Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g036880 Solanum pennellii HOM05D006696 ORTHO05D008683 0.0e+00 1240.3 618 100.0
Solyc01g091130.4 Solanum lycopersicum HOM05D006696 ORTHO05D008683 0.0e+00 1191.4 618 96.3
PGSC0003DMG400025962 Solanum tuberosum HOM05D006696 ORTHO05D008683 0.0e+00 1184.1 621 94.0
CAN.G388.34 Capsicum annuum HOM05D006696 ORTHO05D008683 0.0e+00 1110.1 634 88.8
Nitab4.5_0010616g0010 Nicotiana tabacum HOM05D006696 ORTHO05D008683 0.0e+00 1082.4 670 81.2
Nitab4.5_0000457g0140 Nicotiana tabacum HOM05D006696 ORTHO05D008683 4.2e-312 1073.5 659 83.0
Peaxi162Scf00013g03019 Petunia axillaris HOM05D006696 ORTHO05D008683 1.3e-308 1062.4 628 85.5
Cc02_g24120 Coffea canephora HOM05D006696 ORTHO05D008683 1.0e-284 983.0 575 79.7
Hma1.2p1_0301F.1_g118560 Hydrangea macrophylla HOM05D006696 ORTHO05D008683 3.4e-280 968.0 575 78.4
CSS0014714 Camellia sinensis var. sinensis HOM05D006696 ORTHO05D008683 9.4e-278 959.9 583 77.0
Thecc.08G173400 Theobroma cacao HOM05D006696 ORTHO05D008683 1.8e-276 955.7 578 76.6
CSS0026641 Camellia sinensis var. sinensis HOM05D006696 ORTHO05D008683 2.3e-276 955.3 583 76.7
Gohir.D13G120600 Gossypium hirsutum HOM05D006696 ORTHO05D008683 3.0e-276 954.9 579 76.3
Gorai.013G134800 Gossypium raimondii HOM05D006696 ORTHO05D008683 3.0e-276 954.9 579 76.3
Gohir.A13G117300 Gossypium hirsutum HOM05D006696 ORTHO05D008683 6.3e-274 947.2 579 75.5
HanXRQChr03g0093971 Helianthus annuus HOM05D006696 ORTHO05D008683 1.7e-271 939.1 572 76.9
TWI14G1225 Tripterygium wilfordii HOM05D006696 ORTHO05D008683 1.7e-271 939.1 576 75.2
Prupe.2G142200 Prunus persica HOM05D006696 ORTHO05D008683 2.2e-271 938.7 576 76.4
Lj7C531T6 Lonicera japonica HOM05D006696 ORTHO05D008683 1.9e-270 935.6 568 76.1
Lsat_1_v5_gn_3_132380 Lactuca sativa HOM05D006696 ORTHO05D008683 3.2e-270 934.9 622 71.5
COL.COLO4_24599 Corchorus olitorius HOM05D006696 ORTHO05D008683 4.2e-270 934.5 580 74.5
ClCG05G002380 Citrullus lanatus HOM05D006696 ORTHO05D008683 7.2e-270 933.7 579 75.6
Manes.01G267400 Manihot esculenta HOM05D006696 ORTHO05D008683 7.2e-270 933.7 577 75.0
Rhsim01G0149400 Rhododendron simsii HOM05D006696 ORTHO05D008683 1.6e-269 932.6 580 74.8
Atru.chr5.281 Acer truncatum HOM05D006696 ORTHO05D008683 2.3e-268 928.7 588 73.0
Potri.002G146100 Populus trichocarpa HOM05D006696 ORTHO05D008683 3.0e-268 928.3 575 74.8
Sed0011228 Sechium edule HOM05D006696 ORTHO05D008683 3.0e-268 928.3 576 74.3
MD07G1119000 Malus domestica HOM05D006696 ORTHO05D008683 4.0e-268 927.9 575 74.8
CsaV3_3G009820 Cucumis sativus L. HOM05D006696 ORTHO05D008683 2.0e-267 925.6 579 74.8
