Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 0.0e+00 1674.1 826 100.0
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 0.0e+00 1632.8 826 97.5
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 0.0e+00 1531.5 826 92.4
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 0.0e+00 1413.3 849 82.6
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 0.0e+00 1400.6 839 83.2
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 0.0e+00 1218.4 773 79.6
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 0.0e+00 1109.4 858 69.0
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 1.5e-294 1016.1 840 60.8
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 2.8e-293 1011.9 837 59.7
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 1.5e-291 1006.1 866 58.9
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 4.9e-290 1001.1 789 62.2
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 4.9e-290 1001.1 828 60.9
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.4e-289 999.6 831 59.9
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 2.1e-288 995.7 841 59.8
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 9.0e-284 980.3 784 61.0
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.3e-282 976.5 785 61.5
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 9.3e-281 970.3 813 60.3
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 2.7e-280 968.8 821 59.7
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 6.0e-280 967.6 815 58.9
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 9.6e-278 960.3 793 59.6
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 1.3e-277 959.9 774 62.0
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 9.0e-276 953.7 836 57.7
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.3e-271 939.9 826 57.4
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 1.1e-270 936.8 813 58.3
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 9.6e-270 933.7 836 57.4
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 6.2e-269 931.0 793 59.3
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 2.4e-268 929.1 820 58.2
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 2.0e-267 926.0 819 56.5
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 1.3e-266 923.3 833 56.3
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 4.2e-265 918.3 825 55.9
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 9.3e-265 917.1 827 55.9
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.8e-263 912.9 773 58.2
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 5.1e-263 911.4 798 58.0
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 8.7e-263 910.6 815 57.1
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 4.3e-262 908.3 788 58.1
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 2.6e-259 899.0 811 56.2
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 1.0e-258 897.1 809 56.1
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 1.7e-258 896.3 820 56.8
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 2.2e-258 896.0 834 54.3
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 2.9e-258 895.6 815 56.9
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.5e-257 892.5 807 55.5
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 1.6e-256 889.8 828 56.3
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 7.9e-256 887.5 835 54.9
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 1.8e-255 886.3 825 55.9
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 3.9e-255 885.2 769 58.6
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 5.1e-255 884.8 804 56.0
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 1.9e-254 882.9 820 56.5
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 2.5e-254 882.5 786 57.9
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 1.8e-252 876.3 821 55.4
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 1.3e-250 870.2 785 57.3
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 1.7e-250 869.8 737 59.7
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.2e-250 869.4 819 55.2
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 3.8e-250 868.6 819 55.2
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 8.5e-250 867.5 787 56.4
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 1.4e-249 866.7 752 55.5
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 1.9e-249 866.3 827 54.4
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 2.1e-248 862.8 840 53.3
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 4.7e-248 861.7 824 54.4
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 6.1e-248 861.3 769 55.8
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.4e-247 860.1 768 56.2
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 8.8e-247 857.4 785 54.8
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 3.3e-246 855.5 768 54.9
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 4.4e-246 855.1 813 54.1
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 2.2e-245 852.8 788 55.2
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 6.3e-245 851.3 799 53.7
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 9.1e-244 847.4 796 54.6
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 1.5e-243 846.7 775 56.8
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 2.2e-242 842.8 824 53.5
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 1.1e-241 840.5 801 53.3
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.1e-241 840.5 836 53.0
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 9.4e-241 837.4 809 52.7
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 6.1e-240 834.7 833 53.2
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 1.0e-239 833.9 796 53.3
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.2e-237 826.2 776 55.4
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 3.7e-237 825.5 820 52.4
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 2.6e-235 819.3 824 52.3
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.5e-235 818.9 822 51.5
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 1.5e-233 813.5 798 52.3
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 3.2e-233 812.4 818 50.4
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 4.2e-233 812.0 796 53.0
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 6.1e-232 808.1 744 56.9
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.8e-231 806.6 822 50.5
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 3.0e-231 805.8 785 53.4
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 2.0e-230 803.1 798 53.0
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.3e-230 802.4 838 49.8
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 7.5e-230 801.2 820 52.9
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 7.5e-230 801.2 816 52.5
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 3.7e-229 798.9 781 53.0
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 6.3e-229 798.1 780 51.4
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 3.5e-227 792.3 799 52.2
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 1.0e-226 790.8 796 51.8
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 1.0e-226 790.8 796 51.8
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 1.3e-226 790.4 782 52.7
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 3.8e-226 788.9 817 51.4
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 6.5e-226 788.1 821 51.3
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 1.1e-225 787.3 782 52.4
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 1.6e-224 783.5 833 50.9
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.7e-224 782.7 801 50.9
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.5e-222 776.9 680 59.0
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 4.8e-221 771.9 716 56.3
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 1.8e-220 770.0 779 51.6
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 2.9e-218 762.7 805 50.3
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 3.3e-217 759.2 727 55.4
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 8.9e-215 751.1 842 48.6
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 4.4e-214 748.8 822 48.2
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 9.8e-214 747.7 733 53.8
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.2e-211 740.7 653 57.0
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 5.9e-211 738.4 839 46.5
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 8.6e-210 734.6 675 55.6
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 4.0e-207 725.7 815 46.9
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 3.5e-203 712.6 870 45.2
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.2e-200 704.1 666 52.7
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 8.9e-199 698.0 823 45.1
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 1.3e-197 694.1 651 55.5
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 7.8e-195 684.9 835 44.7
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 2.6e-190 669.8 789 44.6
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 7.3e-185 651.7 950 41.6
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 2.1e-179 633.6 781 41.9
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 1.2e-171 607.8 690 47.5
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 2.7e-171 606.7 516 57.8
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 1.8e-167 594.0 610 51.6
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 3.7e-160 569.7 710 45.2
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 2.5e-156 557.0 718 44.0
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 5.5e-148 529.3 384 65.6
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 1.1e-132 478.4 459 52.7
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.6e-131 473.4 715 39.3
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 6.7e-130 469.2 531 46.1
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 2.0e-129 467.6 720 38.8
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.2e-125 454.1 341 65.4
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 1.7e-120 438.0 341 64.2
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 4.4e-105 386.7 421 48.7
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 9.1e-103 379.0 802 30.8
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 3.5e-102 377.1 327 57.5
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 8.0e-99 365.9 592 37.0
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 2.7e-94 350.9 919 27.9
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 1.3e-88 332.0 402 45.0
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 7.3e-84 316.2 455 38.5
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 4.0e-82 310.5 339 47.5
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 2.6e-81 307.8 340 47.6
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 7.6e-73 279.6 299 48.5
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 1.7e-64 251.9 379 38.3
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 4.8e-59 233.8 199 57.3
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 2.0e-57 228.4 257 47.5
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.5e-52 212.2 175 60.6
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 3.2e-47 194.5 178 56.7
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 1.5e-28 132.5 116 49.1
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.9e-23 115.5 141 44.0
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.3e-21 108.6 148 38.5
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 8.8e-21 106.7 107 49.5
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 1.5e-20 105.9 87 64.4
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 4.7e-14 84.3 66 53.0
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 8.2e-11 73.6 104 41.3
CBR_g17143 Chara braunii HOM05D004502 ORTHO05D005579 4.1e-10 71.2 128 29.7
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 2.6e-09 68.6 66 53.0
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 2.6e-09 68.6 35 82.9
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 4.5e-09 67.8 44 61.4
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 1.7e-08 65.9 73 46.6
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 2.9e-08 65.1 47 61.7
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 2.7e-06 58.5 198 27.3


User provided reference genes

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