Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 0.0e+00 1312.0 643 100.0
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 0.0e+00 1274.2 671 94.5
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 0.0e+00 1259.6 643 95.8
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 0.0e+00 1201.0 643 91.1
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 0.0e+00 1186.4 643 89.4
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 0.0e+00 1184.9 643 89.0
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 0.0e+00 1156.0 665 85.9
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 2.3e-266 922.2 638 71.5
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 9.5e-265 916.8 657 69.4
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 1.2e-264 916.4 649 69.3
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 2.1e-264 915.6 634 69.6
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 1.8e-263 912.5 643 69.2
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 7.8e-259 897.1 641 68.8
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 1.9e-257 892.5 644 68.6
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 4.4e-254 881.3 634 67.4
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 9.8e-254 880.2 652 67.2
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 2.2e-253 879.0 637 67.8
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 3.7e-253 878.2 660 66.5
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 3.7e-253 878.2 660 66.5
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 8.3e-253 877.1 644 66.5
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 4.1e-252 874.8 642 67.9
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 1.3e-250 869.8 637 67.7
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 2.3e-250 869.0 638 66.3
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 1.1e-249 866.7 650 66.5
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 5.6e-249 864.4 645 67.0
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 3.6e-248 861.7 637 66.9
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 3.6e-248 861.7 636 65.9
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 1.8e-247 859.4 642 67.0
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 4.0e-247 858.2 644 65.2
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 5.2e-247 857.8 636 65.9
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 5.2e-247 857.8 631 67.5
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 3.4e-246 855.1 636 65.4
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 5.8e-246 854.4 647 65.5
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 5.4e-244 847.8 643 65.2
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 7.1e-244 847.4 635 66.6
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 4.6e-243 844.7 651 64.4
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 3.0e-242 842.0 639 65.1
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 3.0e-242 842.0 663 63.0
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 5.1e-242 841.3 637 65.1
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 1.5e-241 839.7 650 64.5
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 1.9e-241 839.3 641 65.5
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 1.9e-241 839.3 644 64.1
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 5.6e-241 837.8 674 61.9
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 5.6e-241 837.8 648 63.6
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 1.2e-240 836.6 633 66.2
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 6.2e-240 834.3 650 63.2
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 2.0e-238 829.3 656 63.1
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 7.6e-238 827.4 656 63.0
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 9.9e-238 827.0 644 65.2
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 1.3e-237 826.6 663 62.3
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 2.9e-237 825.5 640 65.3
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 4.9e-237 824.7 635 65.0
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 8.4e-237 823.9 642 64.6
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 1.4e-236 823.2 644 64.9
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 1.2e-235 820.1 606 65.8
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 5.1e-234 814.7 643 62.5
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 5.6e-233 811.2 645 61.9
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 1.3e-232 810.1 697 61.0
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 1.8e-231 806.2 645 64.8
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 5.3e-231 804.7 645 62.8
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 4.4e-230 801.6 640 63.1
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 7.6e-230 800.8 645 64.3
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 9.9e-230 800.4 663 61.4
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 9.3e-228 793.9 638 63.0
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 2.1e-227 792.7 639 60.9
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 6.0e-227 791.2 636 62.1
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 3.9e-226 788.5 635 62.2
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 3.9e-226 788.5 639 62.1
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 2.5e-225 785.8 641 61.2
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 4.3e-225 785.0 633 61.9
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 3.6e-224 781.9 633 62.2
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 8.1e-224 780.8 651 61.0
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 3.1e-223 778.9 651 60.8
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 3.4e-222 775.4 656 59.1
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 5.8e-222 774.6 631 61.5
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 6.4e-221 771.2 641 60.8
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 6.4e-221 771.2 653 60.8
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 1.4e-220 770.0 649 61.9
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 1.9e-220 769.6 633 61.5
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 1.6e-219 766.5 644 59.5
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 6.0e-219 764.6 641 60.1
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 3.9e-218 761.9 643 61.3
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 4.8e-216 755.0 606 62.2
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 3.4e-214 748.8 592 63.0
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 7.4e-209 731.1 645 58.6
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 1.8e-207 726.5 636 57.1
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 3.0e-202 709.1 490 71.4
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 1.4e-196 690.3 645 55.3
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 3.2e-196 689.1 533 64.0
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 2.6e-190 669.5 454 70.5
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 3.6e-179 632.5 622 52.3
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 4.0e-178 629.0 631 52.8
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 4.1e-175 619.0 639 50.9
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 1.8e-154 550.4 504 55.8
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 5.9e-150 535.4 593 48.9
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 3.9e-149 532.7 427 62.1
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 5.8e-145 518.8 358 69.0
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 1.1e-130 471.5 336 68.2
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 1.8e-130 470.7 330 68.2
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 6.0e-126 455.7 467 50.3
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 2.8e-99 367.1 412 50.5
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 1.8e-74 284.6 267 55.4
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 7.0e-66 256.1 201 64.2
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 2.9e-64 250.8 175 65.7
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 2.5e-63 247.7 191 61.3
Ca_23662_v3 Cicer arietinum L. HOM05D006991 ORTHO05D028457 5.9e-49 199.9 157 63.1
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 2.9e-48 197.6 163 57.7
CAN.G1527.6 Capsicum annuum HOM05D006991 ORTHO05D028457 3.2e-47 194.1 119 81.5
AUR62033321 Chenopodium quinoa HOM05D006991 ORTHO05D028457 3.2e-47 194.1 129 68.2
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 1.4e-45 188.7 122 73.0
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 6.8e-45 186.4 191 52.4
PSO782G3099 Papaver somniferum HOM05D006991 ORTHO05D028457 2.9e-35 154.5 185 45.9
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 8.6e-32 142.9 111 62.2
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 7.3e-31 139.8 74 83.8
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 5.4e-26 123.6 64 85.9
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 4.0e-21 107.5 82 62.2


User provided reference genes

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