Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g035880 Solanum pennellii HOM05D002564 ORTHO05D011154 8.6e-63 243.4 119 100.0
Solyc01g090110.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 7.1e-33 144.1 121 61.2
Sopen01g035900 Solanum pennellii HOM05D002564 ORTHO05D011154 1.6e-32 142.9 121 60.3
Sopen01g035790 Solanum pennellii HOM05D002564 ORTHO05D011154 7.4e-30 134.0 109 62.4
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 1.3e-29 133.3 110 59.1
Solyc01g057510.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 1.6e-29 132.9 110 59.1
Nitab4.5_0003596g0040 Nicotiana tabacum HOM05D002564 ORTHO05D011154 3.7e-29 131.7 121 56.2
Solyc03g113825.1 Solanum lycopersicum HOM05D002564 ORTHO05D011154 4.8e-29 131.3 109 60.6
CAN.G1497.4 Capsicum annuum HOM05D002564 ORTHO05D011154 1.1e-28 130.2 108 61.1
Solyc01g089940.1 Solanum lycopersicum HOM05D002564 ORTHO05D011154 1.1e-28 130.2 106 61.3
Nitab4.5_0000563g0280 Nicotiana tabacum HOM05D002564 ORTHO05D011154 3.1e-28 128.6 121 54.5
Sopen01g035890 Solanum pennellii HOM05D002564 ORTHO05D011154 1.1e-25 120.2 121 51.2
PGSC0003DMG400036059 Solanum tuberosum HOM05D002564 ORTHO05D011154 1.4e-25 119.8 110 55.5
Solyc01g090010.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 2.5e-25 119.0 111 51.4
Sopen01g035870 Solanum pennellii HOM05D002564 ORTHO05D011154 3.2e-25 118.6 106 59.4
Solyc01g090070.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 5.5e-25 117.9 121 50.4
Solyc01g090030.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 2.1e-24 115.9 106 58.5
Solyc01g090080.3 Solanum lycopersicum HOM05D002564 ORTHO05D011154 1.0e-23 113.6 121 53.7
CAN.G1497.3 Capsicum annuum HOM05D002564 ORTHO05D011154 9.7e-22 107.1 114 50.0
Sopen01g035860 Solanum pennellii HOM05D002564 ORTHO05D011154 9.7e-22 107.1 102 50.0
Solyc01g089920.3 Solanum lycopersicum HOM05D002564 ORTHO05D011154 1.4e-20 103.2 112 47.3
CAN.G1585.16 Capsicum annuum HOM05D002564 ORTHO05D011154 2.0e-19 99.4 109 45.9
CAN.G1585.17 Capsicum annuum HOM05D002564 ORTHO05D011154 4.5e-19 98.2 110 43.6
PGSC0003DMG400011987 Solanum tuberosum HOM05D002564 ORTHO05D011154 1.0e-18 97.1 111 45.9
PGSC0003DMG400029184 Solanum tuberosum HOM05D002564 ORTHO05D396153 1.9e-17 92.8 91 51.6
Sopen01g035770 Solanum pennellii HOM05D002564 ORTHO05D011154 3.2e-17 92.0 101 45.5
Solyc01g090000.1 Solanum lycopersicum HOM05D002564 ORTHO05D011154 9.4e-17 90.5 110 39.1
Solyc01g090020.3 Solanum lycopersicum HOM05D002564 ORTHO05D011154 3.1e-12 75.5 87 48.3
TAR629G3463 Trochodendron aralioides HOM05D002564 ORTHO05D003945 3.4e-11 72.0 102 35.3
Aa31sc58G60 Aethionema arabicum HOM05D002564 ORTHO05D003945 4.5e-11 71.6 95 36.8
CANSAT21G2002 Cannabis sativa HOM05D002564 ORTHO05D003945 4.5e-11 71.6 101 34.7
CARHR174270 Cardamine hirsuta HOM05D002564 ORTHO05D003945 7.7e-11 70.9 101 33.7
