Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 8.8e-122 440.3 218 100.0
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 4.1e-119 431.4 218 97.7
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 8.0e-115 417.2 218 95.0
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 4.7e-91 338.2 224 78.1
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 4.7e-83 311.6 222 71.2
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 1.2e-81 307.0 216 71.8
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 2.0e-81 306.2 174 83.3
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 1.3e-80 303.5 219 66.2
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 3.8e-80 302.0 216 70.4
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 8.4e-80 300.8 215 69.3
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 1.1e-79 300.4 219 67.1
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 3.2e-79 298.9 223 67.7
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 9.2e-79 297.4 219 66.7
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 1.2e-78 297.0 218 66.5
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 1.2e-78 297.0 224 65.6
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 1.6e-78 296.6 218 67.9
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 2.1e-78 296.2 217 67.3
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 4.6e-78 295.0 220 65.0
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 1.0e-77 293.9 213 68.5
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 1.7e-77 293.1 222 67.1
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 2.3e-77 292.7 221 65.2
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 3.0e-77 292.4 224 65.2
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 3.9e-77 292.0 215 67.9
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 6.6e-77 291.2 216 68.1
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 8.6e-77 290.8 185 73.5
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 1.1e-76 290.4 225 66.2
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 1.9e-76 289.7 190 72.6
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 2.5e-76 289.3 219 68.9
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 2.5e-76 289.3 225 66.2
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 5.6e-76 288.1 223 65.0
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 9.6e-76 287.3 230 66.5
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 9.6e-76 287.3 224 65.6
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 9.6e-76 287.3 222 63.1
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 9.6e-76 287.3 208 67.8
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.1e-75 286.2 210 67.1
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 2.1e-75 286.2 200 69.0
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 2.8e-75 285.8 222 64.9
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 4.7e-75 285.0 198 69.2
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 4.7e-75 285.0 191 72.3
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 6.2e-75 284.6 221 65.2
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 6.2e-75 284.6 219 66.7
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 1.8e-74 283.1 206 68.4
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 1.8e-74 283.1 220 65.5
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 2.4e-74 282.7 222 63.1
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 3.1e-74 282.3 224 65.6
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 3.1e-74 282.3 221 66.1
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 4.0e-74 282.0 163 80.4
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 4.0e-74 282.0 163 80.4
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 4.0e-74 282.0 215 65.6
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 6.9e-74 281.2 174 73.6
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 6.9e-74 281.2 197 71.6
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 8.9e-74 280.8 218 64.7
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 1.2e-73 280.4 220 60.5
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 2.6e-73 279.3 199 68.3
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 2.6e-73 279.3 198 69.2
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 7.6e-73 277.7 217 64.1
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 1.7e-72 276.6 218 63.8
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 1.7e-72 276.6 229 63.3
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 2.9e-72 275.8 173 76.3
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 4.9e-72 275.0 194 70.6
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 6.4e-72 274.6 175 72.0
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 6.4e-72 274.6 207 69.6
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 8.4e-72 274.2 203 65.5
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 8.4e-72 274.2 194 70.1
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 8.4e-72 274.2 169 78.1
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 1.9e-71 273.1 185 69.7
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 5.4e-71 271.6 185 69.2
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 2.7e-70 269.2 186 71.5
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 2.7e-70 269.2 185 69.2
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 3.5e-70 268.9 158 79.1
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 6.0e-70 268.1 188 70.7
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 1.0e-69 267.3 186 70.4
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 1.0e-69 267.3 186 71.0
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 1.3e-69 266.9 186 71.0
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 1.3e-69 266.9 206 64.6
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 2.3e-69 266.2 205 66.3
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 3.0e-69 265.8 214 65.9
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 3.0e-69 265.8 186 70.4
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 3.0e-69 265.8 186 70.4
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 8.7e-69 264.2 177 69.5
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 1.1e-68 263.8 186 69.9
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 5.6e-68 261.5 174 69.0
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 9.6e-68 260.8 194 68.6
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 1.3e-67 260.4 206 67.0
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 2.1e-67 259.6 179 70.4
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 4.8e-67 258.5 221 61.1
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 6.2e-67 258.1 205 57.6
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 1.1e-66 257.3 181 66.3
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 1.1e-66 257.3 150 79.3
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 9.9e-65 250.8 151 78.1
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 1.3e-64 250.4 166 71.1
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 1.3e-64 250.4 186 67.7
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 4.9e-64 248.4 190 65.8
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 2.7e-62 242.7 155 71.6
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 5.1e-61 238.4 149 75.2
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 5.6e-60 235.0 210 58.1
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 2.8e-59 232.6 225 59.6
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 3.6e-59 232.3 197 58.9
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 2.0e-57 226.5 212 55.2
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 7.6e-57 224.6 169 61.5
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 7.6e-57 224.6 181 57.5
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 9.9e-57 224.2 216 52.3
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 2.4e-55 219.5 193 63.2
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 5.5e-55 218.4 172 65.1
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 9.3e-55 217.6 227 52.0
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 1.1e-52 210.7 151 64.2
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 1.4e-50 203.8 110 89.1
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 4.0e-50 202.2 218 52.3
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 3.2e-47 192.6 216 49.5
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 2.7e-46 189.5 163 60.1
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 5.7e-44 181.8 182 49.5
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 8.5e-40 167.9 107 73.8
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 2.3e-37 159.8 139 56.1
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 5.7e-36 155.2 93 78.5
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 9.7e-36 154.5 125 57.6
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 4.5e-33 145.6 98 64.3
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 5.9e-33 145.2 111 66.7
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 7.2e-31 138.3 95 65.3
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.6e-30 136.0 76 81.6
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 5.1e-29 132.1 159 45.9
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 1.1e-26 124.4 83 67.5
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 9.1e-26 121.3 96 62.5
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 3.4e-25 119.4 109 54.1
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 7.7e-25 118.2 140 50.0
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 1.7e-24 117.1 96 60.4
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 8.8e-21 104.8 79 60.8
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 4.8e-19 99.0 73 61.6
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 1.0e-16 91.3 54 70.4
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 5.0e-16 89.0 68 61.8
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 6.7e-13 78.6 81 59.3
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 3.3e-12 76.3 59 61.0


User provided reference genes

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