Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g035870 Solanum pennellii HOM05D002564 ORTHO05D011154 6.2e-123 444.1 222 100.0
Solyc01g090030.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 1.2e-113 413.3 250 86.4
Sopen01g035790 Solanum pennellii HOM05D002564 ORTHO05D011154 8.5e-88 327.4 212 78.3
Solyc03g113825.1 Solanum lycopersicum HOM05D002564 ORTHO05D011154 7.5e-76 287.7 218 69.3
Solyc01g089940.1 Solanum lycopersicum HOM05D002564 ORTHO05D011154 2.1e-54 216.5 176 66.5
Sopen01g035900 Solanum pennellii HOM05D002564 ORTHO05D011154 4.7e-46 188.7 237 46.0
Solyc01g090080.3 Solanum lycopersicum HOM05D002564 ORTHO05D011154 6.2e-46 188.3 237 46.0
Solyc01g090110.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 7.5e-44 181.4 231 47.2
Solyc01g057510.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 9.8e-44 181.0 231 47.6
Nitab4.5_0000563g0280 Nicotiana tabacum HOM05D002564 ORTHO05D011154 7.8e-41 171.4 231 44.2
Nitab4.5_0003596g0040 Nicotiana tabacum HOM05D002564 ORTHO05D011154 3.0e-40 169.5 238 43.7
Solyc01g090010.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 5.0e-40 168.7 227 42.7
CAN.G1497.4 Capsicum annuum HOM05D002564 ORTHO05D011154 1.2e-38 164.1 239 42.3
CAN.G1497.3 Capsicum annuum HOM05D002564 ORTHO05D011154 6.2e-38 161.8 229 43.2
PGSC0003DMG400011982 Solanum tuberosum HOM05D002564 ORTHO05D011154 1.8e-37 160.2 212 47.6
PGSC0003DMG400036059 Solanum tuberosum HOM05D002564 ORTHO05D011154 2.3e-37 159.8 229 42.8
Solyc01g090070.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 2.2e-35 153.3 229 42.4
Sopen01g035890 Solanum pennellii HOM05D002564 ORTHO05D011154 6.4e-35 151.8 229 41.9
PGSC0003DMG400011987 Solanum tuberosum HOM05D002564 ORTHO05D011154 5.2e-29 132.1 217 38.2
Solyc01g090000.1 Solanum lycopersicum HOM05D002564 ORTHO05D011154 1.5e-28 130.6 223 34.1
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 6.4e-27 125.2 189 44.4
CAN.G1585.17 Capsicum annuum HOM05D002564 ORTHO05D011154 1.1e-26 124.4 236 33.9
Solyc01g089920.3 Solanum lycopersicum HOM05D002564 ORTHO05D011154 3.2e-26 122.9 228 36.4
PGSC0003DMG400011988 Solanum tuberosum HOM05D002564 ORTHO05D011154 1.0e-24 117.9 212 38.2
Sopen01g035880 Solanum pennellii HOM05D002564 ORTHO05D011154 2.3e-24 116.7 106 59.4
Solyc01g090100.3 Solanum lycopersicum HOM05D002564 ORTHO05D011154 9.6e-23 111.3 231 33.8
Sopen01g035770 Solanum pennellii HOM05D002564 ORTHO05D011154 3.6e-22 109.4 233 33.5
CAN.G1585.16 Capsicum annuum HOM05D002564 ORTHO05D011154 4.4e-20 102.4 230 32.6
Solyc01g090090.3 Solanum lycopersicum HOM05D002564 ORTHO05D011154 4.2e-18 95.9 217 33.6
Sopen01g035860 Solanum pennellii HOM05D002564 ORTHO05D011154 2.7e-17 93.2 100 52.0
PGSC0003DMG400039124 Solanum tuberosum HOM05D002564 ORTHO05D011154 1.0e-16 91.3 208 31.7
PGSC0003DMG400029184 Solanum tuberosum HOM05D002564 ORTHO05D396153 8.1e-14 81.6 81 54.3
