Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g035760 Solanum pennellii HOM05D000051 ORTHO05D011342 7.0e-119 430.6 217 100.0
PGSC0003DMG400031165 Solanum tuberosum HOM05D000051 ORTHO05D011342 1.5e-73 280.0 213 72.3
Peaxi162Scf00853g00215 Petunia axillaris HOM05D000051 ORTHO05D011342 2.2e-56 223.0 223 55.6
CAN.G1585.12 Capsicum annuum HOM05D000051 ORTHO05D011342 1.2e-49 200.7 216 54.2
Nitab4.5_0000692g0190 Nicotiana tabacum HOM05D000051 ORTHO05D011342 5.4e-47 191.8 217 50.7
Sopen09g004670 Solanum pennellii HOM05D000051 ORTHO05D011342 1.0e-45 187.6 216 48.1
Solyc09g009920.1 Solanum lycopersicum HOM05D000051 ORTHO05D000015 3.0e-45 186.0 216 47.7
PGSC0003DMG400008873 Solanum tuberosum HOM05D000051 ORTHO05D011342 6.7e-45 184.9 216 49.1
CAN.G397.63 Capsicum annuum HOM05D000051 ORTHO05D000015 1.9e-44 183.3 215 48.4
PGSC0003DMG400008874 Solanum tuberosum HOM05D000051 ORTHO05D011342 2.1e-43 179.9 220 47.7
PGSC0003DMG400030061 Solanum tuberosum HOM05D000051 ORTHO05D011342 2.0e-41 173.3 250 43.6
Nitab4.5_0004837g0050 Nicotiana tabacum HOM05D000051 ORTHO05D000015 9.6e-36 154.5 217 42.9
Peaxi162Scf00853g00317 Petunia axillaris HOM05D000051 ORTHO05D011342 1.6e-35 153.7 178 48.3
CAN.G1585.10 Capsicum annuum HOM05D000051 ORTHO05D011342 2.4e-34 149.8 162 51.9
Nitab4.5_0004837g0060 Nicotiana tabacum HOM05D000051 ORTHO05D011342 1.7e-32 143.7 115 63.5
Sopen01g035810 Solanum pennellii HOM05D000051 ORTHO05D011342 5.7e-28 128.6 80 77.5
Peaxi162Scf03039g00003 Petunia axillaris HOM05D000051 ORTHO05D011342 2.5e-23 113.2 134 51.5
Hma1.2p1_2457F.1_g322490 Hydrangea macrophylla HOM05D000051 ORTHO05D000015 2.3e-21 106.7 188 34.6
Nitab4.5_0000692g0160 Nicotiana tabacum HOM05D000051 ORTHO05D011342 3.7e-19 99.4 171 40.9
Peaxi162Scf00853g00214 Petunia axillaris HOM05D000051 ORTHO05D000015 4.8e-19 99.0 194 38.1
Peaxi162Scf00404g00220 Petunia axillaris HOM05D000051 ORTHO05D011342 2.4e-18 96.7 137 45.3
Rhsim04G0001300 Rhododendron simsii HOM05D000051 ORTHO05D000015 2.6e-17 93.2 187 34.8
Ciclev10010578m.g Citrus clementina HOM05D000051 ORTHO05D011342 1.0e-16 91.3 213 31.0
CAN.G1585.11 Capsicum annuum HOM05D000051 ORTHO05D011342 1.2e-14 84.3 87 49.4
Hma1.2p1_1609F.1_g293440 Hydrangea macrophylla HOM05D000051 ORTHO05D000015 2.1e-14 83.6 193 33.7
Thecc.01G397700 Theobroma cacao HOM05D000051 ORTHO05D000015 4.6e-14 82.4 187 28.3
MBI02_g15268_MAGBIO Magnolia biondii HOM05D000051 ORTHO05D000015 8.8e-13 78.2 199 32.2
TWI14G0414 Tripterygium wilfordii HOM05D000051 ORTHO05D000015 2.6e-12 76.6 200 30.5
COL.COLO4_12387 Corchorus olitorius HOM05D000051 ORTHO05D000015 5.7e-12 75.5 233 28.3
Medtr4g080590 Medicago truncatula HOM05D000051 ORTHO05D000015 5.7e-12 75.5 191 29.8
PSO017G6419 Papaver somniferum HOM05D000051 ORTHO05D000015 7.4e-12 75.1 185 31.9
Duzib138G1539 Durio zibethinus HOM05D000051 ORTHO05D011342 1.3e-11 74.3 220 26.8