RcHm_v2.0_Chr1g0349711 Rosa chinensis HOM05D006696 ORTHO05D008683 9.7e-267 923.3 571 75.8
Sabra02G0113800 Salix brachista HOM05D006696 ORTHO05D008683 1.3e-266 922.9 575 74.3
MSTRG.20736 Avicennia marina HOM05D006696 ORTHO05D008683 3.7e-266 921.4 574 75.1
Nn6g34076 Nelumbo nucifera HOM05D006696 ORTHO05D008683 8.2e-266 920.2 575 75.1
Migut.B01614 Erythranthe guttata HOM05D006696 ORTHO05D008683 1.1e-265 919.8 626 70.9
vmacro21023 Vaccinium macrocarpon HOM05D006696 ORTHO05D008683 2.4e-265 918.7 711 63.9
MELO3C006203.2 Cucumis melo HOM05D006696 ORTHO05D008683 4.1e-265 917.9 575 74.6
TAR629G0060 Trochodendron aralioides HOM05D006696 ORTHO05D008683 4.1e-265 917.9 579 74.8
Eucgr.D02468 Eucalyptus grandis HOM05D006696 ORTHO05D008683 7.0e-265 917.1 586 72.9
Ciclev10019231m.g Citrus clementina HOM05D006696 ORTHO05D008683 4.5e-264 914.4 586 72.4
SGA_v2.0_scaffold95G28911 Striga asiatica HOM05D006696 ORTHO05D008683 2.2e-263 912.1 623 70.0
EL10Ac1g00866 Beta vulgaris HOM05D006696 ORTHO05D008683 5.0e-263 911.0 578 74.0
Lalb_Chr07g0189961 Lupinus albus HOM05D006696 ORTHO05D008683 2.5e-262 908.7 573 74.2
CiPaw.01G264000 Carya illinoinensis HOM05D006696 ORTHO05D008683 9.4e-262 906.7 586 72.0
QL08p052869 Quercus lobata HOM05D006696 ORTHO05D008683 2.7e-261 905.2 590 72.5
AUR62004189 Chenopodium quinoa HOM05D006696 ORTHO05D008683 6.1e-261 904.0 574 73.7
Haze_16792 Corylus avellana HOM05D006696 ORTHO05D008683 8.0e-261 903.7 629 70.1
Glyma.03G028100 Glycine max HOM05D006696 ORTHO05D008683 1.4e-260 902.9 573 73.1
THA.LOC104814083 Tarenaya hassleriana HOM05D006696 ORTHO05D008683 3.0e-260 901.7 576 72.2
Medtr4g025130 Medicago truncatula HOM05D006696 ORTHO05D008683 4.0e-260 901.4 574 73.2
VMungo0331G0021 Vigna mungo HOM05D006696 ORTHO05D008683 4.0e-260 901.4 571 72.5
Psat7g231000 Pisum sativum HOM05D006696 ORTHO05D008683 1.5e-259 899.4 574 73.7
Ca_19926_v3 Cicer arietinum L. HOM05D006696 ORTHO05D008683 2.0e-259 899.0 580 72.8
Aqoxy7G00691 Aquilegia oxysepala HOM05D006696 ORTHO05D008683 4.4e-259 897.9 588 71.4
TPR.G7586 Trifolium pratense HOM05D006696 ORTHO05D008683 4.1e-257 891.3 581 72.5
Phvul.010G081400 Phaseolus vulgaris HOM05D006696 ORTHO05D008683 5.4e-257 891.0 571 72.0
Aa31LG1G11340 Aethionema arabicum HOM05D006696 ORTHO05D008683 9.1e-257 890.2 570 72.6
unitig_22.g5383 Utricularia gibba HOM05D006696 ORTHO05D008683 2.0e-256 889.0 574 72.0
Ah.05g174590 Amaranthus hybridus HOM05D006696 ORTHO05D008683 7.7e-256 887.1 578 71.3
Hund27369 Selenicereus undatus HOM05D006696 ORTHO05D008683 6.5e-255 884.0 571 72.9
