Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g035810 Solanum pennellii HOM05D000051 ORTHO05D011342 3.1e-66 255.0 127 100.0
CAN.G1585.12 Capsicum annuum HOM05D000051 ORTHO05D011342 1.1e-47 193.4 127 78.0
PGSC0003DMG400031165 Solanum tuberosum HOM05D000051 ORTHO05D011342 3.0e-37 158.7 122 69.7
Peaxi162Scf00853g00215 Petunia axillaris HOM05D000051 ORTHO05D011342 1.9e-36 156.0 126 65.9
Peaxi162Scf00853g00317 Petunia axillaris HOM05D000051 ORTHO05D011342 2.8e-35 152.1 121 66.9
CAN.G1585.10 Capsicum annuum HOM05D000051 ORTHO05D011342 9.0e-34 147.1 116 67.2
Nitab4.5_0004837g0050 Nicotiana tabacum HOM05D000051 ORTHO05D000015 7.6e-33 144.1 122 63.1
PGSC0003DMG400008874 Solanum tuberosum HOM05D000051 ORTHO05D011342 1.7e-32 142.9 117 65.0
PGSC0003DMG400008873 Solanum tuberosum HOM05D000051 ORTHO05D011342 7.1e-31 137.5 117 62.4
Nitab4.5_0000692g0190 Nicotiana tabacum HOM05D000051 ORTHO05D011342 9.3e-31 137.1 121 61.2
Sopen09g004670 Solanum pennellii HOM05D000051 ORTHO05D011342 9.3e-31 137.1 122 59.8
Solyc09g009920.1 Solanum lycopersicum HOM05D000051 ORTHO05D000015 7.9e-30 134.0 117 60.7
CAN.G397.63 Capsicum annuum HOM05D000051 ORTHO05D000015 6.7e-29 131.0 113 65.5
Sopen01g035760 Solanum pennellii HOM05D000051 ORTHO05D011342 1.3e-27 126.7 80 77.5
Nitab4.5_0004837g0060 Nicotiana tabacum HOM05D000051 ORTHO05D011342 3.7e-27 125.2 96 68.8
Peaxi162Scf00404g00220 Petunia axillaris HOM05D000051 ORTHO05D011342 4.0e-26 121.7 123 56.9
Nitab4.5_0000692g0160 Nicotiana tabacum HOM05D000051 ORTHO05D011342 2.0e-25 119.4 122 57.4
PGSC0003DMG400030061 Solanum tuberosum HOM05D000051 ORTHO05D011342 2.9e-24 115.5 156 48.1
Nitab4.5_0019725g0010 Nicotiana tabacum HOM05D000051 ORTHO05D011342 1.2e-22 110.2 104 61.5
CAN.G1585.11 Capsicum annuum HOM05D000051 ORTHO05D011342 4.2e-15 85.1 56 75.0
TAR629G2966 Trochodendron aralioides HOM05D017481 ORTHO05D011342 3.6e-14 82.0 108 38.0
Hma1.2p1_2457F.1_g322490 Hydrangea macrophylla HOM05D000051 ORTHO05D000015 7.9e-14 80.9 118 40.7
Ciclev10022657m.g Citrus clementina HOM05D017481 ORTHO05D011342 1.8e-13 79.7 109 39.4
Ciclev10019792m.g Citrus clementina HOM05D000051 ORTHO05D000015 1.1e-12 77.0 112 34.8
TWI14G0414 Tripterygium wilfordii HOM05D000051 ORTHO05D000015 1.3e-11 73.6 108 37.0
Duzib138G1539 Durio zibethinus HOM05D000051 ORTHO05D011342 3.7e-11 72.0 114 36.0
Manes.05G056200 Manihot esculenta HOM05D000051 ORTHO05D000015 1.4e-10 70.1 82 37.8
Ciclev10010578m.g Citrus clementina HOM05D000051 ORTHO05D011342 2.4e-10 69.3 80 43.8
