Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 2500.7 1262 100.0
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 2087.0 1254 83.9
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1984.9 1274 79.6
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1971.8 1184 83.5
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1960.7 1262 80.7
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1774.6 1268 71.5
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1759.6 1269 69.7
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1753.8 1256 71.0
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1743.8 1265 69.9
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1738.0 1258 70.0
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1737.6 1251 70.8
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1733.0 1265 70.0
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1729.1 1262 69.0
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1728.8 1267 69.5
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1724.9 1254 69.9
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1724.1 1267 69.1
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1723.4 1267 69.2
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1722.2 1257 70.2
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1721.8 1303 67.5
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1721.4 1297 68.3
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1720.3 1257 69.8
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1716.4 1254 68.9
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1714.5 1270 69.4
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1711.0 1257 68.9
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1711.0 1268 68.8
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1709.5 883 97.2
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1709.1 1252 68.8
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1707.6 1252 69.0
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1704.9 1262 69.7
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1696.4 1274 68.5
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1694.9 1268 68.5
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1694.1 1264 68.4
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1691.0 1264 68.4
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1689.5 1261 67.7
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1687.9 1271 68.0
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1687.5 1302 67.2
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1686.4 1255 68.6
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1685.2 1269 68.7
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1685.2 1259 67.6
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1685.2 1257 68.5
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1684.1 1271 67.4
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1679.5 1261 67.1
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1678.7 1272 67.0
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1678.3 1260 67.7
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1674.4 1257 67.4
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1674.1 1262 67.1
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1672.9 1270 67.2
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1671.8 1271 66.2
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1671.8 1313 65.8
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1668.3 1253 67.4
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1668.3 1269 67.2
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1667.1 1269 66.9
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1666.0 1265 66.6
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1661.4 1257 67.5
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1656.0 1267 66.1
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1653.6 1258 66.7
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1652.1 1263 65.9
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1650.2 1322 64.5
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1649.4 1252 66.5
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1649.4 1264 66.1
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1649.0 1332 64.3
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1646.3 1254 66.3
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1640.9 1261 66.9
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1632.1 1260 66.7
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1628.2 1258 64.8
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1617.8 1258 65.8
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1612.8 1259 65.9
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1602.8 1299 64.6
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1601.3 1312 63.4
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1597.0 1258 65.0
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1595.1 1260 65.5
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1593.6 1259 64.4
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1593.2 1257 65.2
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1588.2 1268 64.9
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1578.9 1184 68.0
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1572.4 1188 67.0
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1565.8 1263 63.6
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1565.4 1270 64.2
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1565.1 1252 64.2
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1556.6 1247 65.0
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 0.0e+00 1548.5 789 98.4
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1545.8 1252 63.1
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1545.4 1252 63.1
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1543.5 1171 66.8
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1538.9 1268 62.5
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1537.3 1250 63.1
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1536.2 1273 62.2
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1508.8 1253 62.3
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1505.7 1258 62.2
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1477.2 1184 64.2
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1476.5 1009 73.7
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1467.6 1258 60.3
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1453.7 1209 62.4
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1424.8 1264 59.5
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1401.0 1023 68.6
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1401.0 1293 57.4
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1377.5 1257 57.6
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1272.7 1041 63.9
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 0.0e+00 1266.9 812 79.1
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1179.1 1256 52.5
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1127.5 969 60.0
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1125.5 1264 48.8
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1124.0 1264 48.3
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1078.5 948 61.1
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 4.1e-304 1048.5 889 61.5
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 3.6e-292 1008.8 1226 46.2
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 1.7e-289 1000.0 655 76.5
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 3.8e-265 919.1 476 98.5
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 1.7e-262 910.2 1233 43.7
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 2.4e-219 766.9 496 79.2
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 7.4e-213 745.3 540 70.2
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 1.4e-211 741.1 1284 36.2
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 9.1e-211 738.4 669 60.8
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 4.0e-182 643.3 599 56.3
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 9.8e-181 638.6 1409 34.0
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 2.8e-180 637.1 1268 33.6
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 1.1e-179 635.2 623 53.6
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 8.1e-127 459.5 1189 29.9
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 8.1e-127 459.5 711 41.6
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.8e-126 458.4 325 68.3
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 2.3e-113 414.8 276 74.6
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 2.8e-95 354.8 245 75.5
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 6.3e-95 353.6 240 75.0
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 3.1e-94 351.3 339 54.6
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 7.2e-83 313.5 267 59.2
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 7.2e-83 313.5 267 59.2
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.6e-74 285.8 254 57.9
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 1.4e-73 282.7 200 70.0
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 3.2e-54 218.4 179 63.1
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 3.6e-50 204.9 161 66.5
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 1.8e-49 202.6 222 51.8
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 2.4e-46 192.2 174 58.0
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 7.5e-40 170.6 161 52.2
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.7e-39 169.5 104 76.9
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 1.4e-38 166.4 1222 22.6
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 1.0e-36 160.2 114 72.8
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 4.4e-32 144.8 104 75.0
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.9e-27 129.4 119 58.0
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 5.6e-27 127.9 120 55.8
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 2.8e-26 125.6 120 54.2
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 1.7e-20 106.3 132 44.7
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 1.1e-19 103.6 162 42.0
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 2.1e-18 99.4 158 41.1
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 1.5e-16 93.2 123 46.3
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 5.8e-16 91.3 93 50.5
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 9.9e-16 90.5 62 71.0
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 5.4e-14 84.7 61 75.4
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 7.9e-13 80.9 123 40.7
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 1.5e-11 76.6 78 53.8
PGSC0003DMG400046841 Solanum tuberosum HOM05D014102 ORTHO05D022958 2.1e-10 72.8 100 45.0
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 3.7e-10 72.0 47 72.3
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 1.4e-09 70.1 236 25.4
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 1.8e-09 69.7 43 74.4
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 1.8e-09 69.7 80 41.2
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 3.4e-08 65.5 120 36.7
CAN.G494.1 Capsicum annuum HOM05D014102 ORTHO05D016168 1.7e-07 63.2 67 53.7
Cc05_g02990 Coffea canephora HOM05D004478 ORTHO05D018907 3.2e-06 58.9 58 53.4
Gohir.A05G315500 Gossypium hirsutum HOM05D004478 ORTHO05D016211 3.2e-06 58.9 50 56.0
CAN.G134.70 Capsicum annuum HOM05D014102 ORTHO05D016168 9.3e-06 57.4 57 50.9


User provided reference genes

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