Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g037730 Solanum pennellii HOM05D003518 ORTHO05D005164 3.0e-93 345.1 168 100.0
Solyc01g091950.4 Solanum lycopersicum HOM05D003518 ORTHO05D005164 3.3e-92 341.7 168 98.8
CAN.G170.67 Capsicum annuum HOM05D003518 ORTHO05D005164 2.1e-78 295.8 168 86.9
Peaxi162Scf00021g00116 Petunia axillaris HOM05D003518 ORTHO05D005164 4.1e-66 255.0 150 84.7
Nitab4.5_0003182g0050 Nicotiana tabacum HOM05D003518 ORTHO05D005164 2.5e-63 245.7 168 74.4
Nitab4.5_0001127g0040 Nicotiana tabacum HOM05D003518 ORTHO05D005164 5.1e-61 238.0 144 82.6
GSVIVG01027580001 Vitis vinifera HOM05D003518 ORTHO05D005164 4.1e-58 228.4 162 68.5
Oeu024431.2 Olea europaea HOM05D003518 ORTHO05D005164 1.2e-57 226.9 159 67.3
Dinv32408 Davidia involucrata HOM05D003518 ORTHO05D005164 5.9e-57 224.6 164 66.5
Dinv43741 Davidia involucrata HOM05D003518 ORTHO05D005164 1.7e-56 223.0 164 64.6
Hma1.2p1_0132F.1_g060640 Hydrangea macrophylla HOM05D003518 ORTHO05D005164 1.1e-55 220.3 164 64.0
Actinidia33452 Actinidia chinensis HOM05D003518 ORTHO05D005164 3.2e-55 218.8 159 67.9
Rhsim07G0023000 Rhododendron simsii HOM05D003518 ORTHO05D005164 4.2e-55 218.4 168 64.3
Migut.B01669 Erythranthe guttata HOM05D003518 ORTHO05D005164 7.2e-55 217.6 162 63.0
Potri.002G151800 Populus trichocarpa HOM05D003518 ORTHO05D005164 1.6e-54 216.5 164 62.8
MSTRG.20781 Avicennia marina HOM05D003518 ORTHO05D005164 2.7e-54 215.7 164 62.8
Duzib133G1143 Durio zibethinus HOM05D003518 ORTHO05D005164 2.7e-54 215.7 164 63.4
vmacro20980 Vaccinium macrocarpon HOM05D003518 ORTHO05D005164 7.9e-54 214.2 164 62.8
Cc02_g37010 Coffea canephora HOM05D003518 ORTHO05D005164 3.9e-53 211.8 164 64.0
SalBow7G3081 Salvia bowleyana HOM05D003518 ORTHO05D005164 5.1e-53 211.5 164 61.0
Manes.01G263400 Manihot esculenta HOM05D003518 ORTHO05D005164 8.8e-53 210.7 164 60.4
QL08p051054 Quercus lobata HOM05D003518 ORTHO05D005164 8.8e-53 210.7 167 63.5
CiPaw.01G258000 Carya illinoinensis HOM05D003518 ORTHO05D005164 1.5e-52 209.9 164 63.4
CiPaw.02G164700 Carya illinoinensis HOM05D003518 ORTHO05D005164 1.5e-52 209.9 164 63.4
Potri.014G074300 Populus trichocarpa HOM05D003518 ORTHO05D005164 2.5e-52 209.1 164 57.9
MD02G1197300 Malus domestica HOM05D003518 ORTHO05D005164 5.7e-52 208.0 164 59.8
SGA_v2.0_scaffold153G37052 Striga asiatica HOM05D003518 ORTHO05D005164 7.4e-52 207.6 167 59.9
TWI14G0835 Tripterygium wilfordii HOM05D003518 ORTHO05D005164 2.8e-51 205.7 162 61.1
FAN10G3707 Fragaria x ananassa HOM05D003518 ORTHO05D005164 4.8e-51 204.9 164 59.8
FvH4_7g12710 Fragaria vesca HOM05D003518 ORTHO05D005164 6.3e-51 204.5 164 59.8
FAN01G1761 Fragaria x ananassa HOM05D003518 ORTHO05D005164 6.3e-51 204.5 164 59.8
FAN06G1131 Fragaria x ananassa HOM05D003518 ORTHO05D005164 6.3e-51 204.5 164 59.8