Nn3g18635 Nelumbo nucifera HOM05D000051 ORTHO05D000015 2.2e-11 73.6 189 28.0
Ciclev10019792m.g Citrus clementina HOM05D000051 ORTHO05D000015 6.3e-11 72.0 195 26.7
Dinv18383 Davidia involucrata HOM05D000051 ORTHO05D008292 6.3e-11 72.0 211 27.0
PSO675G9174 Papaver somniferum HOM05D000051 ORTHO05D000015 6.3e-11 72.0 229 29.7
Sopen01g035800 Solanum pennellii HOM05D000051 ORTHO05D011342 6.3e-11 72.0 86 44.2
Actinidia05113 Actinidia chinensis HOM05D000051 ORTHO05D000015 1.4e-10 70.9 185 29.7
SGA_v2.0_scaffold16G07850 Striga asiatica HOM05D000312 ORTHO05D000221 1.8e-10 70.5 199 29.6
Atru.chr12.250 Acer truncatum HOM05D017481 ORTHO05D011342 2.4e-10 70.1 119 38.7
Actinidia30174 Actinidia chinensis HOM05D006853 ORTHO05D008906 4.1e-10 69.3 198 29.8
Ciclev10022657m.g Citrus clementina HOM05D017481 ORTHO05D011342 4.1e-10 69.3 120 35.8
GSVIVG01038076001 Vitis vinifera HOM05D000051 ORTHO05D000015 4.1e-10 69.3 205 29.3
Atru.chr12.1682 Acer truncatum HOM05D017481 ORTHO05D011342 5.3e-10 68.9 117 39.3
Aqoxy3G02106 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 1.2e-09 67.8 183 32.2
Nitab4.5_0019725g0010 Nicotiana tabacum HOM05D000051 ORTHO05D011342 1.2e-09 67.8 52 61.5
Cc01_g01330 Coffea canephora HOM05D000051 ORTHO05D000015 1.5e-09 67.4 202 29.2
Dinv40730 Davidia involucrata HOM05D000051 ORTHO05D000015 1.5e-09 67.4 196 30.1
RcHm_v2.0_Chr2g0115721 Rosa chinensis HOM05D000051 ORTHO05D000015 1.5e-09 67.4 120 37.5
GSVIVG01010160001 Vitis vinifera HOM05D000312 ORTHO05D000221 1.5e-09 67.4 199 27.6
Dinv38189 Davidia involucrata HOM05D000051 ORTHO05D000015 2.0e-09 67.0 238 27.3
Atru.chr11.1487 Acer truncatum HOM05D000312 ORTHO05D000221 2.6e-09 66.6 199 28.6
Hma1.2p1_1609F.1_g293460 Hydrangea macrophylla HOM05D000051 ORTHO05D000015 5.9e-09 65.5 234 26.9
TAR629G2966 Trochodendron aralioides HOM05D017481 ORTHO05D011342 5.9e-09 65.5 82 41.5
HanXRQChr16g0503861 Helianthus annuus HOM05D000051 ORTHO05D000015 7.7e-09 65.1 194 25.8
Medtr4g080787 Medicago truncatula HOM05D000051 ORTHO05D000015 1.3e-08 64.3 209 28.2
HanXRQChr16g0503881 Helianthus annuus HOM05D000051 ORTHO05D000015 1.7e-08 63.9 194 25.3
PSO541G0345 Papaver somniferum HOM05D000051 ORTHO05D000015 1.7e-08 63.9 221 29.0
MSTRG.15164 Avicennia marina HOM05D000051 ORTHO05D000015 2.2e-08 63.5 193 27.5
PSO832G0349 Papaver somniferum HOM05D000051 ORTHO05D000015 2.2e-08 63.5 202 27.2
PSO173G0112 Papaver somniferum HOM05D000051 ORTHO05D000015 2.9e-08 63.2 202 26.7
TPR.G25974 Trifolium pratense HOM05D000051 ORTHO05D000015 2.9e-08 63.2 193 28.5
Cfa006563 Carpinus fangiana HOM05D000051 ORTHO05D000015 3.8e-08 62.8 199 27.6
Dinv20164 Davidia involucrata HOM05D000051 ORTHO05D000015 3.8e-08 62.8 205 26.3
PSO832G0529 Papaver somniferum HOM05D000051 ORTHO05D009405 3.8e-08 62.8 204 28.9
Aqoxy1G02775 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 5.0e-08 62.4 226 27.4
Ah.04g165630 Amaranthus hybridus HOM05D000051 ORTHO05D000015 6.5e-08 62.0 113 33.6
