Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 1.4e-179 632.9 321 100.0
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 3.8e-174 614.8 321 97.2
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 6.8e-171 604.0 321 96.3
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 1.3e-158 563.1 321 90.0
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 9.9e-154 547.0 321 88.2
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.0e-150 535.4 321 85.7
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 1.2e-111 407.1 323 67.2
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 2.3e-110 402.9 323 64.1
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 1.9e-109 399.8 321 63.6
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 2.2e-108 396.4 323 64.1
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.7e-108 395.6 324 69.8
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 8.2e-108 394.4 323 64.4
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.1e-107 394.0 322 60.2
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 2.4e-107 392.9 323 63.5
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 3.1e-107 392.5 322 62.1
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 3.4e-106 389.0 323 61.0
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 2.2e-105 386.3 323 62.5
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 2.9e-105 386.0 321 61.1
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 6.5e-105 384.8 319 63.0
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 6.5e-105 384.8 324 60.5
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.1e-104 384.0 322 64.6
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.4e-104 383.6 326 65.0
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 9.4e-104 380.9 323 60.1
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 1.6e-103 380.2 321 59.5
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 2.1e-103 379.8 323 60.1
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 2.1e-103 379.8 322 59.9
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 1.8e-102 376.7 322 59.9
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 5.1e-102 375.2 325 59.7
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 5.1e-102 375.2 323 61.6
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 6.7e-102 374.8 334 58.1
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.1e-101 374.0 321 58.9
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 3.3e-101 372.5 322 59.0
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 4.3e-101 372.1 323 58.5
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 7.4e-101 371.3 321 59.5
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 7.4e-101 371.3 322 59.0
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 7.4e-101 371.3 321 60.4
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 9.7e-101 370.9 322 59.0
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 1.3e-100 370.5 323 58.2
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.3e-100 370.5 331 57.7
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 1.1e-99 367.5 324 59.6
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 1.4e-99 367.1 324 58.3
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 1.4e-99 367.1 322 58.7
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 1.8e-99 366.7 323 59.1
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 4.1e-99 365.5 299 61.9
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 5.3e-99 365.2 322 58.1
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 5.3e-99 365.2 323 57.6
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 6.9e-99 364.8 321 56.1
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 9.1e-99 364.4 322 58.7
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 1.2e-98 364.0 322 59.6
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 1.5e-98 363.6 323 57.9
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.0e-98 363.2 323 57.3
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 3.4e-98 362.5 324 58.3
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 4.5e-98 362.1 332 55.7
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 1.0e-97 360.9 330 57.3
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 1.3e-97 360.5 323 58.2
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 2.9e-97 359.4 323 57.3
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 1.4e-96 357.1 305 59.7
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 1.9e-96 356.7 327 56.9
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 2.5e-96 356.3 323 57.6
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 9.4e-96 354.4 322 56.8
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.6e-95 353.6 324 57.1
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 2.7e-95 352.8 326 58.0
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 2.7e-95 352.8 323 55.4
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 2.7e-95 352.8 324 56.2
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 2.7e-95 352.8 322 57.1
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 3.6e-95 352.4 322 55.3
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 6.1e-95 351.7 326 57.7
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 7.9e-95 351.3 298 62.1
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 1.8e-94 350.1 325 55.7
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 6.7e-94 348.2 323 55.1
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.5e-93 347.1 323 55.1
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 2.0e-93 346.7 323 57.6
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 3.3e-93 345.9 306 57.2
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.7e-92 343.6 323 54.5
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 8.2e-92 341.3 326 56.4
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 3.1e-91 339.3 322 55.3
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 4.1e-91 339.0 322 55.3
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 7.0e-91 338.2 323 55.4
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 5.9e-90 335.1 326 55.8
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 5.9e-90 335.1 332 53.3
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 1.0e-89 334.3 331 56.5
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 1.0e-89 334.3 326 55.8
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 3.8e-89 332.4 325 55.7
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 8.5e-89 331.3 324 55.9
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 8.5e-89 331.3 322 54.3
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 8.5e-89 331.3 331 55.3
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 2.5e-88 329.7 331 55.3
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 1.2e-87 327.4 332 53.0
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 1.2e-87 327.4 319 56.1
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 2.1e-87 326.6 323 54.8
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 2.1e-87 326.6 329 55.0
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 2.1e-87 326.6 328 54.9
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.1e-87 326.6 320 53.1
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.1e-87 326.6 320 53.1
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 2.7e-87 326.2 285 57.9
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 6.1e-87 325.1 331 53.8
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 1.0e-86 324.3 335 54.0
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.0e-86 324.3 322 52.2
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 3.0e-86 322.8 333 52.6
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 5.2e-86 322.0 322 51.9
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 8.8e-86 321.2 328 54.9
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 2.6e-85 319.7 334 53.3
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 2.6e-85 319.7 323 52.9
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 4.4e-85 318.9 298 58.1
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 2.6e-82 309.7 335 52.8
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 4.5e-82 308.9 305 56.1
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 4.5e-82 308.9 314 51.9
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 5.9e-82 308.5 328 50.9
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 8.5e-81 304.7 308 53.9
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 1.9e-80 303.5 328 49.7
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 2.7e-79 299.7 306 54.2
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 2.3e-78 296.6 261 61.7
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 5.2e-78 295.4 308 54.2
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 7.5e-77 291.6 321 50.5
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 1.2e-74 284.3 329 48.9
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 2.7e-74 283.1 279 54.1
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 2.7e-74 283.1 334 45.5
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 1.6e-71 273.9 323 48.3
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 3.6e-71 272.7 241 58.1
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 4.7e-71 272.3 333 44.1
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 3.0e-70 269.6 288 50.7
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 3.4e-69 266.2 344 44.5
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 1.7e-68 263.8 289 52.2
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 6.3e-68 261.9 287 52.3
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 2.4e-67 260.0 268 54.5
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 6.6e-65 251.9 282 51.8
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 1.0e-57 228.0 350 40.6
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 8.6e-57 224.9 242 51.2
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 1.9e-56 223.8 333 38.7
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 8.0e-55 218.4 199 51.8
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 2.2e-52 210.3 356 36.5
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 3.7e-52 209.5 251 49.8
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.2e-50 204.5 204 52.9
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 1.1e-48 198.0 335 35.8
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 4.1e-43 179.5 152 59.9
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.6e-42 177.6 340 33.2
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 5.1e-41 172.6 154 53.9
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 1.1e-40 171.4 185 52.4
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 3.7e-36 156.4 320 32.5
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 1.7e-33 147.5 288 33.3
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 3.9e-25 119.8 74 74.3
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 3.9e-25 119.8 205 38.0
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.9e-24 117.5 172 41.9
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 8.4e-20 102.1 162 34.0
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 1.5e-16 91.3 348 24.1
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.1e-14 85.1 91 47.3
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 7.1e-11 72.4 68 52.9
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 2.7e-10 70.5 90 48.9
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.3e-09 68.2 84 46.4
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 7.4e-08 62.4 49 63.3
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.3e-07 61.6 57 54.4
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 4.8e-07 59.7 68 50.0
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 5.3e-06 56.2 59 47.5


User provided reference genes

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