Oeu017210.1 Olea europaea HOM05D002564 ORTHO05D003945 1.0e-10 70.5 96 36.5
TWI60G0953 Tripterygium wilfordii HOM05D002564 ORTHO05D003945 1.0e-10 70.5 99 35.4
Duzib205G0006 Durio zibethinus HOM05D002564 ORTHO05D003945 1.3e-10 70.1 96 37.5
Rhsim07G0118600 Rhododendron simsii HOM05D002564 ORTHO05D003945 1.3e-10 70.1 92 38.0
ClCG09G012780 Citrullus lanatus HOM05D002564 ORTHO05D003945 1.7e-10 69.7 99 35.4
ClCG09G012790 Citrullus lanatus HOM05D002564 ORTHO05D003945 1.7e-10 69.7 99 35.4
Psat4g075160 Pisum sativum HOM05D002564 ORTHO05D003945 2.2e-10 69.3 92 35.9
Lj8A275T73 Lonicera japonica HOM05D002564 ORTHO05D003945 2.9e-10 68.9 96 35.4
THA.LOC104806682 Tarenaya hassleriana HOM05D002564 ORTHO05D003945 2.9e-10 68.9 93 36.6
AL7G37010 Arabidopsis lyrata HOM05D002564 ORTHO05D003945 3.8e-10 68.6 99 38.4
AL8G10960 Arabidopsis lyrata HOM05D002564 ORTHO05D003945 3.8e-10 68.6 95 35.8
CAN.G761.18 Capsicum annuum HOM05D002564 ORTHO05D003945 3.8e-10 68.6 93 35.5
Gohir.A12G213700 Gossypium hirsutum HOM05D002564 ORTHO05D003945 3.8e-10 68.6 95 34.7
Nitab4.5_0000185g0160 Nicotiana tabacum HOM05D002564 ORTHO05D003945 3.8e-10 68.6 114 29.8
MELO3C003331.2 Cucumis melo HOM05D002564 ORTHO05D003945 5.0e-10 68.2 92 37.0
TWI15G0629 Tripterygium wilfordii HOM05D002564 ORTHO05D003945 5.0e-10 68.2 99 34.3
AT5G47120 Arabidopsis thaliana HOM05D002564 ORTHO05D003945 6.5e-10 67.8 95 34.7
MELO3C003332.2 Cucumis melo HOM05D002564 ORTHO05D003945 6.5e-10 67.8 99 34.3
CsaV3_3G049840 Cucumis sativus L. HOM05D002564 ORTHO05D003945 6.5e-10 67.8 92 35.9
CsaV3_3G049850 Cucumis sativus L. HOM05D002564 ORTHO05D003945 6.5e-10 67.8 99 34.3
Duzib084G1389 Durio zibethinus HOM05D002564 ORTHO05D003945 6.5e-10 67.8 92 35.9
Thhalv10001130m.g Eutrema salsugineum HOM05D002564 ORTHO05D003945 6.5e-10 67.8 101 32.7
Lj2C228T1 Lonicera japonica HOM05D002564 ORTHO05D003945 6.5e-10 67.8 96 34.4
SalBow5G2822 Salvia bowleyana HOM05D002564 ORTHO05D035172 6.5e-10 67.8 103 35.9
Sed0004432 Sechium edule HOM05D002564 ORTHO05D003945 6.5e-10 67.8 92 37.0
Sopen08g026490 Solanum pennellii HOM05D002564 ORTHO05D003945 6.5e-10 67.8 93 35.5
MD06G1048300 Malus domestica HOM05D002564 ORTHO05D003945 8.5e-10 67.4 98 33.7
Sc22g0001110 Simmondsia chinensis HOM05D002564 ORTHO05D003945 8.5e-10 67.4 92 33.7
BcaC03g16944 Brassica carinata HOM05D002564 ORTHO05D003945 1.1e-09 67.0 95 35.8
A02p30870 Brassica napus HOM05D002564 ORTHO05D003945 1.1e-09 67.0 95 34.7
Oeu054279.1 Olea europaea HOM05D002564 ORTHO05D003945 1.1e-09 67.0 93 34.4
Sed0002752 Sechium edule HOM05D002564 ORTHO05D003945 1.1e-09 67.0 92 35.9
THA.LOC104798354 Tarenaya hassleriana HOM05D002564 ORTHO05D003945 1.1e-09 67.0 93 35.5
A09p22870 Brassica napus HOM05D002564 ORTHO05D003945 1.4e-09 66.6 95 34.7
BraA09t37889Z Brassica rapa HOM05D002564 ORTHO05D003945 1.4e-09 66.6 95 34.7
HanXRQChr03g0089811 Helianthus annuus HOM05D002564 ORTHO05D003945 1.4e-09 66.6 102 31.4