Aqoxy1G01747 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 6.5e-08 62.0 194 30.9
Cc01_g01350 Coffea canephora HOM05D000051 ORTHO05D000015 6.5e-08 62.0 200 30.0
Lj3g0021941 Lotus japonicus HOM05D000051 ORTHO05D000015 6.5e-08 62.0 215 27.0
PSO063G7649 Papaver somniferum HOM05D000051 ORTHO05D000015 6.5e-08 62.0 199 26.6
Psat4g211000 Pisum sativum HOM05D000051 ORTHO05D000015 6.5e-08 62.0 189 27.5
Prupe.4G158900 Prunus persica HOM05D000051 ORTHO05D000015 8.5e-08 61.6 194 28.9
Rhsim04G0000300 Rhododendron simsii HOM05D000051 ORTHO05D000015 1.1e-07 61.2 184 28.3
HanXRQChr11g0336291 Helianthus annuus HOM05D000051 ORTHO05D000015 1.4e-07 60.8 217 28.1
Manes.14G093700 Manihot esculenta HOM05D000312 ORTHO05D000221 1.4e-07 60.8 199 27.6
Medtr4g080773 Medicago truncatula HOM05D000051 ORTHO05D000015 1.4e-07 60.8 211 26.1
PSO170G4821 Papaver somniferum HOM05D000051 ORTHO05D009405 1.4e-07 60.8 221 25.8
Aqoxy1G03331 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 1.9e-07 60.5 226 27.9
Aqoxy3G02455 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 1.9e-07 60.5 185 28.1
CSS0004174 Camellia sinensis var. sinensis HOM05D000312 ORTHO05D000221 1.9e-07 60.5 198 26.8
CSS0019936 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 1.9e-07 60.5 182 28.6
PSO729G0253 Papaver somniferum HOM05D000051 ORTHO05D000015 1.9e-07 60.5 191 25.1
QL02p085127 Quercus lobata HOM05D000051 ORTHO05D000015 1.9e-07 60.5 188 26.6
QL05p074545 Quercus lobata HOM05D000051 ORTHO05D000015 1.9e-07 60.5 204 26.5
QL02p014278 Quercus lobata HOM05D000051 ORTHO05D000015 2.5e-07 60.1 193 27.5
Aqoxy1G02772 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 3.2e-07 59.7 238 31.1
Aqoxy6G01911 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 3.2e-07 59.7 218 27.5
CSS0008598 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 3.2e-07 59.7 230 26.1
QL08p012322 Quercus lobata HOM05D000051 ORTHO05D000015 3.2e-07 59.7 181 29.8
TAR636G0024 Trochodendron aralioides HOM05D000576 ORTHO05D000368 3.2e-07 59.7 185 29.2
Aqoxy1G03334 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 4.2e-07 59.3 220 28.2
Migut.B01513 Erythranthe guttata HOM05D000051 ORTHO05D000015 4.2e-07 59.3 182 28.6
PSO675G9061 Papaver somniferum HOM05D000051 ORTHO05D000015 4.2e-07 59.3 231 27.3
Actinidia06264 Actinidia chinensis HOM05D000051 ORTHO05D000015 5.5e-07 58.9 139 33.1
Aqoxy6G02477 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 5.5e-07 58.9 188 25.5
CSS0015502 Camellia sinensis var. sinensis HOM05D000312 ORTHO05D000221 5.5e-07 58.9 197 26.4
Lj2A948G37 Lonicera japonica HOM05D000051 ORTHO05D000015 5.5e-07 58.9 201 30.8
Manes.06G077200 Manihot esculenta HOM05D000312 ORTHO05D000221 5.5e-07 58.9 199 27.6
Manes.09G032300 Manihot esculenta HOM05D002400 ORTHO05D002568 5.5e-07 58.9 233 25.8
Oeu007604.1 Olea europaea HOM05D000051 ORTHO05D000015 5.5e-07 58.9 195 29.7