FAN06G5121 Fragaria x ananassa HOM05D003518 ORTHO05D005164 6.3e-51 204.5 164 59.8
Rhsim01G0160000 Rhododendron simsii HOM05D003518 ORTHO05D005164 1.4e-50 203.4 164 60.4
Gohir.A12G102800 Gossypium hirsutum HOM05D003518 ORTHO05D005164 1.8e-50 203.0 164 60.4
RcHm_v2.0_Chr1g0351731 Rosa chinensis HOM05D003518 ORTHO05D005164 1.8e-50 203.0 164 61.6
CANSAT56G2265 Cannabis sativa HOM05D003518 ORTHO05D005164 2.4e-50 202.6 164 59.8
Gohir.D11G088000 Gossypium hirsutum HOM05D003518 ORTHO05D005164 2.4e-50 202.6 164 61.0
Gorai.007G093900 Gossypium raimondii HOM05D003518 ORTHO05D005164 2.4e-50 202.6 164 61.0
FAN03G3110 Fragaria x ananassa HOM05D003518 ORTHO05D005164 4.1e-50 201.8 164 61.0
Eucgr.E01329 Eucalyptus grandis HOM05D003518 ORTHO05D005164 6.9e-50 201.1 161 61.5
FAN10G3827 Fragaria x ananassa HOM05D003518 ORTHO05D005164 1.5e-49 199.9 164 58.5
MD07G1123700 Malus domestica HOM05D003518 ORTHO05D005164 1.5e-49 199.9 164 56.7
Manes.05G041800 Manihot esculenta HOM05D003518 ORTHO05D005164 2.6e-49 199.1 162 58.0
Atru.chr5.372 Acer truncatum HOM05D003518 ORTHO05D005164 3.4e-49 198.7 164 59.1
A04p33950 Brassica napus HOM05D003518 ORTHO05D005164 3.4e-49 198.7 159 61.0
BraA04t18856Z Brassica rapa HOM05D003518 ORTHO05D005164 3.4e-49 198.7 159 61.0
TWI59G1247 Tripterygium wilfordii HOM05D003518 ORTHO05D005164 3.4e-49 198.7 162 59.9
Gorai.008G115300 Gossypium raimondii HOM05D003518 ORTHO05D005164 4.5e-49 198.4 164 59.8
Duzib138G0903 Durio zibethinus HOM05D003518 ORTHO05D005164 5.9e-49 198.0 158 62.7
THA.LOC104802006 Tarenaya hassleriana HOM05D003518 ORTHO05D005164 5.9e-49 198.0 163 59.5
Prupe.2G151300 Prunus persica HOM05D003518 ORTHO05D005164 7.7e-49 197.6 166 60.2
DCAR_006891 Daucus carota HOM05D003518 ORTHO05D005164 1.7e-48 196.4 165 57.6
Haze_16711 Corylus avellana HOM05D003518 ORTHO05D005164 3.8e-48 195.3 164 62.8
DCAR_015924 Daucus carota HOM05D003518 ORTHO05D005164 6.5e-48 194.5 163 56.4
arahy.Tifrunner.gnm1.ann1.4HY23M Arachis hypogaea HOM05D003518 ORTHO05D005164 8.5e-48 194.1 159 58.5
Ca_23782_v3 Cicer arietinum L. HOM05D003518 ORTHO05D005164 8.5e-48 194.1 159 59.7
ECA234G2542 Erigeron canadensis HOM05D003518 ORTHO05D005164 4.2e-47 191.8 164 60.4
Glyma.03G019200 Glycine max HOM05D003518 ORTHO05D005164 4.2e-47 191.8 158 58.9
Aqoxy7G00493 Aquilegia oxysepala HOM05D003518 ORTHO05D005164 5.5e-47 191.4 164 57.3
Lsat_1_v5_gn_4_37220 Lactuca sativa HOM05D003518 ORTHO05D005164 5.5e-47 191.4 159 62.3
Sc23g0003400 Simmondsia chinensis HOM05D003518 ORTHO05D005164 5.5e-47 191.4 161 54.7
Ah.05g175810 Amaranthus hybridus HOM05D003518 ORTHO05D005164 9.4e-47 190.7 156 53.8
Sp4g27710 Schrenkiella parvula HOM05D003518 ORTHO05D005164 9.4e-47 190.7 159 57.2
arahy.Tifrunner.gnm1.ann1.N1W82K Arachis hypogaea HOM05D003518 ORTHO05D005164 1.2e-46 190.3 159 57.2
