Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g035520 Solanum pennellii HOM05D007595 ORTHO05D009570 4.4e-183 646.0 910 100.0
Peaxi162Scf00793g00032 Petunia axillaris HOM05D007595 ORTHO05D009570 4.2e-125 453.4 296 78.0
CAN.G756.22 Capsicum annuum HOM05D007595 ORTHO05D009570 1.4e-123 448.4 273 82.4
Nitab4.5_0000563g0010 Nicotiana tabacum HOM05D007595 ORTHO05D009570 1.3e-118 431.8 293 74.1
PGSC0003DMG400001689 Solanum tuberosum HOM05D007595 ORTHO05D009570 1.0e-99 369.0 783 97.1
CiPaw.13G022600 Carya illinoinensis HOM05D007595 ORTHO05D009570 3.9e-78 297.4 263 54.8
Cfa011030 Carpinus fangiana HOM05D007595 ORTHO05D009570 1.1e-77 295.8 259 55.2
Duzib138G0502 Durio zibethinus HOM05D007595 ORTHO05D009570 2.5e-77 294.7 306 51.3
Rhsim05G0178700 Rhododendron simsii HOM05D007595 ORTHO05D009570 9.5e-77 292.7 304 52.3
QL04p026468 Quercus lobata HOM05D007595 ORTHO05D009570 5.2e-75 287.0 281 52.0
vmacro09088 Vaccinium macrocarpon HOM05D007595 ORTHO05D009570 1.2e-74 285.8 305 52.5
Gohir.A12G098700 Gossypium hirsutum HOM05D007595 ORTHO05D009570 2.2e-73 281.6 301 49.2
Ciclev10018805m.g Citrus clementina HOM05D007595 ORTHO05D009570 2.9e-73 281.2 296 49.3
Potri.014G052800 Populus trichocarpa HOM05D007595 ORTHO05D009570 1.1e-72 279.3 289 51.2
Sc22g0000140 Simmondsia chinensis HOM05D007595 ORTHO05D009570 1.4e-72 278.9 296 52.4
Sc22g0001280 Simmondsia chinensis HOM05D007595 ORTHO05D009570 1.4e-72 278.9 296 52.4
Lsat_1_v5_gn_4_38381 Lactuca sativa HOM05D007595 ORTHO05D009570 4.6e-71 273.9 243 55.6
Prupe.1G180300 Prunus persica HOM05D007595 ORTHO05D009570 4.6e-71 273.9 244 55.3
TWI59G0156 Tripterygium wilfordii HOM05D007595 ORTHO05D009570 2.3e-70 271.6 298 49.7
Sabra14G0039800 Salix brachista HOM05D007595 ORTHO05D009570 3.0e-70 271.2 272 51.8
ClCG05G002930 Citrullus lanatus HOM05D007595 ORTHO05D009570 8.6e-70 269.6 285 48.8
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 8.6e-70 269.6 231 55.4
CANSAT25G1659 Cannabis sativa HOM05D007595 ORTHO05D009570 7.3e-69 266.5 232 56.0
FvH4_5g25080 Fragaria vesca HOM05D007595 ORTHO05D009570 1.6e-68 265.4 231 55.0
Atru.chr5.81 Acer truncatum HOM05D007595 ORTHO05D009570 1.4e-67 262.3 306 49.0
Cc02_g25530 Coffea canephora HOM05D007595 ORTHO05D009570 2.0e-66 258.5 194 63.9
Manes.01G274800 Manihot esculenta HOM05D007595 ORTHO05D009570 2.0e-66 258.5 270 50.7
MELO3C006272.2 Cucumis melo HOM05D007595 ORTHO05D009570 1.7e-65 255.4 252 49.2
CsaV3_3G010510 Cucumis sativus L. HOM05D007595 ORTHO05D009570 1.7e-65 255.4 297 45.8
Nitab4.5_0004273g0020 Nicotiana tabacum HOM05D007595 ORTHO05D009570 1.1e-64 252.7 182 70.3
Sed0013429 Sechium edule HOM05D007595 ORTHO05D009570 7.1e-64 250.0 247 49.8
CANSAT78G1456 Cannabis sativa HOM05D007595 ORTHO05D009570 9.2e-64 249.6 232 55.2
SHI13644 Sapria himalayana HOM05D007595 ORTHO05D009570 1.2e-63 249.2 235 52.8
MSTRG.20666 Avicennia marina HOM05D007595 ORTHO05D009570 6.0e-63 246.9 266 48.5
Lj1g0026949 Lotus japonicus HOM05D007595 ORTHO05D009570 6.0e-63 246.9 237 51.9
Hund27417 Selenicereus undatus HOM05D007595 ORTHO05D009570 6.0e-63 246.9 242 52.9
Migut.B01494 Erythranthe guttata HOM05D007595 ORTHO05D009570 1.3e-62 245.7 229 52.0
Actinidia05786 Actinidia chinensis HOM05D003161 ORTHO05D009570 3.0e-62 244.6 169 70.4
Glyma.07G218100 Glycine max HOM05D007595 ORTHO05D009570 5.1e-62 243.8 253 49.8
Lalb_Chr16g0384971 Lupinus albus HOM05D007595 ORTHO05D009570 8.6e-62 243.0 233 54.1