PGSC0003DMG400011986 Solanum tuberosum HOM05D002564 ORTHO05D011154 4.0e-13 79.3 137 36.5
TAR629G3463 Trochodendron aralioides HOM05D002564 ORTHO05D003945 1.2e-12 77.8 219 26.0
Rhsim07G0118600 Rhododendron simsii HOM05D002564 ORTHO05D003945 4.5e-12 75.9 242 25.2
SalBow5G2822 Salvia bowleyana HOM05D002564 ORTHO05D035172 4.5e-12 75.9 222 27.5
CsaV3_3G049850 Cucumis sativus L. HOM05D002564 ORTHO05D003945 5.8e-12 75.5 243 24.7
Solyc03g113840.3 Solanum lycopersicum HOM05D003119 ORTHO05D003559 1.3e-11 74.3 75 49.3
MELO3C003331.2 Cucumis melo HOM05D002564 ORTHO05D003945 2.2e-11 73.6 243 24.7
Cpa.g.sc89.3 Carica papaya HOM05D002564 ORTHO05D003945 2.9e-11 73.2 238 23.9
TWI60G0953 Tripterygium wilfordii HOM05D002564 ORTHO05D003945 4.9e-11 72.4 242 24.4
Rhsim07G0118800 Rhododendron simsii HOM05D002564 ORTHO05D003945 8.4e-11 71.6 242 24.8
Lj2C228T1 Lonicera japonica HOM05D002564 ORTHO05D003945 1.4e-10 70.9 239 25.1
Aqoxy3G02682 Aquilegia oxysepala HOM05D002564 ORTHO05D003945 2.4e-10 70.1 227 22.5
PSO782G2969 Papaver somniferum HOM05D002564 ORTHO05D003945 2.4e-10 70.1 227 22.0
Cc08_g11460 Coffea canephora HOM05D002564 ORTHO05D003945 3.2e-10 69.7 226 24.3
TWI15G0629 Tripterygium wilfordii HOM05D002564 ORTHO05D003945 3.2e-10 69.7 242 24.0
PSO063G6369 Papaver somniferum HOM05D002564 ORTHO05D003945 4.2e-10 69.3 227 22.0
RcHm_v2.0_Chr7g0205291 Rosa chinensis HOM05D002564 ORTHO05D003945 4.2e-10 69.3 219 23.7
ClCG09G012790 Citrullus lanatus HOM05D002564 ORTHO05D003945 5.4e-10 68.9 243 23.0
TAR375G0233 Trochodendron aralioides HOM05D002564 ORTHO05D003945 7.1e-10 68.6 223 23.8
Nitab4.5_0000185g0160 Nicotiana tabacum HOM05D002564 ORTHO05D003945 9.3e-10 68.2 232 23.3
Aa31sc58G60 Aethionema arabicum HOM05D002564 ORTHO05D003945 1.2e-09 67.8 245 23.7
CSS0020501 Camellia sinensis var. sinensis HOM05D002564 ORTHO05D003945 1.2e-09 67.8 219 25.1
TAR004G0001 Trochodendron aralioides HOM05D002564 ORTHO05D003945 1.2e-09 67.8 223 23.8
A02p30870 Brassica napus HOM05D002564 ORTHO05D003945 1.6e-09 67.4 232 23.3
CANSAT21G2002 Cannabis sativa HOM05D002564 ORTHO05D003945 2.7e-09 66.6 245 22.0
FvH4_5g20220 Fragaria vesca HOM05D002564 ORTHO05D003945 2.7e-09 66.6 219 23.7
FAN18G0105 Fragaria x ananassa HOM05D002564 ORTHO05D003945 2.7e-09 66.6 219 23.7
Nitab4.5_0000500g0100 Nicotiana tabacum HOM05D002564 ORTHO05D003945 2.7e-09 66.6 212 26.4
TAR374G0594 Trochodendron aralioides HOM05D002564 ORTHO05D003945 2.7e-09 66.6 223 23.3
Lj8A275T73 Lonicera japonica HOM05D002564 ORTHO05D003945 3.5e-09 66.2 117 33.3
Nitab4.5_0006594g0040 Nicotiana tabacum HOM05D002564 ORTHO05D003945 3.5e-09 66.2 212 24.1
Haze_07974 Corylus avellana HOM05D002564 ORTHO05D003945 4.6e-09 65.9 133 30.8
Glyma.05G064700 Glycine max HOM05D002564 ORTHO05D003945 4.6e-09 65.9 223 23.3
