Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 9.3e-184 646.7 325 100.0
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 5.3e-179 630.9 325 97.5
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 3.2e-176 621.7 325 96.0
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 4.9e-169 597.8 325 92.3
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 2.1e-167 592.4 325 91.1
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 3.4e-162 575.1 324 87.3
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 7.6e-162 573.9 378 78.3
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 2.5e-141 505.8 319 78.1
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 2.8e-140 502.3 326 75.8
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 8.2e-140 500.7 326 75.5
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 3.4e-138 495.4 322 75.2
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 2.9e-137 492.3 320 75.6
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 1.4e-136 490.0 319 76.5
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 2.5e-136 489.2 328 73.8
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 9.4e-136 487.3 322 73.3
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 1.0e-134 483.8 319 75.2
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 5.1e-134 481.5 321 73.8
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 2.0e-133 479.6 316 74.4
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 8.2e-132 474.2 317 71.6
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 2.6e-130 469.2 319 70.5
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 7.7e-130 467.6 321 72.9
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 1.7e-129 466.5 317 71.9
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 2.2e-129 466.1 320 73.1
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 2.9e-129 465.7 321 73.2
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 3.8e-129 465.3 320 73.1
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 3.8e-129 465.3 329 69.9
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 5.0e-129 464.9 325 70.5
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 6.5e-129 464.5 316 71.5
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 8.5e-129 464.2 322 70.8
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 1.1e-128 463.8 325 70.8
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.9e-128 463.0 317 71.6
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.9e-128 463.0 320 73.1
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 1.9e-128 463.0 325 69.5
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.5e-128 462.6 317 71.3
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 3.2e-128 462.2 320 71.2
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 4.2e-128 461.8 321 70.4
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 5.5e-128 461.5 317 71.3
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 7.2e-128 461.1 319 71.5
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 9.4e-128 460.7 317 71.6
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 9.4e-128 460.7 317 71.3
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 1.2e-127 460.3 323 71.2
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 1.6e-127 459.9 319 71.5
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 2.1e-127 459.5 351 66.7
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 4.7e-127 458.4 314 72.6
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 6.1e-127 458.0 322 70.2
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 2.3e-126 456.1 322 70.8
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 2.3e-126 456.1 319 71.2
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 4.0e-126 455.3 316 69.6
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 4.0e-126 455.3 319 70.5
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 4.0e-126 455.3 322 70.8
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 5.2e-126 454.9 317 71.0
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 1.5e-125 453.4 322 68.6
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 2.0e-125 453.0 316 70.3
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 2.6e-125 452.6 319 70.5
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 7.5e-125 451.1 319 69.9
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 9.7e-125 450.7 316 70.6
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 2.8e-124 449.1 323 70.0
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 3.7e-124 448.7 318 70.8
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 4.8e-124 448.4 316 70.6
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 1.8e-123 446.4 323 70.0
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 5.3e-123 444.9 321 69.5
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 2.7e-122 442.6 314 70.1
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 7.7e-122 441.0 308 71.4
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 2.9e-121 439.1 319 66.8
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 5.0e-121 438.3 317 67.8
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 8.5e-121 437.6 314 67.8
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 8.5e-121 437.6 315 68.6
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 2.5e-120 436.0 291 74.2
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 3.2e-120 435.6 320 70.3
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 9.4e-120 434.1 318 67.9
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 2.1e-119 433.0 322 68.6
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 2.7e-119 432.6 316 66.5
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 3.6e-119 432.2 316 66.8
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 1.0e-118 430.6 320 66.2
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 1.4e-118 430.3 319 65.8
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 4.0e-118 428.7 315 65.7
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 6.8e-118 427.9 335 64.8
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 1.3e-116 423.7 322 68.0
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 1.3e-116 423.7 320 64.7
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 1.3e-116 423.7 319 64.6
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 3.7e-116 422.2 319 64.3
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 1.4e-115 420.2 321 66.4
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 1.4e-115 420.2 345 61.7
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 1.4e-115 420.2 316 66.1
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 1.8e-115 419.9 321 66.0
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 1.8e-115 419.9 321 66.4
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 2.4e-115 419.5 316 65.5
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 1.2e-114 417.2 321 65.4
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 2.9e-113 412.5 317 64.7
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 8.5e-113 411.0 313 64.5
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 1.1e-112 410.6 318 63.5
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.5e-112 410.2 280 72.5
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 5.5e-112 408.3 333 63.1
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 1.8e-107 393.3 281 68.7
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 1.8e-107 393.3 261 73.6
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 5.4e-107 391.7 320 61.2
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 7.7e-106 387.9 299 64.2
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 8.0e-103 377.9 271 69.0
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 4.4e-101 372.1 245 73.9
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 2.0e-98 363.2 242 75.2
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 1.4e-94 350.5 318 54.7
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 8.9e-94 347.8 239 71.1
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 1.2e-93 347.4 311 57.2
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 4.4e-93 345.5 234 73.9
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 3.7e-92 342.4 234 70.9
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 4.9e-92 342.0 203 81.8
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 2.1e-87 326.6 246 66.3
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-85 320.9 239 68.6
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 1.0e-81 307.8 234 66.2
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 7.3e-80 301.6 314 51.0
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 2.4e-75 286.6 242 64.5
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 9.2e-75 284.6 239 63.2
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 1.1e-72 277.7 192 68.8
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 1.9e-72 276.9 305 48.2
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.6e-63 247.3 193 64.2
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 6.7e-57 225.3 182 62.6
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 1.9e-51 207.2 117 91.5
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 9.3e-51 204.9 131 77.1
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 3.5e-50 203.0 318 41.2
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 8.1e-47 191.8 321 39.3
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 4.5e-37 159.5 321 36.8
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 5.0e-36 156.0 112 67.9
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 5.0e-36 156.0 112 67.9
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 5.0e-36 156.0 112 67.9
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 7.2e-35 152.1 105 72.4
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.6e-34 151.0 108 70.4
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 2.1e-34 150.6 125 56.0
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 7.4e-32 142.1 127 54.3
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 4.5e-29 132.9 82 75.6
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 3.8e-28 129.8 90 68.9
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 2.1e-26 124.0 80 78.8
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 6.3e-23 112.5 82 70.7
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-18 98.2 77 57.1
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 2.6e-16 90.5 85 52.9
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 1.3e-15 88.2 54 72.2
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 1.3e-12 78.2 62 61.3
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 1.3e-12 78.2 62 61.3
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 2.2e-12 77.4 57 61.4
arahy.Tifrunner.gnm1.ann1.G2MMRU Arachis hypogaea HOM05D005332 ORTHO05D006861 1.3e-07 61.6 40 77.5
arahy.Tifrunner.gnm1.ann1.SQV5XE Arachis hypogaea HOM05D005332 ORTHO05D004201 9.1e-06 55.5 47 61.7


User provided reference genes

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