FvH4_7g11430 Fragaria vesca HOM05D006696 ORTHO05D008683 8.6e-255 883.6 569 72.6
FAN01G1519 Fragaria x ananassa HOM05D006696 ORTHO05D008683 1.5e-254 882.9 569 72.2
arahy.Tifrunner.gnm1.ann1.30BUB6 Arachis hypogaea HOM05D006696 ORTHO05D008683 5.5e-254 880.9 580 70.9
FAN06G3694 Fragaria x ananassa HOM05D006696 ORTHO05D008683 5.5e-254 880.9 569 72.2
arahy.Tifrunner.gnm1.ann1.PBYD8I Arachis hypogaea HOM05D006696 ORTHO05D008683 9.5e-254 880.2 580 70.7
FAN06G1977 Fragaria x ananassa HOM05D006696 ORTHO05D008683 1.2e-253 879.8 569 72.2
ECA232G1408 Erigeron canadensis HOM05D006696 ORTHO05D008683 8.0e-253 877.1 574 71.4
Cpa.g.sc611.2 Carica papaya HOM05D006696 ORTHO05D008683 5.2e-252 874.4 534 74.5
Duzib177G0277 Durio zibethinus HOM05D006696 ORTHO05D008683 1.1e-249 866.7 575 71.5
FAN03G1153 Fragaria x ananassa HOM05D006696 ORTHO05D008683 3.1e-249 865.1 569 71.4
MBI12_g20403_MAGBIO Magnolia biondii HOM05D006696 ORTHO05D008683 6.1e-245 850.9 579 70.1
Sp1g37340 Schrenkiella parvula HOM05D006696 ORTHO05D008683 1.0e-244 850.1 585 69.9
AL1G10260 Arabidopsis lyrata HOM05D006696 ORTHO05D008683 1.3e-242 843.2 575 69.7
PSO782G1103 Papaver somniferum HOM05D006696 ORTHO05D008683 1.1e-241 840.1 620 68.1
GSVIVG01027661001 Vitis vinifera HOM05D006696 ORTHO05D008683 1.4e-241 839.7 568 71.1
Lj3g0014279 Lotus japonicus HOM05D006696 ORTHO05D008683 2.4e-241 839.0 527 73.6
PSO478G1798 Papaver somniferum HOM05D006696 ORTHO05D008683 7.0e-241 837.4 628 67.4
SalBow5G3816 Salvia bowleyana HOM05D006696 ORTHO05D008683 4.6e-240 834.7 534 74.0
Carub.0001s0021 Capsella rubella HOM05D006696 ORTHO05D008683 9.5e-238 827.0 570 68.1
C06p05680 Brassica napus HOM05D006696 ORTHO05D008683 4.7e-237 824.7 583 68.8
BcaB07g33486 Brassica carinata HOM05D006696 ORTHO05D008683 1.1e-236 823.5 580 68.8
Thhalv10007140m.g Eutrema salsugineum HOM05D006696 ORTHO05D008683 3.1e-236 822.0 582 68.2
AT1G02020 Arabidopsis thaliana HOM05D006696 ORTHO05D008683 5.2e-236 821.2 578 67.1
Sc26g0001290 Simmondsia chinensis HOM05D006696 ORTHO05D008683 6.8e-236 820.8 550 71.6
BcaC08g43220 Brassica carinata HOM05D006696 ORTHO05D008683 2.2e-234 815.8 584 68.3
BolC6t35679H Brassica oleracea HOM05D006696 ORTHO05D008683 2.2e-234 815.8 584 68.3
A06p03080 Brassica napus HOM05D006696 ORTHO05D008683 6.4e-234 814.3 581 67.8
CDE04G1815 Ceratophyllum demersum HOM05D006696 ORTHO05D008683 4.1e-233 811.6 573 66.7
BraA06t23521Z Brassica rapa HOM05D006696 ORTHO05D008683 1.9e-230 802.7 579 67.7
HPP92_022287 Vanilla planifolia HOM05D006696 ORTHO05D008683 3.5e-224 781.9 629 60.6