Ciclev10019439m.g Citrus clementina HOM05D003518 ORTHO05D005164 1.2e-46 190.3 162 59.3
MBI11_g05096_MAGBIO Magnolia biondii HOM05D003518 ORTHO05D005164 1.2e-46 190.3 158 55.1
Phvul.010G088200 Phaseolus vulgaris HOM05D003518 ORTHO05D005164 1.6e-46 189.9 159 58.5
Sabra14G0053000 Salix brachista HOM05D003518 ORTHO05D005164 1.6e-46 189.9 185 50.8
BcaC02g07077 Brassica carinata HOM05D003518 ORTHO05D005164 2.1e-46 189.5 159 58.5
C04p71760 Brassica napus HOM05D003518 ORTHO05D005164 2.1e-46 189.5 159 58.5
Carub.0004s2832 Capsella rubella HOM05D003518 ORTHO05D005164 2.1e-46 189.5 158 58.2
AUR62033382 Chenopodium quinoa HOM05D003518 ORTHO05D005164 3.6e-46 188.7 162 53.1
Lsat_1_v5_gn_7_6740 Lactuca sativa HOM05D003518 ORTHO05D005164 3.6e-46 188.7 158 63.3
Lj3g0010840 Lotus japonicus HOM05D003518 ORTHO05D005164 3.6e-46 188.7 159 57.9
CARHR140890 Cardamine hirsuta HOM05D003518 ORTHO05D005164 4.7e-46 188.3 158 58.2
A03p25290 Brassica napus HOM05D003518 ORTHO05D005164 6.1e-46 188.0 159 57.9
BcaB06g29432 Brassica carinata HOM05D003518 ORTHO05D005164 7.9e-46 187.6 159 57.9
EL10Ac1g00954 Beta vulgaris HOM05D003518 ORTHO05D005164 1.0e-45 187.2 157 56.7
AUR62004275 Chenopodium quinoa HOM05D003518 ORTHO05D005164 1.0e-45 187.2 156 55.1
VMungo0331G0661 Vigna mungo HOM05D003518 ORTHO05D005164 1.4e-45 186.8 155 58.1
Lalb_Chr17g0340051 Lupinus albus HOM05D003518 ORTHO05D005164 1.8e-45 186.4 159 58.5
Nn6g34312 Nelumbo nucifera HOM05D003518 ORTHO05D005164 1.8e-45 186.4 164 53.0
BraA03t11733Z Brassica rapa HOM05D003518 ORTHO05D005164 3.0e-45 185.7 159 56.6
Thhalv10001388m.g Eutrema salsugineum HOM05D003518 ORTHO05D005164 3.0e-45 185.7 162 56.2
Medtr8g033180 Medicago truncatula HOM05D003518 ORTHO05D005164 3.0e-45 185.7 159 57.2
AL4G44840 Arabidopsis lyrata HOM05D003518 ORTHO05D005164 3.9e-45 185.3 159 56.6
BcaB01g03262 Brassica carinata HOM05D003518 ORTHO05D005164 3.9e-45 185.3 158 55.7
C03p30180 Brassica napus HOM05D003518 ORTHO05D005164 3.9e-45 185.3 159 56.6
Glyma.07G080800 Glycine max HOM05D003518 ORTHO05D005164 3.9e-45 185.3 159 57.2
BcaC01g05115 Brassica carinata HOM05D003518 ORTHO05D005164 5.1e-45 184.9 159 56.6
HanXRQChr16g0523541 Helianthus annuus HOM05D003518 ORTHO05D005164 5.1e-45 184.9 158 61.4
Aa31LG1G27140 Aethionema arabicum HOM05D003518 ORTHO05D005164 6.7e-45 184.5 151 58.9
HanXRQChr06g0169291 Helianthus annuus HOM05D003518 ORTHO05D005164 6.7e-45 184.5 158 60.1
BolC4t28675H Brassica oleracea HOM05D003518 ORTHO05D005164 8.8e-45 184.1 159 57.2
BolC3t15366H Brassica oleracea HOM05D003518 ORTHO05D005164 4.4e-44 181.8 159 56.0
PSO782G5439 Papaver somniferum HOM05D003518 ORTHO05D005164 7.4e-44 181.0 158 55.1
HanXRQChr04g0122151 Helianthus annuus HOM05D003518 ORTHO05D005164 9.7e-44 180.6 158 60.1