PSO063G5146 Papaver somniferum HOM05D000051 ORTHO05D000015 5.5e-07 58.9 215 26.0
PSO357G0050 Papaver somniferum HOM05D000051 ORTHO05D000015 5.5e-07 58.9 213 25.4
QL04p029275 Quercus lobata HOM05D000051 ORTHO05D000015 5.5e-07 58.9 220 25.9
Dinv17489 Davidia involucrata HOM05D000051 ORTHO05D000015 7.2e-07 58.5 190 28.9
Dinv17822 Davidia involucrata HOM05D000051 ORTHO05D000015 7.2e-07 58.5 190 29.5
Glyma.15G242400 Glycine max HOM05D000051 ORTHO05D000015 7.2e-07 58.5 194 29.4
PSO170G3444 Papaver somniferum HOM05D000051 ORTHO05D009405 7.2e-07 58.5 235 26.4
PSO339G2172 Papaver somniferum HOM05D000051 ORTHO05D000015 7.2e-07 58.5 193 25.9
PSO478G5245 Papaver somniferum HOM05D000051 ORTHO05D000015 7.2e-07 58.5 191 29.3
PSO541G3606 Papaver somniferum HOM05D000051 ORTHO05D009405 7.2e-07 58.5 239 26.8
Rhsim09G0116800 Rhododendron simsii HOM05D000312 ORTHO05D000221 7.2e-07 58.5 197 27.9
vmacro09739 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 7.2e-07 58.5 183 27.9
CSS0042786 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 9.4e-07 58.2 197 28.9
Cfa006569 Carpinus fangiana HOM05D000051 ORTHO05D000015 9.4e-07 58.2 194 26.8
Lj3g0004141 Lotus japonicus HOM05D000051 ORTHO05D000015 9.4e-07 58.2 188 28.2
MD11G1275400 Malus domestica HOM05D000051 ORTHO05D000015 9.4e-07 58.2 138 34.8
PSO170G3960 Papaver somniferum HOM05D000051 ORTHO05D000015 9.4e-07 58.2 183 27.9
PSO513G0056 Papaver somniferum HOM05D000051 ORTHO05D000015 9.4e-07 58.2 208 26.4
SGA_v2.0_scaffold52G19240 Striga asiatica HOM05D000051 ORTHO05D000015 9.4e-07 58.2 220 24.1
Glyma.15G242200 Glycine max HOM05D000051 ORTHO05D000015 1.2e-06 57.8 190 28.9
Peaxi162Scf00188g00423 Petunia axillaris HOM05D000312 ORTHO05D000221 1.2e-06 57.8 200 28.0
PGSC0003DMG401001040 Solanum tuberosum HOM05D000051 ORTHO05D000015 1.2e-06 57.8 188 27.7
HPP92_016299 Vanilla planifolia HOM05D005918 ORTHO05D008619 1.2e-06 57.8 116 34.5
Duzib106G1684 Durio zibethinus HOM05D000051 ORTHO05D000015 2.1e-06 57.0 205 28.3
HanXRQChr13g0407771 Helianthus annuus HOM05D000051 ORTHO05D000015 2.1e-06 57.0 235 27.2
MD03G1255400 Malus domestica HOM05D000051 ORTHO05D000015 2.1e-06 57.0 213 25.4
PSO782G5084 Papaver somniferum HOM05D000051 ORTHO05D009405 2.1e-06 57.0 202 26.2
Actinidia26969 Actinidia chinensis HOM05D000051 ORTHO05D000015 2.7e-06 56.6 220 25.5
CSS0013883 Camellia sinensis var. sinensis HOM05D000312 ORTHO05D000221 2.7e-06 56.6 198 26.3
Cc01_g01420 Coffea canephora HOM05D000051 ORTHO05D000015 2.7e-06 56.6 144 34.0
COL.COLO4_23029 Corchorus olitorius HOM05D000576 ORTHO05D000368 2.7e-06 56.6 98 31.6
Dinv17490 Davidia involucrata HOM05D000051 ORTHO05D000015 2.7e-06 56.6 195 27.7
Manes.05G056200 Manihot esculenta HOM05D000051 ORTHO05D000015 2.7e-06 56.6 179 23.5
PSO170G1673 Papaver somniferum HOM05D000051 ORTHO05D009405 2.7e-06 56.6 138 28.3
QL08p012534 Quercus lobata HOM05D000051 ORTHO05D000015 2.7e-06 56.6 223 27.4