AUR62013656 Chenopodium quinoa HOM05D006696 ORTHO05D008683 2.2e-218 762.7 572 64.7
Actinidia33475 Actinidia chinensis HOM05D006696 ORTHO05D008683 6.0e-216 754.6 608 62.0
ATR0041G020 Amborella trichopoda HOM05D006696 ORTHO05D008683 6.6e-207 724.5 569 61.3
SEGI_31859 Sequoiadendron giganteum HOM05D006696 ORTHO05D008683 7.6e-195 684.5 545 60.6
Os10g0190800 Oryza sativa ssp. japonica HOM05D006696 ORTHO05D008683 4.6e-192 675.2 575 58.8
Zm00001eb145800 Zea mays HOM05D006696 ORTHO05D008683 7.6e-187 657.9 571 56.7
SMO011G0006 Selaginella moellendorffii HOM05D006696 ORTHO05D008683 8.4e-186 654.4 581 56.6
CARHR000330 Cardamine hirsuta HOM05D006696 ORTHO05D008683 4.1e-180 635.6 465 65.4
DCAR_015916 Daucus carota HOM05D006696 ORTHO05D008683 2.7e-176 622.9 373 77.2
Mapoly0117s0009 Marchantia polymorpha HOM05D006696 ORTHO05D008683 2.3e-175 619.8 588 54.1
AagrBONN_evm.TU.Sc2ySwM_228.1723 Anthoceros agrestis HOM05D006696 ORTHO05D008683 5.1e-175 618.6 599 53.3
Solyc01g091140.4 Solanum lycopersicum HOM05D006696 ORTHO05D008683 8.8e-175 617.8 524 63.4
Pp3c18_8320 Physcomitrium patens HOM05D006696 ORTHO05D008683 2.0e-171 606.7 572 52.4
Dinv32364 Davidia involucrata HOM05D006696 ORTHO05D008683 6.0e-123 445.7 256 79.7
CANSAT21G0759 Cannabis sativa HOM05D006696 ORTHO05D008683 2.9e-93 347.1 210 75.7
Sopen01g036900 Solanum pennellii HOM05D006696 ORTHO05D008683 7.4e-81 305.8 259 69.9
Oeu037929.1 Olea europaea HOM05D006696 ORTHO05D008683 7.1e-76 289.3 186 72.6
SGA_v2.0_scaffold581G53050 Striga asiatica HOM05D006696 ORTHO05D008683 1.3e-72 278.5 196 65.8
CARHR000320 Cardamine hirsuta HOM05D006696 ORTHO05D008683 1.8e-50 204.9 107 84.1
Atru.chr4.660 Acer truncatum HOM05D006696 ORTHO05D030753 6.1e-43 179.9 133 60.2
Sopen01g036890 Solanum pennellii HOM05D006696 ORTHO05D008683 4.5e-30 137.1 80 82.5
Zm00001eb027220 Zea mays HOM05D006696 ORTHO05D008683 2.1e-27 128.3 110 55.5
VMungo0720G2385 Vigna mungo HOM05D006696 ORTHO05D008683 1.5e-25 122.1 79 69.6
VMungo1309G0520 Vigna mungo HOM05D006696 ORTHO05D008683 5.4e-23 113.6 65 75.4
Phvul.010G066778 Phaseolus vulgaris HOM05D006696 ORTHO05D008683 8.0e-19 99.8 68 67.6
SalBow5G1567 Salvia bowleyana HOM05D006696 ORTHO05D008683 1.8e-15 88.6 43 95.3
Cpa.g.sc14.75 Carica papaya HOM05D006696 ORTHO05D008683 5.0e-13 80.5 37 91.9
Lsat_1_v5_gn_8_142581 Lactuca sativa HOM05D006696 ORTHO05D030753 5.6e-12 77.0 135 37.0
Atru.chr4.903 Acer truncatum HOM05D006696 ORTHO05D030753 8.0e-11 73.2 42 71.4
Zm00001eb027230 Zea mays HOM05D006696 ORTHO05D008683 7.8e-06 56.6 62 53.2


User provided reference genes

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