Lalb_Chr04g0256591 Lupinus albus HOM05D003518 ORTHO05D005164 9.7e-44 180.6 166 54.8
PSO478G4904 Papaver somniferum HOM05D003518 ORTHO05D005164 1.7e-43 179.9 158 55.1
PGR042G3961 Punica granatum HOM05D003518 ORTHO05D005164 4.8e-43 178.3 156 54.5
Sabra02G0120000 Salix brachista HOM05D003518 ORTHO05D005164 6.3e-43 177.9 242 40.9
Nn1g01294 Nelumbo nucifera HOM05D003518 ORTHO05D005164 1.8e-42 176.4 150 56.7
arahy.Tifrunner.gnm1.ann1.UCSC4W Arachis hypogaea HOM05D003518 ORTHO05D005164 5.9e-41 171.4 166 53.0
ECA236G3950 Erigeron canadensis HOM05D003518 ORTHO05D005164 7.7e-41 171.0 158 58.9
TAR614G0002 Trochodendron aralioides HOM05D003518 ORTHO05D005164 1.3e-40 170.2 136 59.6
arahy.Tifrunner.gnm1.ann1.I486B7 Arachis hypogaea HOM05D003518 ORTHO05D005164 1.7e-40 169.9 166 52.4
COL.COLO4_12652 Corchorus olitorius HOM05D003518 ORTHO05D005164 1.7e-40 169.9 124 65.3
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 3.8e-40 168.7 158 55.7
ClCG05G001980 Citrullus lanatus HOM05D003518 ORTHO05D005164 1.1e-39 167.2 165 50.9
Thecc.01G371200 Theobroma cacao HOM05D003518 ORTHO05D005164 1.1e-39 167.2 123 65.9
TAR636G1560 Trochodendron aralioides HOM05D003518 ORTHO05D005164 4.2e-39 165.2 139 56.1
Hund16973 Selenicereus undatus HOM05D003518 ORTHO05D005164 5.5e-39 164.9 154 47.4
Sed0008201 Sechium edule HOM05D003518 ORTHO05D005164 1.6e-38 163.3 153 52.9
MELO3C006158.2 Cucumis melo HOM05D003518 ORTHO05D005164 6.1e-38 161.4 165 49.1
Hund27333 Selenicereus undatus HOM05D003518 ORTHO05D005164 1.8e-37 159.8 152 50.7
CsaV3_3G009390 Cucumis sativus L. HOM05D003518 ORTHO05D005164 6.7e-37 157.9 165 48.5
Cpa.g.sc18.167 Carica papaya HOM05D003518 ORTHO05D005164 2.0e-36 156.4 135 54.8
Gohir.A11G083800 Gossypium hirsutum HOM05D003518 ORTHO05D005164 2.2e-35 152.9 122 63.1
Sed0024132 Sechium edule HOM05D003518 ORTHO05D005164 2.2e-35 152.9 154 50.6
Psat4g198920 Pisum sativum HOM05D003518 ORTHO05D005164 4.5e-33 145.2 132 55.3
Zm00001eb272520 Zea mays HOM05D003518 ORTHO05D005164 5.5e-31 138.3 161 43.5
SEGI_40964 Sequoiadendron giganteum HOM05D003518 ORTHO05D005164 4.7e-30 135.2 157 47.1
CSS0048282 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 4.4e-28 128.6 130 50.0
Sc02g0002290 Simmondsia chinensis HOM05D003518 ORTHO05D005164 1.0e-24 117.5 116 50.9
CSS0010985 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 3.8e-24 115.5 131 47.3
Os06g0712300 Oryza sativa ssp. japonica HOM05D003518 ORTHO05D005164 1.5e-23 113.6 159 39.0
Psat3g059680 Pisum sativum HOM05D003518 ORTHO05D022796 3.2e-23 112.5 108 51.9
Actinidia27231 Actinidia chinensis HOM05D003518 ORTHO05D026429 9.4e-23 110.9 82 63.4
CSS0016703 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 3.6e-22 109.0 131 46.6
CBR_g53493 Chara braunii HOM05D003518 ORTHO05D000301 9.8e-20 100.9 150 35.3
