Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 1.0e-151 540.0 274 100.0
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 1.4e-137 493.0 309 83.5
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.1e-116 423.7 286 79.7
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 1.2e-115 420.2 312 72.4
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 3.5e-115 418.7 309 71.8
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 5.9e-115 417.9 285 78.9
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 2.7e-91 339.3 313 58.1
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 7.3e-89 331.3 313 57.2
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 2.3e-87 326.2 317 56.8
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 2.0e-86 323.2 312 57.1
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 1.2e-83 313.9 313 55.6
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 2.0e-83 313.2 313 55.3
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 7.8e-83 311.2 314 56.1
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 4.7e-80 302.0 316 52.5
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 5.2e-79 298.5 306 52.3
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 1.3e-77 293.9 301 53.2
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 2.4e-76 289.7 307 52.1
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 7.8e-75 284.6 306 51.6
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 7.8e-75 284.6 283 56.9
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 1.0e-74 284.3 291 54.3
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 6.6e-74 281.6 273 57.1
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 1.5e-73 280.4 318 49.1
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 4.3e-73 278.9 310 50.6
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 9.5e-73 277.7 293 54.3
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 9.5e-73 277.7 322 49.1
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 2.8e-72 276.2 306 49.7
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 3.6e-72 275.8 307 50.8
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 4.7e-72 275.4 307 50.8
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 4.7e-72 275.4 305 52.1
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 1.1e-71 274.2 292 52.7
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 8.9e-71 271.2 317 49.5
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 1.5e-70 270.4 313 47.6
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 3.4e-70 269.2 309 48.9
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 7.5e-70 268.1 307 49.5
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 1.3e-69 267.3 309 48.2
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 8.3e-69 264.6 312 49.0
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.4e-68 263.8 305 49.8
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 4.1e-68 262.3 315 48.9
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 7.1e-68 261.5 322 46.6
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 2.7e-67 259.6 337 44.5
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 2.7e-67 259.6 267 56.6
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 2.7e-67 259.6 319 47.6
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 3.9e-66 255.8 318 47.2
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 6.6e-66 255.0 337 46.0
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 1.1e-65 254.2 319 47.3
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 1.5e-65 253.8 315 46.3
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 9.5e-65 251.1 314 45.2
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 2.8e-64 249.6 312 47.8
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 3.6e-64 249.2 311 48.6
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 8.1e-64 248.1 311 46.6
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 8.1e-64 248.1 315 46.0
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 8.1e-64 248.1 323 44.6
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 8.1e-64 248.1 315 46.0
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.1e-63 247.7 315 46.0
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 5.2e-63 245.4 315 45.7
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 5.2e-63 245.4 316 45.3
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 6.8e-63 245.0 315 45.7
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 8.9e-63 244.6 309 49.2
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 1.2e-62 244.2 324 45.7
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 3.4e-62 242.7 315 45.4
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 5.8e-62 241.9 316 45.3
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 7.6e-62 241.5 323 44.9
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 1.3e-61 240.7 309 46.6
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.3e-61 240.7 315 45.4
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 4.9e-61 238.8 306 47.4
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 1.4e-60 237.3 301 48.5
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 5.4e-60 235.3 317 43.2
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 9.2e-60 234.6 307 44.3
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 9.2e-60 234.6 315 47.0
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 1.6e-59 233.8 307 44.6
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 2.1e-59 233.4 312 46.5
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 2.1e-59 233.4 316 44.9
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 4.6e-59 232.3 318 42.8
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 1.0e-58 231.1 281 47.3
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 1.0e-58 231.1 283 50.2
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 3.9e-58 229.2 281 46.3
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 5.1e-58 228.8 284 48.9
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 6.6e-58 228.4 316 43.7
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 1.1e-57 227.6 311 43.7
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 1.1e-57 227.6 314 44.6
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 5.6e-57 225.3 314 44.3
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 9.6e-57 224.6 216 55.6
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 9.6e-57 224.6 241 52.3
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 1.2e-56 224.2 292 46.2
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 2.1e-56 223.4 272 43.8
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 2.1e-56 223.4 318 42.5
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 2.1e-56 223.4 241 52.7
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 4.7e-56 222.2 325 43.4
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 6.2e-56 221.9 282 47.2
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 1.4e-55 220.7 293 45.4
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 1.8e-55 220.3 295 45.8
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 6.9e-55 218.4 277 44.0
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 1.2e-54 217.6 310 44.8