CANSAT54G2206 Cannabis sativa HOM05D007595 ORTHO05D009570 3.3e-61 241.1 239 50.2
SalBow5G3719 Salvia bowleyana HOM05D007595 ORTHO05D009570 9.5e-61 239.6 242 50.8
Phvul.002G094300 Phaseolus vulgaris HOM05D007595 ORTHO05D009570 1.6e-60 238.8 285 45.3
THA.LOC104811608 Tarenaya hassleriana HOM05D007595 ORTHO05D009570 6.2e-60 236.9 247 49.4
Solyc01g088670.3 Solanum lycopersicum HOM05D007595 ORTHO05D009570 2.4e-59 235.0 133 100.0
Lj9C550T12 Lonicera japonica HOM05D007595 ORTHO05D009570 3.1e-59 234.6 170 64.1
Psat3g072800 Pisum sativum HOM05D007595 ORTHO05D009570 5.2e-59 233.8 252 49.6
VMungo0251G3282 Vigna mungo HOM05D007595 ORTHO05D009570 5.2e-59 233.8 244 47.5
Haze_02895 Corylus avellana HOM05D007595 ORTHO05D009570 2.2e-57 228.4 169 63.3
COL.COLO4_12359 Corchorus olitorius HOM05D007595 ORTHO05D009570 2.9e-57 228.0 169 65.1
CSS0007679 Camellia sinensis var. sinensis HOM05D007595 ORTHO05D009570 4.9e-57 227.3 169 66.3
Medtr7g091470 Medicago truncatula HOM05D007595 ORTHO05D009570 3.2e-56 224.6 260 45.8
AUR62008574 Chenopodium quinoa HOM05D007595 ORTHO05D009570 3.5e-55 221.1 169 59.8
Aqoxy7G02148 Aquilegia oxysepala HOM05D007595 ORTHO05D009570 6.0e-55 220.3 250 48.0
Ah.08g212430 Amaranthus hybridus HOM05D007595 ORTHO05D009570 7.8e-55 219.9 169 62.1
AUR62034666 Chenopodium quinoa HOM05D007595 ORTHO05D009570 7.8e-55 219.9 169 60.4
MD02G1222500 Malus domestica HOM05D007595 ORTHO05D009570 3.9e-54 217.6 169 60.9
Lalb_Chr05g0219501 Lupinus albus HOM05D007595 ORTHO05D009570 5.1e-54 217.2 254 48.0
Oeu004640.1 Olea europaea HOM05D007595 ORTHO05D009570 1.5e-53 215.7 167 58.7
Dinv44032 Davidia involucrata HOM05D007595 ORTHO05D009570 5.6e-53 213.8 174 61.5
SGA_v2.0_scaffold34G13580 Striga asiatica HOM05D007595 ORTHO05D009570 2.1e-52 211.8 230 45.7
MBI04_g20744_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D001765 1.1e-51 209.5 254 45.3
RcHm_v2.0_Chr7g0215291 Rosa chinensis HOM05D007595 ORTHO05D009570 5.2e-51 207.2 169 56.8
CDE04G2406 Ceratophyllum demersum HOM05D007595 ORTHO05D009570 9.0e-51 206.5 223 46.6
PSO675G4153 Papaver somniferum HOM05D007595 ORTHO05D009570 5.8e-50 203.8 251 45.8
EL10Ac7g17423 Beta vulgaris HOM05D007595 ORTHO05D009570 2.9e-49 201.4 169 57.4
RcHm_v2.0_Chr4g0407101 Rosa chinensis HOM05D007595 ORTHO05D009570 1.4e-48 199.1 169 55.6
PSO732G0412 Papaver somniferum HOM05D007595 ORTHO05D009570 7.1e-48 196.8 212 48.1
Nn1g00708 Nelumbo nucifera HOM05D007595 ORTHO05D009570 2.1e-47 195.3 207 50.2
PSO732G0035 Papaver somniferum HOM05D007595 ORTHO05D009570 2.3e-46 191.8 235 44.7
PGR042G2115 Punica granatum HOM05D007595 ORTHO05D009570 2.3e-46 191.8 180 51.1
Ca_08452_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 1.3e-44 186.0 172 52.3
Ca_08455_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 1.3e-44 186.0 172 52.3
HanXRQChr14g0457401 Helianthus annuus HOM05D007595 ORTHO05D009570 1.4e-43 182.6 221 44.8
TAR629G2414 Trochodendron aralioides HOM05D007595 ORTHO05D009570 8.7e-38 163.3 126 61.9
Aa31LG1G28920 Aethionema arabicum HOM05D007595 ORTHO05D009570 6.2e-36 157.1 129 58.9
DCAR_029507 Daucus carota HOM05D007595 ORTHO05D009570 1.1e-35 156.4 148 53.4
Rhsim07G0038800 Rhododendron simsii HOM05D007595 ORTHO05D009570 2.0e-34 152.1 148 54.1
Glyma.20G014500 Glycine max HOM05D007595 ORTHO05D009570 3.4e-34 151.4 126 54.0
Thecc.01G401700 Theobroma cacao HOM05D007595 ORTHO05D009570 1.9e-32 145.6 102 65.7