Oeu059219.1 Olea europaea HOM05D003518 ORTHO05D005164 4.9e-19 98.6 66 68.2
Pp3c13_11520 Physcomitrium patens HOM05D003518 ORTHO05D005164 6.3e-19 98.2 165 32.7
Mapoly0076s0022 Marchantia polymorpha HOM05D003518 ORTHO05D005164 1.1e-18 97.4 154 34.4
HPP92_012965 Vanilla planifolia HOM05D003518 ORTHO05D015542 3.1e-18 95.9 89 50.6
Gohir.D11G289400 Gossypium hirsutum HOM05D003518 ORTHO05D022796 9.2e-18 94.4 92 53.3
Gorai.007G312900 Gossypium raimondii HOM05D003518 ORTHO05D022796 9.2e-18 94.4 92 53.3
Zm00001eb227780 Zea mays HOM05D003518 ORTHO05D005164 1.2e-17 94.0 130 40.0
Mapoly0012s0208 Marchantia polymorpha HOM05D003518 ORTHO05D005164 3.8e-16 89.0 157 29.9
Pp3c11_9750 Physcomitrium patens HOM05D003518 ORTHO05D005164 4.3e-15 85.5 160 30.6
Pp3c7_19140 Physcomitrium patens HOM05D003518 ORTHO05D005164 4.0e-13 79.0 143 30.1
CDE06G2129 Ceratophyllum demersum HOM05D003518 ORTHO05D015542 1.2e-12 77.4 84 42.9
Oeu058604.1 Olea europaea HOM05D003518 ORTHO05D005164 2.0e-12 76.6 60 56.7
CSS0039859 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 2.6e-12 76.3 59 57.6
Pp3c5_19320 Physcomitrium patens HOM05D003518 ORTHO05D005164 3.2e-10 69.3 144 28.5
CSS0037508 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 5.4e-10 68.6 59 52.5
CSS0043694 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 5.4e-10 68.6 59 52.5
CSS0002907 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D026429 2.7e-09 66.2 55 56.4
CSS0046424 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D026429 2.7e-09 66.2 55 56.4
Lj9C575T5 Lonicera japonica HOM05D003518 ORTHO05D005164 5.9e-09 65.1 72 52.8
MBI18_g11115_MAGBIO Magnolia biondii HOM05D003518 ORTHO05D015542 1.3e-08 63.9 81 42.0
AagrBONN_evm.TU.Sc2ySwM_117.674 Anthoceros agrestis HOM05D003518 ORTHO05D005164 5.0e-08 62.0 122 32.8
Gohir.D11G292150 Gossypium hirsutum HOM05D003518 ORTHO05D022796 1.1e-07 60.8 44 61.4
Gohir.D11G292950 Gossypium hirsutum HOM05D003518 ORTHO05D022796 1.1e-07 60.8 44 61.4
Gorai.007G316400 Gossypium raimondii HOM05D003518 ORTHO05D022796 1.1e-07 60.8 44 61.4
MBI18_g40306_MAGBIO Magnolia biondii HOM05D003518 ORTHO05D015542 1.9e-07 60.1 57 45.6
CSS0046664 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D026429 4.3e-07 58.9 56 50.0
Manes.08G092800 Manihot esculenta HOM05D000059 ORTHO05D000528 1.2e-06 57.4 143 29.4
MBI16_g42579_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 1.6e-06 57.0 51 41.2
Gohir.D12G106000 Gossypium hirsutum HOM05D003518 ORTHO05D005164 2.8e-06 56.2 38 68.4
CDE04G1942 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 4.7e-06 55.5 46 52.2
CDE08G1447 Ceratophyllum demersum HOM05D000469 ORTHO05D000323 8.0e-06 54.7 99 32.3


User provided reference genes

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