Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g038320 Solanum pennellii HOM05D006065 ORTHO05D007672 9.7e-75 283.5 153 100.0
PGSC0003DMG400000036 Solanum tuberosum HOM05D006065 ORTHO05D007672 7.0e-65 250.8 149 92.6
Solyc01g094510.2 Solanum lycopersicum HOM05D006065 ORTHO05D007672 5.7e-51 204.5 124 93.5
CAN.G78.55 Capsicum annuum HOM05D006065 ORTHO05D007672 1.1e-49 200.3 144 79.2
Nitab4.5_0008002g0050 Nicotiana tabacum HOM05D006065 ORTHO05D007672 1.0e-39 167.2 168 64.9
Nitab4.5_0005277g0010 Nicotiana tabacum HOM05D006065 ORTHO05D007672 7.5e-35 151.0 159 59.1
Dinv43807 Davidia involucrata HOM05D006065 ORTHO05D007672 1.9e-30 136.3 153 52.9
Peaxi162Scf00020g00240 Petunia axillaris HOM05D006065 ORTHO05D007672 4.0e-28 128.6 130 59.2
Dinv32472 Davidia involucrata HOM05D006065 ORTHO05D007672 5.2e-28 128.3 132 56.1
Cc02_g37900 Coffea canephora HOM05D006065 ORTHO05D007672 6.8e-28 127.9 123 60.2
MSTRG.4858 Avicennia marina HOM05D006065 ORTHO05D007672 4.1e-25 118.6 135 50.4
Thecc.01G360200 Theobroma cacao HOM05D006065 ORTHO05D007672 4.1e-25 118.6 126 54.8
COL.COLO4_12704 Corchorus olitorius HOM05D006065 ORTHO05D007672 7.0e-25 117.9 126 50.8
DCAR_006926 Daucus carota HOM05D006065 ORTHO05D007672 1.6e-24 116.7 147 49.0
Atru.chr5.461 Acer truncatum HOM05D006065 ORTHO05D007672 7.8e-24 114.4 134 53.0
Potri.014G083100 Populus trichocarpa HOM05D006065 ORTHO05D007672 1.0e-23 114.0 129 55.0
Gorai.004G158400 Gossypium raimondii HOM05D006065 ORTHO05D007672 3.9e-23 112.1 135 48.9
CiPaw.01G060100 Carya illinoinensis HOM05D006065 ORTHO05D007672 5.0e-23 111.7 137 48.9
Gohir.A08G131000 Gossypium hirsutum HOM05D006065 ORTHO05D007672 5.0e-23 111.7 130 50.8
Actinidia10016 Actinidia chinensis HOM05D006065 ORTHO05D007672 8.6e-23 110.9 129 48.8
vmacro13279 Vaccinium macrocarpon HOM05D006065 ORTHO05D007672 1.5e-22 110.2 142 47.9
Actinidia20914 Actinidia chinensis HOM05D006065 ORTHO05D007672 1.9e-22 109.8 134 49.3
Migut.N01441 Erythranthe guttata HOM05D006065 ORTHO05D007672 2.5e-22 109.4 158 48.1
Sabra14G0060500 Salix brachista HOM05D006065 ORTHO05D007672 2.5e-22 109.4 127 53.5
Gohir.D08G152500 Gossypium hirsutum HOM05D006065 ORTHO05D007672 4.3e-22 108.6 135 47.4
PGSC0003DMG400021646 Solanum tuberosum HOM05D006065 ORTHO05D007672 4.3e-22 108.6 118 56.8
Oeu010611.1 Olea europaea HOM05D006065 ORTHO05D007672 7.3e-22 107.8 142 44.4
QL08p049008 Quercus lobata HOM05D006065 ORTHO05D007672 9.5e-22 107.5 126 48.4
Sc01g0003370 Simmondsia chinensis HOM05D006065 ORTHO05D007672 1.2e-21 107.1 128 46.1
RcHm_v2.0_Chr1g0355101 Rosa chinensis HOM05D006065 ORTHO05D007672 1.6e-21 106.7 130 52.3
Duzib138G1923 Durio zibethinus HOM05D006065 ORTHO05D007672 6.2e-21 104.8 126 50.0
Hund16927 Selenicereus undatus HOM05D006065 ORTHO05D007672 1.8e-20 103.2 133 46.6
Solyc05g049940.3 Solanum lycopersicum HOM05D006065 ORTHO05D007672 1.8e-20 103.2 114 55.3
Ciclev10022632m.g Citrus clementina HOM05D006065 ORTHO05D007672 3.1e-20 102.4 130 48.5
Sed0025321 Sechium edule HOM05D006065 ORTHO05D007672 3.1e-20 102.4 141 46.8
Sopen05g028300 Solanum pennellii HOM05D006065 ORTHO05D007672 3.1e-20 102.4 114 54.4
FAN10G0270 Fragaria x ananassa HOM05D006065 ORTHO05D007672 5.2e-20 101.7 136 48.5
Nitab4.5_0001702g0100 Nicotiana tabacum HOM05D006065 ORTHO05D007672 5.2e-20 101.7 168 47.6
