 49.1
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 1.0e-285 987.3 1148 46.7
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 6.3e-272 941.4 671 68.4
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 3.8e-269 932.2 1380 38.9
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.0e-261 907.5 585 79.1
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 2.0e-257 893.3 532 83.6
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 5.7e-257 891.7 680 68.5
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 6.3e-248 861.7 741 60.1
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 3.1e-210 736.5 454 78.6
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 5.3e-202 709.1 554 66.2
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 3.8e-200 703.0 435 80.5
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 3.4e-185 653.3 434 72.8
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.6e-179 634.4 593 53.3
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 2.4e-146 524.2 454 59.9
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 6.3e-139 499.6 312 78.2
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 4.9e-131 473.4 380 68.9
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 1.1e-130 472.2 326 78.8
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 6.4e-107 393.3 1078 29.6
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 1.2e-89 335.9 770 31.9
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 3.9e-88 330.9 1453 23.3
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 2.7e-81 308.1 293 56.3
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.4e-77 295.8 232 69.4
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.4e-77 295.8 190 76.8
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 8.7e-72 276.6 194 69.1
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 1.3e-67 262.7 198 72.7
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 7.1e-66 256.9 297 50.5
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 3.0e-64 251.5 206 60.7
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 8.7e-64 250.0 313 41.9
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 4.2e-58 231.1 166 65.7
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.4e-56 226.1 212 57.5
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.3e-54 219.5 595 32.6
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 3.4e-52 211.5 172 61.0
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 6.7e-48 197.2 218 55.5
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 4.4e-47 194.5 228 46.9
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 1.8e-45 189.1 218 52.3
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 2.1e-41 175.6 327 39.8
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 3.5e-36 158.3 773 24.6
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 2.1e-33 149.1 87 83.9
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 2.3e-32 145.6 87 82.8
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 8.8e-32 143.7 183 48.1
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.0e-27 130.2 85 68.2
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 2.2e-27 129.0 85 74.1
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.0e-23 115.9 139 51.1
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 7.5e-23 114.0 161 44.1
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 2.0e-20 105.9 74 68.9
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 3.5e-20 105.1 65 75.4
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 1.0e-19 103.6 161 40.4
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 2.5e-18 99.0 67 65.7
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 3.6e-17 95.1 69 66.7
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 4.7e-17 94.7 95 55.8
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 3.0e-16 92.0 60 73.3
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.7e-14 86.3 80 57.5
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.4e-13 83.2 56 71.4
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 9.2e-13 80.5 49 79.6
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 3.5e-12 78.6 67 55.2
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 7.8e-12 77.4 45 77.8
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 1.3e-11 76.6 56 62.5
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 1.9e-10 72.8 48 72.9
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 2.5e-10 72.4 51 66.7
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.6e-09 69.7 43 67.4
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 1.8e-08 66.2 70 50.0
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 2.0e-07 62.8 34 73.5
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 4.4e-07 61.6 41 63.4


User provided reference genes

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