Nitab4.5_0006594g0040 Nicotiana tabacum HOM05D002564 ORTHO05D003945 1.4e-09 66.6 103 32.0
RcHm_v2.0_Chr7g0205291 Rosa chinensis HOM05D002564 ORTHO05D003945 1.4e-09 66.6 92 37.0
AL7G37020 Arabidopsis lyrata HOM05D002564 ORTHO05D003945 1.9e-09 66.2 102 32.4
BcaB07g30791 Brassica carinata HOM05D002564 ORTHO05D003945 1.9e-09 66.2 95 34.7
HanXRQChr13g0418211 Helianthus annuus HOM05D002564 ORTHO05D003945 1.9e-09 66.2 96 33.3
PGSC0003DMG400026250 Solanum tuberosum HOM05D002564 ORTHO05D003945 1.9e-09 66.2 93 34.4
BcaC04g21644 Brassica carinata HOM05D002564 ORTHO05D003945 2.5e-09 65.9 95 33.7
C02p48480 Brassica napus HOM05D002564 ORTHO05D003945 2.5e-09 65.9 95 34.7
BolC9t55809H Brassica oleracea HOM05D002564 ORTHO05D003945 2.5e-09 65.9 95 33.7
Cc08_g11460 Coffea canephora HOM05D002564 ORTHO05D003945 2.5e-09 65.9 93 34.4
Nn1g00814 Nelumbo nucifera HOM05D002564 ORTHO05D003945 2.5e-09 65.9 100 34.0
Rhsim07G0118800 Rhododendron simsii HOM05D002564 ORTHO05D003945 2.5e-09 65.9 92 37.0
Sp2g11930 Schrenkiella parvula HOM05D002564 ORTHO05D003945 2.5e-09 65.9 95 34.7
C09p29450 Brassica napus HOM05D002564 ORTHO05D003945 3.2e-09 65.5 95 33.7
Carub.0007s2380 Capsella rubella HOM05D002564 ORTHO05D003945 3.2e-09 65.5 97 37.1
Haze_07974 Corylus avellana HOM05D002564 ORTHO05D003945 3.2e-09 65.5 99 33.3
Gohir.A08G165400 Gossypium hirsutum HOM05D002564 ORTHO05D003945 3.2e-09 65.5 95 34.7
Peaxi162Scf00102g00836 Petunia axillaris HOM05D002564 ORTHO05D003945 3.2e-09 65.5 108 32.4
CARHR224300 Cardamine hirsuta HOM05D002564 ORTHO05D003945 4.2e-09 65.1 97 34.0
Gohir.D12G216300 Gossypium hirsutum HOM05D002564 ORTHO05D003945 4.2e-09 65.1 95 33.7
Gorai.008G231700 Gossypium raimondii HOM05D002564 ORTHO05D003945 4.2e-09 65.1 95 33.7
Manes.02G044200 Manihot esculenta HOM05D002564 ORTHO05D003945 4.2e-09 65.1 99 34.3
VMungo0251G2763 Vigna mungo HOM05D002564 ORTHO05D003945 4.2e-09 65.1 92 33.7
CSS0020501 Camellia sinensis var. sinensis HOM05D002564 ORTHO05D003945 5.5e-09 64.7 102 31.4
CiPaw.12G047300 Carya illinoinensis HOM05D002564 ORTHO05D003945 5.5e-09 64.7 99 33.3
Glyma.05G064700 Glycine max HOM05D002564 ORTHO05D003945 5.5e-09 64.7 92 34.8
Gohir.D08G184100 Gossypium hirsutum HOM05D002564 ORTHO05D003945 5.5e-09 64.7 95 33.7
Gorai.004G193400 Gossypium raimondii HOM05D002564 ORTHO05D003945 5.5e-09 64.7 95 33.7
QL12p009056 Quercus lobata HOM05D002564 ORTHO05D003945 5.5e-09 64.7 89 36.0
Thecc.03G242800 Theobroma cacao HOM05D002564 ORTHO05D003945 5.5e-09 64.7 95 32.6
arahy.Tifrunner.gnm1.ann1.0MYH4H Arachis hypogaea HOM05D002564 ORTHO05D003945 9.4e-09 63.9 99 32.3
arahy.Tifrunner.gnm1.ann1.QND09G Arachis hypogaea HOM05D002564 ORTHO05D003945 9.4e-09 63.9 99 32.3
Glyma.17G146500 Glycine max HOM05D002564 ORTHO05D003945 9.4e-09 63.9 95 32.6
MD04G1051800 Malus domestica HOM05D002564 ORTHO05D003945 9.4e-09 63.9 98 32.7
