Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 4.9e-91 337.8 173 100.0
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 9.6e-87 323.6 169 97.0
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 6.4e-83 310.8 172 90.7
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 5.1e-80 301.2 169 89.3
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.6e-78 296.2 163 89.6
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.6e-78 296.2 169 87.6
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 4.9e-67 258.1 169 75.7
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 8.4e-67 257.3 167 74.9
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 8.4e-67 257.3 169 75.7
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 1.1e-66 256.9 166 74.1
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 9.3e-66 253.8 164 75.0
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 2.1e-65 252.7 166 74.1
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 4.6e-65 251.5 169 71.6
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 4.6e-65 251.5 166 75.9
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 2.3e-64 249.2 168 73.8
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 2.3e-64 249.2 166 74.1
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 3.0e-64 248.8 168 73.2
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 3.0e-64 248.8 162 75.3
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.1e-63 246.9 165 73.9
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 1.5e-63 246.5 165 73.9
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.9e-63 246.1 165 73.9
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 4.3e-63 245.0 166 72.9
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 5.6e-63 244.6 166 73.5
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 7.4e-63 244.2 164 74.4
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 7.4e-63 244.2 165 73.3
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 1.6e-62 243.0 163 74.2
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 2.1e-62 242.7 165 74.5
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 2.1e-62 242.7 163 71.2
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 3.7e-62 241.9 166 71.7
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 3.7e-62 241.9 168 71.4
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 3.7e-62 241.9 165 73.3
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 4.8e-62 241.5 153 77.8
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 4.8e-62 241.5 166 71.1
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 8.1e-62 240.7 166 71.7
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 8.1e-62 240.7 165 73.3
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 2.4e-61 239.2 166 71.7
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 2.4e-61 239.2 166 71.7
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 2.4e-61 239.2 166 71.7
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 3.1e-61 238.8 166 69.3
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 3.1e-61 238.8 163 73.0
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 3.1e-61 238.8 168 72.0
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 4.0e-61 238.4 166 71.7
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 4.0e-61 238.4 163 73.0
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 6.9e-61 237.7 162 71.0
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 6.9e-61 237.7 166 70.5
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 9.0e-61 237.3 166 70.5
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 1.2e-60 236.9 166 69.9
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 1.5e-60 236.5 168 67.9
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.5e-60 236.5 168 71.4
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 2.0e-60 236.1 166 69.3
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.0e-60 236.1 166 69.3
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.0e-60 236.1 166 69.3
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 2.0e-60 236.1 166 69.3
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 2.6e-60 235.7 166 71.7
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 2.6e-60 235.7 166 69.3
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.6e-60 235.7 168 70.8
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 3.4e-60 235.3 166 69.3
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 7.6e-60 234.2 166 68.7
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 1.7e-59 233.0 166 68.1
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.2e-59 232.6 194 63.9
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 2.9e-59 232.3 166 69.3
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 3.8e-59 231.9 166 69.3
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 4.9e-59 231.5 166 68.1
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 6.5e-59 231.1 166 68.7
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 8.4e-59 230.7 168 67.3
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 1.4e-58 229.9 169 66.9
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 4.2e-58 228.4 166 69.3
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 1.6e-57 226.5 159 71.1
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 1.6e-57 226.5 166 67.5
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 3.5e-57 225.3 154 73.4
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 6.7e-56 221.1 167 66.5
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 1.5e-55 219.9 162 66.7
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 2.5e-55 219.2 188 60.1
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 1.6e-54 216.5 162 65.4
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 1.6e-54 216.5 164 65.2
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.8e-54 215.7 190 58.4
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 3.7e-54 215.3 148 72.3
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 1.1e-53 213.8 138 75.4
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 2.4e-53 212.6 205 58.5
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.6e-52 209.1 166 62.7
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 1.0e-51 207.2 169 58.0
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 1.4e-50 203.4 139 70.5
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 9.3e-50 200.7 190 54.2
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 2.3e-48 196.1 165 57.0
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 3.9e-48 195.3 161 60.9
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 5.7e-47 191.4 137 63.5
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 5.7e-47 191.4 163 55.8
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 7.4e-47 191.0 166 54.8
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 9.7e-47 190.7 162 52.5
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 1.3e-46 190.3 161 59.0
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 2.8e-46 189.1 122 77.0
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 4.8e-46 188.3 165 53.3
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 6.3e-46 188.0 165 53.3
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 6.3e-46 188.0 165 53.3
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 6.3e-46 188.0 165 53.3
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 6.3e-46 188.0 136 66.2
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 8.2e-46 187.6 174 58.0
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.1e-45 187.2 157 55.4
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.1e-45 187.2 163 54.6
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.1e-45 187.2 128 69.5
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 1.8e-45 186.4 118 74.6
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.1e-45 185.7 167 52.7
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 5.3e-45 184.9 124 73.4
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 5.3e-45 184.9 139 62.6
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 9.0e-45 184.1 167 52.7
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 2.0e-44 183.0 150 55.3
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 2.0e-44 183.0 165 52.1
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 2.6e-44 182.6 137 60.6
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 2.6e-44 182.6 126 66.7
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 4.5e-44 181.8 125 70.4
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.7e-44 181.0 167 52.7
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.3e-43 180.3 167 52.1
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 1.1e-42 177.2 116 74.1
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 1.6e-41 173.3 137 56.2
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 1.0e-40 170.6 135 64.4
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 1.4e-40 170.2 116 71.6
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.4e-40 170.2 165 47.3
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 6.3e-38 161.4 116 70.7
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 2.4e-37 159.5 123 62.6
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 3.2e-34 149.1 160 50.0
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 9.4e-34 147.5 163 47.2
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 4.7e-33 145.2 117 60.7
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.0e-32 142.5 154 48.1
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 5.7e-31 138.3 88 73.9
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 3.7e-30 135.6 118 55.9
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 8.2e-30 134.4 163 42.9
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 1.4e-29 133.7 92 66.3
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 7.0e-29 131.3 125 57.6
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 7.7e-28 127.9 112 60.7
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 2.9e-27 125.9 139 46.8
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 6.5e-27 124.8 122 53.3
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 2.1e-25 119.8 75 74.7
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 8.8e-24 114.4 163 45.4
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 3.3e-23 112.5 118 44.1
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 7.5e-23 111.3 71 74.6
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 1.4e-21 107.1 84 65.5
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.7e-20 101.3 144 38.9
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 2.2e-19 99.8 75 57.3
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 2.2e-19 99.8 75 57.3
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.9e-19 99.4 92 52.2
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 1.9e-18 96.7 164 36.0
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 8.0e-17 91.3 71 54.9
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 1.2e-15 87.4 45 77.8
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.7e-15 85.1 99 44.4
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 3.7e-14 82.4 163 38.0
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 1.7e-11 73.6 69 58.0
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 5.0e-11 72.0 59 57.6
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 8.5e-11 71.2 75 48.0
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.5e-10 69.7 50 76.0
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 3.2e-10 69.3 54 64.8
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 5.5e-10 68.6 49 69.4
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 5.5e-10 68.6 49 69.4
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 1.2e-09 67.4 54 63.0
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 2.1e-09 66.6 58 50.0
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.2e-06 56.6 40 67.5


User provided reference genes

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