CsaV3_3G008970 Cucumis sativus L. HOM05D006065 ORTHO05D007672 6.8e-20 101.3 141 44.7
unitig_8.g3395 Utricularia gibba HOM05D006065 ORTHO05D007672 1.2e-19 100.5 135 47.4
CANSAT56G3634 Cannabis sativa HOM05D006065 ORTHO05D007672 1.5e-19 100.1 132 47.0
ClCG05G001580 Citrullus lanatus HOM05D006065 ORTHO05D007672 1.5e-19 100.1 138 46.4
FAN01G0390 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.5e-19 100.1 131 48.9
FAN03G2883 Fragaria x ananassa HOM05D006065 ORTHO05D007672 2.0e-19 99.8 133 47.4
Cpa.g.sc18.247 Carica papaya HOM05D006065 ORTHO05D007672 2.6e-19 99.4 144 44.4
TAR629G3005 Trochodendron aralioides HOM05D006065 ORTHO05D007672 3.4e-19 99.0 142 44.4
Hma1.2p1_0001F.1_g001420 Hydrangea macrophylla HOM05D006065 ORTHO05D007672 4.4e-19 98.6 171 39.8
SalBow3G2602 Salvia bowleyana HOM05D006065 ORTHO05D007672 4.4e-19 98.6 144 43.8
FAN06G3027 Fragaria x ananassa HOM05D006065 ORTHO05D007672 5.8e-19 98.2 124 50.0
FAN06G3847 Fragaria x ananassa HOM05D006065 ORTHO05D007672 7.5e-19 97.8 124 50.0
SGA_v2.0_scaffold11G05664 Striga asiatica HOM05D006065 ORTHO05D007672 9.8e-19 97.4 138 44.9
FvH4_7g14190 Fragaria vesca HOM05D006065 ORTHO05D007672 1.7e-18 96.7 131 48.9
Lsat_1_v5_gn_7_4500 Lactuca sativa HOM05D006065 ORTHO05D007672 1.7e-18 96.7 132 43.9
Manes.05G035300 Manihot esculenta HOM05D006065 ORTHO05D007672 3.7e-18 95.5 139 43.2
Lj1g0009386 Lotus japonicus HOM05D006065 ORTHO05D007672 4.9e-18 95.1 132 45.5
Prupe.2G168300 Prunus persica HOM05D006065 ORTHO05D007672 4.9e-18 95.1 127 44.9
Cfa003936 Carpinus fangiana HOM05D006065 ORTHO05D007672 8.3e-18 94.4 144 41.0
MSTRG.28221 Avicennia marina HOM05D006065 ORTHO05D007672 1.1e-17 94.0 126 41.3
Duzib133G1075 Durio zibethinus HOM05D006065 ORTHO05D007672 1.1e-17 94.0 126 46.8
Glyma.18G230000 Glycine max HOM05D006065 ORTHO05D007672 1.4e-17 93.6 129 46.5
Medtr7g076690 Medicago truncatula HOM05D006065 ORTHO05D007672 1.4e-17 93.6 128 45.3
TWI59G0879 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 1.4e-17 93.6 132 43.9
Gorai.007G098900 Gossypium raimondii HOM05D006065 ORTHO05D007672 1.9e-17 93.2 129 44.2
TAR374G1295 Trochodendron aralioides HOM05D006065 ORTHO05D007672 1.9e-17 93.2 136 42.6
Haze_15490 Corylus avellana HOM05D006065 ORTHO05D007672 4.1e-17 92.0 174 37.4
GSVIVG01018349001 Vitis vinifera HOM05D006065 ORTHO05D007672 4.1e-17 92.0 116 44.8
Glyma.09G262200 Glycine max HOM05D006065 ORTHO05D007672 5.4e-17 91.7 128 46.9
HanXRQChr13g0426531 Helianthus annuus HOM05D006065 ORTHO05D007672 7.1e-17 91.3 146 41.1
VMungo1383G0981 Vigna mungo HOM05D006065 ORTHO05D007672 9.2e-17 90.9 128 44.5
THA.LOC104817023 Tarenaya hassleriana HOM05D006065 ORTHO05D007672 1.2e-16 90.5 127 41.7
Ca_07890_v3 Cicer arietinum L. HOM05D006065 ORTHO05D007672 3.5e-16 89.0 135 42.2
Aa31LG5G450 Aethionema arabicum HOM05D006065 ORTHO05D007672 6.0e-16 88.2 132 39.4
Aqoxy7G00322 Aquilegia oxysepala HOM05D006065 ORTHO05D007672 6.0e-16 88.2 124 41.9
arahy.Tifrunner.gnm1.ann1.QD83TI Arachis hypogaea HOM05D006065 ORTHO05D007672 6.0e-16 88.2 132 44.7
Phvul.008G067900 Phaseolus vulgaris HOM05D006065 ORTHO05D007672 6.0e-16 88.2 129 43.4
Manes.01G258100 Manihot esculenta HOM05D006065 ORTHO05D007672 1.3e-15 87.0 149 40.9
TPR.G37820 Trifolium pratense HOM05D006065 ORTHO05D007672 1.7e-15 86.7 132 40.2
