Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 0.0e+00 1169.5 662 100.0
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 0.0e+00 1153.3 662 98.8
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 0.0e+00 1151.7 662 95.9
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 9.3e-308 1059.7 587 90.3
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 2.3e-306 1055.0 670 83.0
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.3e-298 1029.2 543 91.3
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 2.2e-272 942.2 614 81.8
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 2.7e-254 882.1 546 77.1
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 1.8e-250 869.4 556 76.4
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 1.8e-250 869.4 556 76.4
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 2.3e-245 852.4 549 73.6
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 3.9e-245 851.7 546 75.1
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 2.5e-244 849.0 526 77.0
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 1.6e-243 846.3 546 74.7
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 8.0e-243 844.0 522 78.7
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 2.1e-238 829.3 546 72.3
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 2.1e-238 829.3 548 72.8
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 3.5e-238 828.6 554 71.8
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 7.8e-238 827.4 554 71.8
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 1.3e-237 826.6 551 71.9
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.3e-237 826.6 547 72.8
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 2.3e-237 825.9 546 70.7
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.0e-237 825.5 546 73.3
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.0e-237 825.5 547 72.8
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.9e-237 825.1 546 72.9
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 5.1e-237 824.7 546 73.3
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.9e-236 822.8 551 73.3
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 9.5e-236 820.5 546 72.7
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 2.1e-235 819.3 556 70.3
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 3.6e-235 818.5 560 72.0
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 4.7e-235 818.1 548 71.4
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 6.2e-235 817.8 560 72.0
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 1.1e-234 817.0 548 71.2
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 1.1e-234 817.0 543 71.6
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 1.4e-234 816.6 547 71.8
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 2.3e-234 815.8 547 70.9
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 4.0e-234 815.1 548 71.9
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 8.9e-234 813.9 549 71.0
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 1.2e-233 813.5 546 72.0
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 2.0e-233 812.8 547 72.4
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 2.6e-233 812.4 546 71.4
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.6e-233 812.4 546 71.4
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.6e-233 812.4 546 71.4
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 5.8e-233 811.2 546 71.2
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 7.5e-233 810.8 547 70.7
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 1.3e-232 810.1 538 73.4
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.3e-232 810.1 546 71.2
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 8.3e-232 807.4 550 70.0
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.1e-231 807.0 554 70.8
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.4e-231 806.6 546 71.1
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.9e-231 806.2 545 70.3
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 7.1e-231 804.3 547 70.7
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 3.5e-230 802.0 548 70.8
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 3.9e-229 798.5 549 69.6
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 3.9e-229 798.5 555 69.5
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 3.9e-229 798.5 557 68.8
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 8.6e-229 797.3 548 70.4
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 1.1e-228 797.0 547 71.7
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 1.1e-228 797.0 547 70.4
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 9.5e-228 793.9 547 70.0
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 6.2e-227 791.2 549 70.1
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 1.1e-226 790.4 548 70.1
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 1.1e-226 790.4 548 70.1
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.1e-226 790.4 561 69.5
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 1.1e-226 790.4 556 69.8
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 2.4e-226 789.3 550 69.6
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 1.3e-224 783.5 548 69.7
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 4.9e-224 781.6 550 69.3
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 1.9e-223 779.6 553 70.2
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.9e-223 779.6 547 69.3
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 5.4e-223 778.1 551 69.5
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 4.6e-222 775.0 546 70.0
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 7.8e-222 774.2 545 68.8
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 3.0e-221 772.3 550 69.5
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 2.5e-220 769.2 536 69.2
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 4.3e-220 768.5 541 69.7
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 5.3e-218 761.5 536 69.6
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 1.7e-216 756.5 540 69.6
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 3.8e-216 755.4 558 67.9
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 1.1e-215 753.8 506 71.9
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 9.3e-215 750.7 552 67.9
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 3.5e-214 748.8 556 67.4
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 6.0e-214 748.0 562 65.8
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 1.7e-213 746.5 558 67.0
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 4.3e-212 741.9 550 67.8
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 5.6e-212 741.5 548 67.0
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 9.6e-212 740.7 571 65.5
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 6.2e-211 738.0 563 65.5
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 6.2e-211 738.0 556 66.0
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 1.8e-210 736.5 540 67.8
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 5.3e-210 734.9 569 64.5
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 2.0e-209 733.0 549 66.1
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 2.6e-209 732.6 550 65.8
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 9.9e-209 730.7 546 65.6
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 2.2e-208 729.6 536 67.5
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 4.9e-208 728.4 536 67.4
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 5.4e-207 724.9 539 67.2
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 5.4e-207 724.9 539 67.2
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 5.4e-207 724.9 539 67.2
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.3e-203 713.8 553 64.6
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 2.8e-203 712.6 550 64.4
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 3.1e-202 709.1 527 67.4
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 5.3e-202 708.4 549 66.3
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 9.0e-202 707.6 542 63.5
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 2.2e-200 703.0 541 66.2
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 3.2e-199 699.1 512 68.4
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 5.5e-199 698.4 549 64.1
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 2.7e-198 696.0 492 69.1
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 9.6e-196 687.6 535 67.9
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 1.4e-194 683.7 553 61.5
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 3.8e-192 675.6 552 63.8
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 4.3e-188 662.1 553 62.4
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 4.3e-188 662.1 553 62.4
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 4.3e-188 662.1 553 62.4
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 4.5e-185 652.1 540 63.3
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.1e-183 647.5 549 60.3
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 5.7e-180 635.2 537 62.2
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 3.7e-179 632.5 555 59.3
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 4.1e-178 629.0 576 57.6
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 2.0e-172 610.1 430 70.9
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 1.4e-170 604.0 570 56.8
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 1.9e-167 593.6 547 57.8
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 7.0e-162 575.1 593 52.8
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.7e-155 553.9 453 63.1
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 2.2e-155 553.5 408 67.2
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 2.2e-147 526.9 553 51.0
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 2.8e-147 526.6 314 78.7
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.8e-138 497.3 551 47.7
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 1.5e-127 461.1 336 66.1
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.2e-121 441.4 381 56.7
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.3e-120 438.0 391 55.2
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 7.6e-100 369.0 285 62.8
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 3.8e-83 313.5 347 51.0
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 2.8e-78 297.4 547 36.0
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 6.5e-67 259.6 392 40.8
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 2.8e-62 244.2 218 58.3
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 6.5e-59 233.0 176 63.6
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 1.1e-42 179.1 141 61.0
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 8.3e-38 162.9 164 53.0
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 2.3e-32 144.8 296 31.1
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 5.6e-26 123.6 77 77.9
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 3.4e-23 114.4 101 59.4
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 1.9e-18 98.6 96 54.2
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 3.3e-18 97.8 163 35.0
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 2.1e-17 95.1 80 57.5
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 1.0e-11 76.3 59 59.3
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 3.1e-08 64.7 57 61.4
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 2.6e-07 61.6 33 81.8


User provided reference genes

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