MD06G1048300 Malus domestica HOM05D002564 ORTHO05D003945 4.6e-09 65.9 243 21.0
Nn1g00814 Nelumbo nucifera HOM05D002564 ORTHO05D003945 4.6e-09 65.9 227 22.0
Peaxi162Scf00102g00836 Petunia axillaris HOM05D002564 ORTHO05D003945 4.6e-09 65.9 240 23.3
Potri.003G082700 Populus trichocarpa HOM05D002564 ORTHO05D003945 4.6e-09 65.9 227 24.7
BcaC03g16944 Brassica carinata HOM05D002564 ORTHO05D003945 6.0e-09 65.5 232 22.8
MD04G1051800 Malus domestica HOM05D002564 ORTHO05D003945 6.0e-09 65.5 243 22.6
Cfa012672 Carpinus fangiana HOM05D002564 ORTHO05D003945 7.9e-09 65.1 133 30.8
Migut.E00823 Erythranthe guttata HOM05D002564 ORTHO05D003945 7.9e-09 65.1 221 23.5
FAN13G1850 Fragaria x ananassa HOM05D002564 ORTHO05D003945 7.9e-09 65.1 219 23.3
PGSC0003DMG400042267 Solanum tuberosum HOM05D002564 ORTHO05D011154 7.9e-09 65.1 156 28.8
Thhalv10001130m.g Eutrema salsugineum HOM05D002564 ORTHO05D003945 1.0e-08 64.7 220 22.7
Peaxi162Scf00446g00018 Petunia axillaris HOM05D002564 ORTHO05D003945 1.0e-08 64.7 222 23.4
PGSC0003DMG400042136 Solanum tuberosum HOM05D002564 ORTHO05D398490 1.0e-08 64.7 159 28.3
SGA_v2.0_scaffold6G03164 Striga asiatica HOM05D002564 ORTHO05D003945 1.0e-08 64.7 223 22.9
C02p48480 Brassica napus HOM05D002564 ORTHO05D003945 1.3e-08 64.3 232 22.4
Ciclev10021901m.g Citrus clementina HOM05D002564 ORTHO05D003945 1.3e-08 64.3 237 23.6
Gohir.A12G213700 Gossypium hirsutum HOM05D002564 ORTHO05D003945 1.8e-08 63.9 225 23.6
Oeu017210.1 Olea europaea HOM05D002564 ORTHO05D003945 1.8e-08 63.9 117 33.3
Solyc01g090020.3 Solanum lycopersicum HOM05D002564 ORTHO05D011154 1.8e-08 63.9 81 46.9
PGSC0003DMG400045632 Solanum tuberosum HOM05D002564 ORTHO05D011154 2.3e-08 63.5 72 37.5
AL8G10960 Arabidopsis lyrata HOM05D002564 ORTHO05D003945 3.0e-08 63.2 220 22.3
AUR62007154 Chenopodium quinoa HOM05D002564 ORTHO05D003945 3.9e-08 62.8 120 31.7
Prupe.5G058500 Prunus persica HOM05D002564 ORTHO05D003945 3.9e-08 62.8 243 21.0
VMungo0251G2763 Vigna mungo HOM05D002564 ORTHO05D003945 3.9e-08 62.8 238 21.4
MSTRG.13775 Avicennia marina HOM05D002564 ORTHO05D003945 5.1e-08 62.4 227 24.2
Oeu054279.1 Olea europaea HOM05D002564 ORTHO05D003945 5.1e-08 62.4 116 31.9
SalBow1G5297 Salvia bowleyana HOM05D002564 ORTHO05D003945 5.1e-08 62.4 223 24.7
SalBow1G6888 Salvia bowleyana HOM05D002564 ORTHO05D003945 5.1e-08 62.4 223 24.7
TPR.G31430 Trifolium pratense HOM05D002564 ORTHO05D003945 5.1e-08 62.4 223 23.8
AT5G47120 Arabidopsis thaliana HOM05D002564 ORTHO05D003945 6.7e-08 62.0 220 21.8
A09p22870 Brassica napus HOM05D002564 ORTHO05D003945 6.7e-08 62.0 222 22.1
BraA09t37889Z Brassica rapa HOM05D002564 ORTHO05D003945 6.7e-08 62.0 222 22.1
Eucgr.E00365 Eucalyptus grandis HOM05D002564 ORTHO05D003945 6.7e-08 62.0 235 23.4
BcaB07g30791 Brassica carinata HOM05D002564 ORTHO05D003945 8.7e-08 61.6 222 22.1
BcaC04g21644 Brassica carinata HOM05D002564 ORTHO05D003945 8.7e-08 61.6 222 22.1