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 3.4e-54 216.1 276 44.2
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 3.4e-54 216.1 279 44.8
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 4.4e-54 215.7 279 47.3
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 4.4e-54 215.7 321 41.7
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 9.9e-54 214.5 278 45.0
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 2.9e-53 213.0 278 44.6
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 8.4e-53 211.5 262 47.7
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 1.1e-52 211.1 273 41.0
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 2.4e-52 209.9 272 43.0
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 3.2e-52 209.5 280 46.1
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 7.1e-52 208.4 283 45.2
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 9.3e-52 208.0 287 43.2
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 2.1e-51 206.8 301 44.2
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 1.7e-50 203.8 294 42.9
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 1.7e-50 203.8 284 43.0
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 2.5e-49 199.9 317 40.4
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 4.3e-49 199.1 280 45.0
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 2.1e-48 196.8 294 41.5
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 4.8e-48 195.7 239 44.8
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 6.2e-48 195.3 279 45.5
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 8.1e-48 194.9 268 42.2
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 1.1e-47 194.5 277 43.3
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 1.4e-47 194.1 298 43.0
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 1.8e-47 193.7 338 38.2
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 3.1e-47 193.0 240 47.9
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 4.0e-47 192.6 296 42.6
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 5.3e-47 192.2 270 41.5
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 9.0e-47 191.4 266 42.1
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 9.0e-47 191.4 266 42.1
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 1.5e-46 190.7 263 42.6
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 1.5e-46 190.7 263 42.6
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 2.6e-46 189.9 321 39.6
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 9.9e-46 188.0 313 40.3
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.7e-45 187.2 254 44.5
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 2.2e-45 186.8 284 40.8
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 8.4e-45 184.9 276 46.4
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 8.4e-45 184.9 274 39.8
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 2.7e-43 179.9 268 41.4
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 2.7e-43 179.9 296 38.2
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 4.6e-43 179.1 256 42.2
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 7.4e-41 171.8 319 38.9
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 7.4e-41 171.8 336 36.3
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 1.6e-40 170.6 245 44.1
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 8.1e-40 168.3 280 41.1
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 1.1e-39 167.9 286 39.2
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 1.8e-39 167.2 306 39.9
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 1.8e-39 167.2 265 37.7
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 1.8e-39 167.2 265 37.7
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 2.0e-38 163.7 283 38.5
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 2.0e-38 163.7 269 40.1
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 1.7e-37 160.6 276 39.5
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 3.8e-37 159.5 279 39.1
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 6.4e-37 158.7 306 36.6
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 6.4e-37 158.7 278 38.8
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 7.1e-36 155.2 273 37.4
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 1.6e-35 154.1 232 41.4
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 5.1e-34 149.1 283 36.7
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 5.1e-34 149.1 283 36.7
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 8.7e-34 148.3 272 37.1
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 8.7e-34 148.3 261 36.4
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 2.4e-31 140.2 232 37.9
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 4.5e-30 136.0 308 32.5
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 1.0e-29 134.8 294 34.0
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 2.9e-29 133.3 298 33.6
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.4e-28 131.0 196 44.4
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 2.7e-27 126.7 261 32.6
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 6.7e-26 122.1 249 36.1
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 3.3e-25 119.8 173 38.7
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 2.8e-24 116.7 250 31.6
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 3.7e-24 116.3 112 48.2
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 4.8e-24 115.9 302 32.1
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 9.0e-23 111.7 285 30.5
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 1.2e-22 111.3 246 32.9
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 5.9e-22 109.0 279 29.7
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 1.7e-21 107.5 267 32.2
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 2.5e-20 103.6 357 25.2
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 3.0e-18 96.7 237 32.1
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 4.3e-17 92.8 272 28.3
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 5.9e-14 82.4 267 28.5
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 2.9e-13 80.1 209 30.1
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 3.8e-13 79.7 91 44.0
C04p06870 Brassica napus HOM05D001925 ORTHO05D004257 8.5e-13 78.6 65 49.2
BolC4t22309H Brassica oleracea HOM05D001925 ORTHO05D004257 8.5e-13 78.6 65 49.2
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 1.1e-12 78.2 209 29.7
A05p05940 Brassica napus HOM05D001925 ORTHO05D004257 1.9e-12 77.4 63 49.2
BraA05t19557Z Brassica rapa HOM05D001925 ORTHO05D004257 1.9e-12 77.4 63 49.2
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 3.6e-11 73.2 85 47.1
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 7.9e-11 72.0 85 47.1
Lj6P578T28 Lonicera japonica HOM05D001925 ORTHO05D004257 6.7e-10 68.9 146 34.2
Lj7P510T18 Lonicera japonica HOM05D001925 ORTHO05D004257 1.7e-08 64.3 146 33.6
Oeu051126.2 Olea europaea HOM05D001925 ORTHO05D004257 8.2e-08 62.0 98 39.8
Lj6C572T1 Lonicera japonica HOM05D001925 ORTHO05D004257 1.4e-07 61.2 52 65.4
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 6.9e-07 58.9 88 35.2


User provided reference genes

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