PSO063G6369 Papaver somniferum HOM05D002564 ORTHO05D003945 9.4e-09 63.9 104 30.8
FAN13G1850 Fragaria x ananassa HOM05D002564 ORTHO05D003945 1.2e-08 63.5 92 35.9
Nn6g33792 Nelumbo nucifera HOM05D002564 ORTHO05D003945 1.2e-08 63.5 101 32.7
PSO782G2969 Papaver somniferum HOM05D002564 ORTHO05D003945 1.2e-08 63.5 104 30.8
Cfa012672 Carpinus fangiana HOM05D002564 ORTHO05D003945 1.6e-08 63.2 92 34.8
Nitab4.5_0000500g0100 Nicotiana tabacum HOM05D002564 ORTHO05D003945 1.6e-08 63.2 93 33.3
TAR375G0233 Trochodendron aralioides HOM05D002564 ORTHO05D003945 2.1e-08 62.8 99 30.3
MSTRG.13775 Avicennia marina HOM05D002564 ORTHO05D003945 2.7e-08 62.4 93 33.3
CiPaw.11G069700 Carya illinoinensis HOM05D002564 ORTHO05D003945 2.7e-08 62.4 99 33.3
ECA240G1580 Erigeron canadensis HOM05D002564 ORTHO05D003945 2.7e-08 62.4 107 29.9
FvH4_5g20220 Fragaria vesca HOM05D002564 ORTHO05D003945 2.7e-08 62.4 92 34.8
FAN18G0105 Fragaria x ananassa HOM05D002564 ORTHO05D003945 2.7e-08 62.4 92 34.8
Nitab4.5_0007628g0040 Nicotiana tabacum HOM05D002564 ORTHO05D003945 2.7e-08 62.4 93 34.4
Prupe.5G058500 Prunus persica HOM05D002564 ORTHO05D003945 2.7e-08 62.4 92 34.8
PGR042G0532 Punica granatum HOM05D002564 ORTHO05D003945 2.7e-08 62.4 102 30.4
Gohir.D11G027400 Gossypium hirsutum HOM05D002564 ORTHO05D003945 3.6e-08 62.0 92 33.7
Gorai.007G029900 Gossypium raimondii HOM05D002564 ORTHO05D003945 3.6e-08 62.0 92 33.7
Peaxi162Scf00446g00018 Petunia axillaris HOM05D002564 ORTHO05D003945 3.6e-08 62.0 93 33.3
Lsat_1_v5_gn_6_94980 Lactuca sativa HOM05D002564 ORTHO05D003945 4.7e-08 61.6 99 31.3
Manes.01G087400 Manihot esculenta HOM05D002564 ORTHO05D003945 4.7e-08 61.6 99 33.3
SGA_v2.0_scaffold6G03164 Striga asiatica HOM05D002564 ORTHO05D003945 4.7e-08 61.6 93 31.2
vmacro00044 Vaccinium macrocarpon HOM05D002564 ORTHO05D003945 4.7e-08 61.6 88 33.0
CDE04G2711 Ceratophyllum demersum HOM05D002564 ORTHO05D003945 6.1e-08 61.2 102 30.4
Gohir.A03G004800 Gossypium hirsutum HOM05D002564 ORTHO05D003945 6.1e-08 61.2 92 32.6
Carub.0008s0063 Capsella rubella HOM05D002564 ORTHO05D003945 7.9e-08 60.8 95 32.6
Lalb_Chr16g0379371 Lupinus albus HOM05D002564 ORTHO05D003945 7.9e-08 60.8 111 30.6
CDE12G0326 Ceratophyllum demersum HOM05D002564 ORTHO05D003945 1.0e-07 60.5 99 31.3
Hund11323 Selenicereus undatus HOM05D002564 ORTHO05D003945 1.0e-07 60.5 93 32.3
TPR.G31430 Trifolium pratense HOM05D002564 ORTHO05D003945 1.0e-07 60.5 92 35.9
Zm00001eb230820 Zea mays HOM05D002564 ORTHO05D003945 1.0e-07 60.5 109 30.3
Aqoxy3G02682 Aquilegia oxysepala HOM05D002564 ORTHO05D003945 1.4e-07 60.1 99 30.3
Cpa.g.sc89.3 Carica papaya HOM05D002564 ORTHO05D003945 1.4e-07 60.1 92 32.6
Sabra03G0053400 Salix brachista HOM05D002564 ORTHO05D003945 1.4e-07 60.1 99 31.3
Actinidia25904 Actinidia chinensis HOM05D002564 ORTHO05D003945 1.8e-07 59.7 90 31.1