QL08p012538 Quercus lobata HOM05D000051 ORTHO05D000015 2.7e-06 56.6 199 24.6
COL.COLO4_30125 Corchorus olitorius HOM05D000051 ORTHO05D000015 3.6e-06 56.2 199 25.6
Migut.M01792 Erythranthe guttata HOM05D000051 ORTHO05D000015 3.6e-06 56.2 190 26.3
Lj3C54T1 Lonicera japonica HOM05D000051 ORTHO05D014235 3.6e-06 56.2 225 27.1
Medtr4g080807 Medicago truncatula HOM05D000051 ORTHO05D000015 3.6e-06 56.2 212 25.9
Psat0s2155g0040 Pisum sativum HOM05D000051 ORTHO05D000015 3.6e-06 56.2 197 26.4
QL05p044203 Quercus lobata HOM05D000051 ORTHO05D000015 3.6e-06 56.2 220 25.5
QL05p044314 Quercus lobata HOM05D000051 ORTHO05D000015 3.6e-06 56.2 220 25.5
CSS0042719 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 4.7e-06 55.8 197 28.4
DCAR_022537 Daucus carota HOM05D000051 ORTHO05D000015 4.7e-06 55.8 221 27.1
MD10G1316000 Malus domestica HOM05D000051 ORTHO05D000015 4.7e-06 55.8 143 31.5
PSO017G2394 Papaver somniferum HOM05D000051 ORTHO05D009405 4.7e-06 55.8 205 26.8
PSO170G6457 Papaver somniferum HOM05D000051 ORTHO05D000015 4.7e-06 55.8 255 25.5
QL05p074475 Quercus lobata HOM05D000051 ORTHO05D000015 4.7e-06 55.8 225 24.9
Actinidia18763 Actinidia chinensis HOM05D000051 ORTHO05D000015 6.1e-06 55.5 197 28.9
Migut.M00541 Erythranthe guttata HOM05D000051 ORTHO05D000015 6.1e-06 55.5 103 35.0
PSO017G2530 Papaver somniferum HOM05D000051 ORTHO05D000015 6.1e-06 55.5 178 26.4
PSO170G6358 Papaver somniferum HOM05D030807 ORTHO05D009405 6.1e-06 55.5 238 25.2
PSO478G2955 Papaver somniferum HOM05D000051 ORTHO05D000015 6.1e-06 55.5 178 26.4
PSO675G3094 Papaver somniferum HOM05D000051 ORTHO05D000015 6.1e-06 55.5 222 26.6
QL01p041888 Quercus lobata HOM05D000051 ORTHO05D000015 6.1e-06 55.5 225 25.8
TPR.G24740 Trifolium pratense HOM05D000051 ORTHO05D000015 6.1e-06 55.5 192 29.2
Aqoxy1G03535 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 7.9e-06 55.1 216 24.5
Aqoxy4G01151 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 7.9e-06 55.1 182 31.3
CSS0034448 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 7.9e-06 55.1 187 28.9
Carub.0003s1893 Capsella rubella HOM05D000051 ORTHO05D000015 7.9e-06 55.1 189 23.8
Lj1A868G40 Lonicera japonica HOM05D000051 ORTHO05D000015 7.9e-06 55.1 136 36.0
PSO017G2642 Papaver somniferum HOM05D000051 ORTHO05D000015 7.9e-06 55.1 214 26.6
PSO210G0477 Papaver somniferum HOM05D000051 ORTHO05D000015 7.9e-06 55.1 221 26.7
PSO229G0087 Papaver somniferum HOM05D000051 ORTHO05D000015 7.9e-06 55.1 160 26.2
QL05p025638 Quercus lobata HOM05D000051 ORTHO05D000015 7.9e-06 55.1 181 27.6
Rhsim04G0037500 Rhododendron simsii HOM05D000051 ORTHO05D000015 7.9e-06 55.1 218 27.1
RcHm_v2.0_Chr5g0028401 Rosa chinensis HOM05D000051 ORTHO05D000015 7.9e-06 55.1 191 30.4
HPP92_016317 Vanilla planifolia HOM05D000051 ORTHO05D000493 7.9e-06 55.1 210 27.1


User provided reference genes

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