Rhsim10G0128900 Rhododendron simsii HOM05D000051 ORTHO05D011342 2.4e-10 69.3 84 42.9
COL.COLO4_12386 Corchorus olitorius HOM05D000051 ORTHO05D011342 3.1e-10 68.9 128 33.6
COL.COLO4_12387 Corchorus olitorius HOM05D000051 ORTHO05D000015 4.1e-10 68.6 119 37.8
Atru.chr12.1682 Acer truncatum HOM05D017481 ORTHO05D011342 5.3e-10 68.2 110 40.0
Atru.chr12.250 Acer truncatum HOM05D017481 ORTHO05D011342 5.3e-10 68.2 110 40.0
RcHm_v2.0_Chr5g0028401 Rosa chinensis HOM05D000051 ORTHO05D000015 2.6e-09 65.9 106 35.8
Atru.chr2.3248 Acer truncatum HOM05D000051 ORTHO05D000015 1.3e-08 63.5 110 38.2
Atru.chr10.1554 Acer truncatum HOM05D017481 ORTHO05D011342 2.9e-08 62.4 92 41.3
FvH4_3g17061 Fragaria vesca HOM05D000051 ORTHO05D000015 2.9e-08 62.4 106 34.9
Dinv18383 Davidia involucrata HOM05D000051 ORTHO05D008292 3.8e-08 62.0 94 37.2
FAN18G0789 Fragaria x ananassa HOM05D012937 ORTHO05D000015 3.8e-08 62.0 116 36.2
Nn3g18635 Nelumbo nucifera HOM05D000051 ORTHO05D000015 5.0e-08 61.6 111 33.3
Sc13g0005680 Simmondsia chinensis HOM05D000051 ORTHO05D000015 8.5e-08 60.8 122 32.8
FAN11G0701 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.9e-07 59.7 114 34.2
Lj3A51T16 Lonicera japonica HOM05D000051 ORTHO05D014235 1.9e-07 59.7 112 29.5
PSO541G5471 Papaver somniferum HOM05D000051 ORTHO05D000015 1.9e-07 59.7 101 35.6
AT3G26920 Arabidopsis thaliana HOM05D000051 ORTHO05D000015 2.5e-07 59.3 112 35.7
Duzib187G0942 Durio zibethinus HOM05D000051 ORTHO05D000015 3.2e-07 58.9 70 41.4
FvH4_3g17090 Fragaria vesca HOM05D000051 ORTHO05D000015 3.2e-07 58.9 71 39.4
FAN11G1423 Fragaria x ananassa HOM05D000051 ORTHO05D008292 3.2e-07 58.9 79 38.0
FAN11G1909 Fragaria x ananassa HOM05D000051 ORTHO05D000015 3.2e-07 58.9 71 39.4
FAN21G3599 Fragaria x ananassa HOM05D000051 ORTHO05D000015 3.2e-07 58.9 62 46.8
COL.COLO4_30125 Corchorus olitorius HOM05D000051 ORTHO05D000015 4.2e-07 58.5 118 35.6
Lj1A868G40 Lonicera japonica HOM05D000051 ORTHO05D000015 4.2e-07 58.5 100 37.0
RcHm_v2.0_Chr1g0363171 Rosa chinensis HOM05D000051 ORTHO05D000015 4.2e-07 58.5 120 31.7
Lj3A56G17 Lonicera japonica HOM05D000051 ORTHO05D014235 5.5e-07 58.2 112 28.6
DCAR_024431 Daucus carota HOM05D000051 ORTHO05D000015 9.4e-07 57.4 116 31.9
FAN13G0806 Fragaria x ananassa HOM05D012937 ORTHO05D000015 9.4e-07 57.4 96 36.5
FAN13G1655 Fragaria x ananassa HOM05D012937 ORTHO05D000015 9.4e-07 57.4 81 42.0
Nn3g18638 Nelumbo nucifera HOM05D000051 ORTHO05D000015 9.4e-07 57.4 112 33.0
Sc13g0005570 Simmondsia chinensis HOM05D000051 ORTHO05D000015 9.4e-07 57.4 96 34.4
