Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 0.0e+00 1685.6 943 100.0
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 0.0e+00 1653.6 943 97.7
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 0.0e+00 1534.2 963 89.5
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 0.0e+00 1391.3 944 84.9
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 0.0e+00 1382.1 945 82.4
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 0.0e+00 1368.6 964 82.1
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 0.0e+00 1187.2 948 75.1
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 5.1e-275 951.4 953 61.2
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 5.5e-269 931.4 960 60.1
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.3e-262 910.2 914 59.8
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 3.0e-259 899.0 955 59.7
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 5.1e-251 871.7 901 59.5
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 1.7e-249 866.7 985 57.4
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 2.9e-246 855.9 960 56.9
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 1.4e-235 820.5 887 56.0
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 6.7e-235 818.1 961 54.8
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 4.4e-234 815.5 960 55.8
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 1.7e-233 813.5 948 55.2
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 1.1e-232 810.8 957 55.6
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 4.1e-232 808.9 842 58.7
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 3.5e-231 805.8 958 53.5
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 5.9e-231 805.1 971 53.7
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 6.5e-230 801.6 869 56.8
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 1.9e-229 800.0 892 56.1
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 4.2e-229 798.9 951 54.6
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 3.3e-226 789.3 926 54.8
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 2.2e-225 786.6 928 53.7
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 5.3e-224 781.9 912 53.5
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 7.0e-224 781.6 861 56.7
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.9e-222 776.2 958 51.9
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.5e-221 773.9 932 52.8
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 1.5e-221 773.9 952 54.0
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 4.0e-219 765.8 951 53.5
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.2e-218 764.2 894 55.3
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 2.0e-218 763.5 946 52.6
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 3.4e-218 762.7 893 54.9
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.8e-216 756.9 893 54.8
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.8e-216 756.9 926 52.9
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 3.1e-216 756.1 896 52.9
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.0e-215 753.4 893 54.5
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 2.9e-214 749.6 950 52.6
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.1e-213 747.7 869 55.2
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 8.0e-212 741.5 970 50.3
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 2.0e-210 736.9 952 49.9
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 2.6e-210 736.5 895 51.4
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 5.7e-210 735.3 895 51.8
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 5.7e-210 735.3 895 51.8
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 1.1e-208 731.1 917 52.3
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 3.1e-208 729.6 905 51.6
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 3.1e-208 729.6 956 51.0
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 5.4e-208 728.8 894 52.3
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 6.6e-206 721.8 967 51.1
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.5e-205 720.7 902 53.1
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 2.5e-205 719.9 914 51.9
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 2.8e-204 716.5 883 52.7
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 6.1e-204 715.3 934 49.5
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 6.8e-203 711.8 957 48.3
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.2e-202 711.1 903 51.1
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 1.5e-202 710.7 875 52.8
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 6.4e-201 705.3 957 48.3
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 1.9e-200 703.7 814 54.3
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 2.4e-200 703.4 918 49.8
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 4.1e-200 702.6 900 50.6
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 5.4e-200 702.2 911 51.7
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.2e-199 701.0 776 58.0
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 1.6e-199 700.7 932 49.2
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 3.9e-198 696.0 894 52.7
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 8.0e-196 688.3 924 48.5
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 1.5e-194 684.1 889 49.8
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 3.4e-194 682.9 1032 46.5
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 2.2e-193 680.2 1059 46.0
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.4e-192 677.6 901 50.9
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 1.9e-192 677.2 916 48.1
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 4.6e-191 672.5 958 46.9
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.0e-190 671.4 996 47.3
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 1.2e-188 664.5 817 52.8
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 6.2e-188 662.1 904 48.6
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 3.1e-187 659.8 893 50.4
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 1.6e-183 647.5 920 47.9
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 1.1e-181 641.3 954 47.7
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 6.2e-180 635.6 907 47.1
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 5.2e-179 632.5 928 48.4
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 1.1e-176 624.8 847 49.5
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 2.5e-173 613.6 912 46.4
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 5.6e-173 612.5 915 45.2
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 3.1e-171 606.7 909 45.5
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 5.3e-171 605.9 897 45.7