BolC9t55809H Brassica oleracea HOM05D002564 ORTHO05D003945 8.7e-08 61.6 222 22.1
AUR62018857 Chenopodium quinoa HOM05D002564 ORTHO05D003945 8.7e-08 61.6 120 30.8
Duzib068G0289 Durio zibethinus HOM05D002564 ORTHO05D003945 8.7e-08 61.6 238 21.8
Nn6g33792 Nelumbo nucifera HOM05D002564 ORTHO05D003945 8.7e-08 61.6 116 31.0
Psat2g176040 Pisum sativum HOM05D002564 ORTHO05D003945 8.7e-08 61.6 223 24.7
Hund11323 Selenicereus undatus HOM05D002564 ORTHO05D003945 8.7e-08 61.6 227 24.2
CARHR174270 Cardamine hirsuta HOM05D002564 ORTHO05D003945 1.1e-07 61.2 144 29.9
QL12p009056 Quercus lobata HOM05D002564 ORTHO05D003945 1.5e-07 60.8 219 23.3
Actinidia25904 Actinidia chinensis HOM05D002564 ORTHO05D003945 1.9e-07 60.5 222 24.3
C09p29450 Brassica napus HOM05D002564 ORTHO05D003945 1.9e-07 60.5 222 21.6
Nitab4.5_0007628g0040 Nicotiana tabacum HOM05D002564 ORTHO05D003945 1.9e-07 60.5 126 31.7
ATR0684G045 Amborella trichopoda HOM05D002564 ORTHO05D003945 3.3e-07 59.7 228 23.2
Sp2g11930 Schrenkiella parvula HOM05D002564 ORTHO05D003945 3.3e-07 59.7 207 22.2
PGSC0003DMG400028015 Solanum tuberosum HOM05D002564 ORTHO05D011154 3.3e-07 59.7 59 44.1
CAN.G761.18 Capsicum annuum HOM05D002564 ORTHO05D003945 4.3e-07 59.3 222 22.5
PGSC0003DMG400026250 Solanum tuberosum HOM05D002564 ORTHO05D003945 4.3e-07 59.3 222 23.4
BraA02t08100Z Brassica rapa HOM05D002564 ORTHO05D003945 5.6e-07 58.9 240 22.1
CiPaw.12G047300 Carya illinoinensis HOM05D002564 ORTHO05D003945 5.6e-07 58.9 240 20.8
Ca_24608_v3 Cicer arietinum L. HOM05D002564 ORTHO05D003945 7.4e-07 58.5 223 23.3
Atru.chr9.1224 Acer truncatum HOM05D002564 ORTHO05D003945 9.6e-07 58.2 217 22.1
Lalb_Chr09g0324201 Lupinus albus HOM05D002564 ORTHO05D003945 9.6e-07 58.2 117 30.8
vmacro00044 Vaccinium macrocarpon HOM05D002564 ORTHO05D003945 9.6e-07 58.2 193 25.9
CiPaw.11G069700 Carya illinoinensis HOM05D002564 ORTHO05D003945 1.3e-06 57.8 133 27.8
arahy.Tifrunner.gnm1.ann1.QND09G Arachis hypogaea HOM05D002564 ORTHO05D003945 1.6e-06 57.4 129 27.1
Sopen08g026490 Solanum pennellii HOM05D002564 ORTHO05D003945 1.6e-06 57.4 222 22.5
arahy.Tifrunner.gnm1.ann1.0MYH4H Arachis hypogaea HOM05D002564 ORTHO05D003945 2.1e-06 57.0 129 27.1
PGSC0003DMG400046680 Solanum tuberosum HOM05D002564 ORTHO05D011154 2.1e-06 57.0 67 44.8
Oeu037378.2 Olea europaea HOM05D002564 ORTHO05D003945 2.8e-06 56.6 188 25.5
Medtr5g013340 Medicago truncatula HOM05D002564 ORTHO05D003945 3.6e-06 56.2 233 22.3
Lj4g0000920 Lotus japonicus HOM05D002564 ORTHO05D003945 4.8e-06 55.8 227 22.0
Lalb_Chr16g0379371 Lupinus albus HOM05D002564 ORTHO05D003945 6.2e-06 55.5 117 29.1
CDE12G0326 Ceratophyllum demersum HOM05D002564 ORTHO05D003945 8.1e-06 55.1 223 22.4
Psat4g075160 Pisum sativum HOM05D002564 ORTHO05D003945 8.1e-06 55.1 241 20.7


User provided reference genes

Program Settings