PSO017G2530 Papaver somniferum HOM05D000051 ORTHO05D000015 1.2e-06 57.0 107 36.4
FAN25G1937 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.6e-06 56.6 67 40.3
PSO478G2955 Papaver somniferum HOM05D000051 ORTHO05D000015 1.6e-06 56.6 107 36.4
Dinv17489 Davidia involucrata HOM05D000051 ORTHO05D000015 2.1e-06 56.2 106 35.8
Migut.L00791 Erythranthe guttata HOM05D000051 ORTHO05D000015 2.1e-06 56.2 110 32.7
Lj3A67T9 Lonicera japonica HOM05D000051 ORTHO05D000015 2.1e-06 56.2 108 27.8
Migut.G00068 Erythranthe guttata HOM05D000051 ORTHO05D000015 2.7e-06 55.8 109 33.9
FvH4_6g07500 Fragaria vesca HOM05D000051 ORTHO05D000015 2.7e-06 55.8 77 37.7
FAN14G2385 Fragaria x ananassa HOM05D000051 ORTHO05D000015 2.7e-06 55.8 77 37.7
PSO832G0529 Papaver somniferum HOM05D000051 ORTHO05D009405 2.7e-06 55.8 78 43.6
MBI18_g32211_MAGBIO Magnolia biondii HOM05D000051 ORTHO05D000015 3.6e-06 55.5 72 41.7
MD03G1112300 Malus domestica HOM05D000051 ORTHO05D000015 3.6e-06 55.5 97 36.1
PSO063G6161 Papaver somniferum HOM05D000051 ORTHO05D000015 3.6e-06 55.5 103 35.9
RcHm_v2.0_Chr2g0115721 Rosa chinensis HOM05D000051 ORTHO05D000015 3.6e-06 55.5 92 38.0
RcHm_v2.0_Chr5g0028471 Rosa chinensis HOM05D000051 ORTHO05D000015 3.6e-06 55.5 111 34.2
FAN28G0582 Fragaria x ananassa HOM05D012937 ORTHO05D000015 4.7e-06 55.1 68 45.6
MD03G1255400 Malus domestica HOM05D000051 ORTHO05D000015 4.7e-06 55.1 112 33.9
Potri.011G121400 Populus trichocarpa HOM05D000051 ORTHO05D000015 4.7e-06 55.1 106 34.0
Thecc.07G045100 Theobroma cacao HOM05D000051 ORTHO05D000015 4.7e-06 55.1 97 35.1
Migut.M00541 Erythranthe guttata HOM05D000051 ORTHO05D000015 6.1e-06 54.7 107 32.7
FAN16G3673 Fragaria x ananassa HOM05D000051 ORTHO05D000015 6.1e-06 54.7 102 33.3
FAN25G3081 Fragaria x ananassa HOM05D000051 ORTHO05D000015 6.1e-06 54.7 64 43.8
PSO384G3668 Papaver somniferum HOM05D000051 ORTHO05D009405 6.1e-06 54.7 107 35.5
QL01p041783 Quercus lobata HOM05D000051 ORTHO05D000015 6.1e-06 54.7 90 37.8
Rhsim07G0063700 Rhododendron simsii HOM05D000051 ORTHO05D000015 6.1e-06 54.7 123 32.5
TAR624G0204 Trochodendron aralioides HOM05D001396 ORTHO05D000493 6.1e-06 54.7 116 32.8
FvH4_7g28040 Fragaria vesca HOM05D000051 ORTHO05D017957 7.9e-06 54.3 107 29.9
FAN10G3157 Fragaria x ananassa HOM05D000051 ORTHO05D000015 7.9e-06 54.3 107 30.8
RcHm_v2.0_Chr5g0028261 Rosa chinensis HOM05D000051 ORTHO05D000015 7.9e-06 54.3 64 45.3
Thecc.01G397700 Theobroma cacao HOM05D000051 ORTHO05D000015 7.9e-06 54.3 75 40.0


User provided reference genes

Program Settings