EL10Ac1g00426 Beta vulgaris HOM05D006065 ORTHO05D007672 2.3e-15 86.3 110 48.2
GSVIVG01026900001 Vitis vinifera HOM05D006065 ORTHO05D007672 2.3e-15 86.3 116 43.1
Rhsim07G0016100 Rhododendron simsii HOM05D006065 ORTHO05D007672 3.0e-15 85.9 210 33.8
CiPaw.02G030100 Carya illinoinensis HOM05D006065 ORTHO05D007672 3.9e-15 85.5 119 43.7
MBI18_g21561_MAGBIO Magnolia biondii HOM05D006065 ORTHO05D007672 8.6e-15 84.3 160 37.5
Sabra02G0126300 Salix brachista HOM05D006065 ORTHO05D007672 1.1e-14 84.0 127 44.9
Gohir.A11G088300 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.5e-14 83.6 129 41.1
Gohir.D11G092600 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.5e-14 83.6 129 41.1
Sed0021596 Sechium edule HOM05D006065 ORTHO05D007672 2.5e-14 82.8 131 44.3
Lalb_Chr19g0127061 Lupinus albus HOM05D006065 ORTHO05D007672 3.3e-14 82.4 130 40.0
SGA_v2.0_scaffold43G16421 Striga asiatica HOM05D006065 ORTHO05D007672 3.3e-14 82.4 138 39.1
TWI14G0791 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 3.3e-14 82.4 131 38.9
Sp6g00560 Schrenkiella parvula HOM05D006065 ORTHO05D007672 7.3e-14 81.3 127 38.6
PGR031G0376 Punica granatum HOM05D006065 ORTHO05D007672 3.6e-13 79.0 145 37.9
Ah.05g180670 Amaranthus hybridus HOM05D006065 ORTHO05D007672 4.7e-13 78.6 127 40.2
AT4G00525 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 6.2e-13 78.2 146 37.7
Oeu020560.2 Olea europaea HOM05D006065 ORTHO05D007672 1.1e-12 77.4 204 31.4
Carub.0006s3674 Capsella rubella HOM05D006065 ORTHO05D007672 1.4e-12 77.0 126 38.1
arahy.Tifrunner.gnm1.ann1.WJC6IK Arachis hypogaea HOM05D006065 ORTHO05D007672 1.8e-12 76.6 162 36.4
PSO210G7571 Papaver somniferum HOM05D006065 ORTHO05D007672 6.8e-12 74.7 142 35.2
Psat3g110920 Pisum sativum HOM05D006065 ORTHO05D007672 2.6e-11 72.8 133 39.1
Thhalv10029047m.g Eutrema salsugineum HOM05D006065 ORTHO05D007672 4.4e-11 72.0 126 32.5
PSO832G3783 Papaver somniferum HOM05D006065 ORTHO05D007672 4.4e-11 72.0 142 33.1
BcaC01g06870 Brassica carinata HOM05D006065 ORTHO05D007672 8.4e-10 67.8 130 35.4
BcaNung05355 Brassica carinata HOM05D006065 ORTHO05D007672 8.4e-10 67.8 130 35.4
BolC3t16187H Brassica oleracea HOM05D006065 ORTHO05D007672 8.4e-10 67.8 130 35.4
BraA03t12384Z Brassica rapa HOM05D006065 ORTHO05D007672 3.2e-09 65.9 143 35.0
A03p32140 Brassica napus HOM05D006065 ORTHO05D007672 5.4e-09 65.1 143 35.0
MD07G1138600 Malus domestica HOM05D006065 ORTHO05D007672 7.1e-09 64.7 112 38.4
HPP92_008504 Vanilla planifolia HOM05D006065 ORTHO05D007672 9.2e-09 64.3 135 31.9
CDE06G0574 Ceratophyllum demersum HOM05D006065 ORTHO05D007672 3.9e-07 58.9 120 35.0
Nn1g01520 Nelumbo nucifera HOM05D006065 ORTHO05D007672 6.6e-07 58.2 126 38.1
AL6G52950 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 8.6e-07 57.8 127 32.3
AL1G10640 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 3.3e-06 55.8 144 33.3
Eucgr.D02286 Eucalyptus grandis HOM05D006065 ORTHO05D007672 3.3e-06 55.8 114 33.3
AT1G01715 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 5.6e-06 55.1 148 31.1
CSS0003041 Camellia sinensis var. sinensis HOM05D006065 ORTHO05D007672 9.6e-06 54.3 183 31.1
SEGI_06767 Sequoiadendron giganteum HOM05D006065 ORTHO05D007672 9.6e-06 54.3 119 31.9


User provided reference genes

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