Aa31LG6G330 Aethionema arabicum HOM05D002564 ORTHO05D003945 1.8e-07 59.7 100 36.0
Hma1.2p1_3142F.1_g333090 Hydrangea macrophylla HOM05D002564 ORTHO05D003945 1.8e-07 59.7 102 31.4
Lj4g0000920 Lotus japonicus HOM05D002564 ORTHO05D003945 1.8e-07 59.7 92 33.7
Lalb_Chr09g0324201 Lupinus albus HOM05D002564 ORTHO05D003945 2.3e-07 59.3 111 29.7
Psat2g176040 Pisum sativum HOM05D002564 ORTHO05D003945 2.3e-07 59.3 92 35.9
SalBow1G5297 Salvia bowleyana HOM05D002564 ORTHO05D003945 2.3e-07 59.3 99 31.3
SalBow1G6888 Salvia bowleyana HOM05D002564 ORTHO05D003945 2.3e-07 59.3 99 31.3
TAR004G0001 Trochodendron aralioides HOM05D002564 ORTHO05D003945 2.3e-07 59.3 99 30.3
unitig_22.g5495 Utricularia gibba HOM05D002564 ORTHO05D003945 2.3e-07 59.3 104 29.8
BraA02t08100Z Brassica rapa HOM05D002564 ORTHO05D003945 3.0e-07 58.9 103 32.0
CSS0038540 Camellia sinensis var. sinensis HOM05D002564 ORTHO05D112551 3.0e-07 58.9 76 36.8
CSS0039868 Camellia sinensis var. sinensis HOM05D002564 ORTHO05D112616 3.0e-07 58.9 76 36.8
Ciclev10021901m.g Citrus clementina HOM05D002564 ORTHO05D003945 3.0e-07 58.9 89 33.7
Duzib068G0289 Durio zibethinus HOM05D002564 ORTHO05D003945 3.0e-07 58.9 95 32.6
Gohir.A11G028900 Gossypium hirsutum HOM05D002564 ORTHO05D003945 3.0e-07 58.9 95 31.6
Ca_24608_v3 Cicer arietinum L. HOM05D002564 ORTHO05D003945 3.9e-07 58.5 92 34.8
COL.COLO4_07510 Corchorus olitorius HOM05D002564 ORTHO05D003945 3.9e-07 58.5 100 32.0
Zm00001eb208690 Zea mays HOM05D002564 ORTHO05D003945 3.9e-07 58.5 99 32.3
TAR374G0594 Trochodendron aralioides HOM05D002564 ORTHO05D003945 6.7e-07 57.8 99 29.3
EL10Ac5g12286 Beta vulgaris HOM05D002564 ORTHO05D003945 8.8e-07 57.4 101 28.7
Potri.003G082700 Populus trichocarpa HOM05D002564 ORTHO05D003945 8.8e-07 57.4 92 32.6
AUR62007154 Chenopodium quinoa HOM05D002564 ORTHO05D003945 1.5e-06 56.6 92 31.5
AUR62018857 Chenopodium quinoa HOM05D002564 ORTHO05D003945 2.0e-06 56.2 92 31.5
Migut.E00823 Erythranthe guttata HOM05D002564 ORTHO05D003945 2.0e-06 56.2 105 26.7
Medtr5g013340 Medicago truncatula HOM05D002564 ORTHO05D003945 2.0e-06 56.2 99 31.3
Phvul.002G001400 Phaseolus vulgaris HOM05D002564 ORTHO05D003945 2.0e-06 56.2 111 30.6
Sabra01G0121500 Salix brachista HOM05D002564 ORTHO05D003945 2.0e-06 56.2 101 27.7
Glyma.01G205200 Glycine max HOM05D002564 ORTHO05D003945 2.6e-06 55.8 92 34.8
Phvul.003G224400 Phaseolus vulgaris HOM05D002564 ORTHO05D003945 2.6e-06 55.8 92 30.4
arahy.Tifrunner.gnm1.ann1.2KFK0B Arachis hypogaea HOM05D002564 ORTHO05D003945 4.4e-06 55.1 105 30.5
arahy.Tifrunner.gnm1.ann1.68ECIB Arachis hypogaea HOM05D002564 ORTHO05D003945 4.4e-06 55.1 105 30.5
Potri.001G151800 Populus trichocarpa HOM05D002564 ORTHO05D003945 4.4e-06 55.1 92 31.5
FAN13G0033 Fragaria x ananassa HOM05D002564 ORTHO05D003945 7.4e-06 54.3 72 37.5


User provided reference genes

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