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 1.5e-170 604.4 920 44.5
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.1e-167 594.0 930 46.8
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 1.1e-165 588.2 957 42.6
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 3.3e-165 586.6 956 43.8
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 4.8e-164 582.8 500 66.0
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 6.2e-164 582.4 906 44.6
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 1.4e-163 581.3 778 47.6
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 1.5e-162 577.8 932 42.7
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 3.4e-162 576.6 922 44.8
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 1.4e-160 571.2 906 44.6
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 4.2e-160 569.7 907 44.4
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 1.2e-159 568.2 893 44.5
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 1.6e-159 567.8 907 44.3
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 1.0e-158 565.1 935 43.5
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 2.3e-158 563.9 958 43.6
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 5.1e-158 562.8 804 49.8
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 1.1e-157 561.6 914 43.8
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 2.6e-154 550.4 914 42.9
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 4.9e-145 519.6 891 41.8
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 8.4e-145 518.8 926 41.9
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 3.5e-143 513.5 547 55.9
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 4.6e-143 513.1 931 43.3
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 4.8e-140 503.1 755 46.2
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 2.7e-135 487.3 858 41.4
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 7.7e-122 442.6 892 37.4
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 1.1e-115 422.2 861 37.5
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 6.5e-113 412.9 592 45.6
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 4.5e-106 390.2 483 53.0
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 1.9e-104 384.8 873 35.6
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 5.0e-97 360.1 683 41.1
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 1.7e-89 335.1 439 51.5
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 3.9e-89 334.0 241 69.3
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.5e-88 332.0 534 44.9
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 1.9e-83 315.1 468 49.8
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 5.4e-83 313.5 396 51.8
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 1.3e-81 308.9 527 39.3
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 3.9e-65 254.2 419 46.3
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 1.2e-61 242.7 611 32.6
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 1.7e-57 228.8 214 66.8
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 3.9e-57 227.6 181 66.3
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 5.8e-53 213.8 201 56.2
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 5.3e-46 190.7 896 25.7
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 3.5e-42 177.9 167 57.5
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 1.5e-40 172.6 155 64.5
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 1.5e-40 172.6 645 30.2
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 3.1e-38 164.9 313 43.5
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 4.2e-35 154.5 150 61.3
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 1.9e-32 145.6 279 40.1
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 2.1e-31 142.1 233 37.8
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 4.5e-29 134.4 670 24.3
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 5.9e-29 134.0 176 51.7
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 5.9e-29 134.0 166 49.4
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 2.5e-27 128.6 175 52.0
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 2.5e-27 128.6 97 62.9
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 2.5e-27 128.6 97 62.9
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.0e-25 121.7 384 32.8
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.2e-21 109.8 271 37.3
Oeu005773.1 Olea europaea HOM05D004001 ORTHO05D004559 2.6e-21 108.6 110 61.8
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.4e-17 96.3 159 36.5
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 1.8e-17 95.9 254 35.8
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 6.7e-17 94.0 254 35.0
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 2.8e-15 88.6 120 45.8
TWI56G0254 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.1e-14 85.1 186 34.4
TWI56G1263 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.1e-14 85.1 186 34.4
TWI56G1146 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 4.1e-14 84.7 163 37.4
TWI56G0921 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 9.1e-14 83.6 180 36.1
TWI56G1317 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 9.1e-14 83.6 180 36.1
arahy.Tifrunner.gnm1.ann1.73J9IG Arachis hypogaea HOM05D004001 ORTHO05D004559 4.5e-13 81.3 87 58.6
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 4.5e-13 81.3 65 69.2
SMO147G0240 Selaginella moellendorffii HOM05D004001 ORTHO05D004559 1.3e-12 79.7 271 28.8
arahy.Tifrunner.gnm1.ann1.8SNI53 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.9e-09 68.2 41 85.4
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.6e-08 65.5 97 42.3
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 4.4e-08 64.7 42 73.8
arahy.Tifrunner.gnm1.ann1.GD98VG Arachis hypogaea HOM05D004001 ORTHO05D004559 1.7e-07 62.8 59 62.7
unitig_11.g32402 Utricularia gibba HOM05D052051 ORTHO05D004559 1.7e-07 62.8 46 58.7
unitig_8.g3821 Utricularia gibba HOM05D052051 ORTHO05D004559 1.7e-07 62.8 46 58.7
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 2.8e-07 62.0 56 57.1
Cpa.g.sc18.136 Carica papaya HOM05D004001 ORTHO05D004559 3.7e-07 61.6 90 44.4
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 4.8e-07 61.2 55 58.2
Hma1.2p1_3528F.1_g336630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 4.8e-07 61.2 130 40.8
BcaC07g37285 Brassica carinata HOM05D025803 ORTHO05D027242 6.3e-07 60.8 42 71.4
Dinv00151 Davidia involucrata HOM05D026811 ORTHO05D004559 1.8e-06 59.3 53 56.6
unitig_31.g34037 Utricularia gibba HOM05D004001 ORTHO05D004559 7.0e-06 57.4 98 44.9
arahy.Tifrunner.gnm1.ann1.Y88425 Arachis hypogaea HOM05D004001 ORTHO05D004559 9.1e-06 57.0 50 54.0


User provided reference genes

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