Gohir.D12G101900 Gossypium hirsutum HOM05D007595 ORTHO05D009570 2.7e-31 141.7 102 65.7
TPR.G3705 Trifolium pratense HOM05D007595 ORTHO05D009570 2.4e-27 128.6 100 59.0
ECA234G2641 Erigeron canadensis HOM05D007595 ORTHO05D009570 7.1e-24 117.1 124 47.6
HPP92_014879 Vanilla planifolia HOM05D007595 ORTHO05D009570 7.4e-21 107.1 143 41.3
MD07G1093100 Malus domestica HOM05D007595 ORTHO05D009570 1.6e-20 105.9 116 45.7
RcHm_v2.0_Chr4g0407111 Rosa chinensis HOM05D007595 ORTHO05D009570 1.6e-20 105.9 115 46.1
FAN18G0104 Fragaria x ananassa HOM05D007595 ORTHO05D009570 6.3e-20 104.0 115 46.1
Cpa.g.sc52.75 Carica papaya HOM05D007595 ORTHO05D009570 1.8e-19 102.4 88 52.3
Gorai.008G111100 Gossypium raimondii HOM05D007595 ORTHO05D009570 3.1e-19 101.7 76 61.8
GSVIVG01018339001 Vitis vinifera HOM05D007595 ORTHO05D009570 6.9e-19 100.5 72 59.7
Cc11_g12050 Coffea canephora HOM05D007595 ORTHO05D009570 1.4e-16 92.8 65 63.1
Sabra14G0039700 Salix brachista HOM05D007595 ORTHO05D009570 1.4e-16 92.8 89 49.4
AUR62026015 Chenopodium quinoa HOM05D007595 ORTHO05D009570 2.1e-15 89.0 162 33.3
CSS0047431 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 9.1e-11 73.6 213 23.9
CSS0045109 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 2.0e-10 72.4 209 23.9
Carub.0005s0122 Capsella rubella HOM05D007496 ORTHO05D009479 4.5e-10 71.2 161 28.6
Zm00001eb224150 Zea mays HOM05D011046 ORTHO05D013342 7.7e-10 70.5 104 42.3
Migut.I00272 Erythranthe guttata HOM05D007595 ORTHO05D009570 1.7e-09 69.3 93 41.9
Solyc01g108410.3 Solanum lycopersicum HOM05D006858 ORTHO05D008767 6.5e-09 67.4 186 24.7
Sopen01g050630 Solanum pennellii HOM05D006858 ORTHO05D008767 1.1e-08 66.6 186 24.7
AT2G02150 Arabidopsis thaliana HOM05D007496 ORTHO05D009479 1.4e-08 66.2 175 25.1
PGSC0003DMG401025809 Solanum tuberosum HOM05D006858 ORTHO05D008767 2.5e-08 65.5 188 23.9
Zm00001eb367370 Zea mays HOM05D011046 ORTHO05D013342 5.5e-08 64.3 104 43.3
ATR0665G577 Amborella trichopoda HOM05D007595 ORTHO05D009570 7.2e-08 63.9 102 49.0
Peaxi162Scf00016g00164 Petunia axillaris HOM05D006858 ORTHO05D008767 9.4e-08 63.5 227 22.9
AL5G11430 Arabidopsis lyrata HOM05D007496 ORTHO05D009479 1.2e-07 63.2 158 25.3
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 1.6e-07 62.8 236 24.6
SalBow5G0095 Salvia bowleyana HOM05D007545 ORTHO05D009579 2.1e-07 62.4 155 22.6
Eucgr.D01185 Eucalyptus grandis HOM05D007595 ORTHO05D009570 4.7e-07 61.2 54 53.7
Sabra04G0061000 Salix brachista HOM05D007291 ORTHO05D009038 6.1e-07 60.8 164 24.4
MD17G1268500 Malus domestica HOM05D007545 ORTHO05D009579 7.9e-07 60.5 134 29.1
Actinidia06485 Actinidia chinensis HOM05D007545 ORTHO05D009579 1.4e-06 59.7 137 22.6
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 1.8e-06 59.3 231 22.1
PGSC0003DMG400019642 Solanum tuberosum HOM05D007623 ORTHO05D009641 1.8e-06 59.3 164 25.6
Sopen00g002400 Solanum pennellii HOM05D007623 ORTHO05D009641 2.3e-06 58.9 164 25.6
BraA06t27256Z Brassica rapa HOM05D007496 ORTHO05D009479 3.0e-06 58.5 158 25.3
Nitab4.5_0005583g0010 Nicotiana tabacum HOM05D006858 ORTHO05D008767 3.0e-06 58.5 188 22.9
CAN.G322.19 Capsicum annuum HOM05D006858 ORTHO05D008767 3.9e-06 58.2 221 22.2
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 5.1e-06 57.8 169 24.3
Os10g0147250 Oryza sativa ssp. japonica HOM05D011046 ORTHO05D013342 5.1e-06 57.8 71 39.4
Aa31LG1G3060 Aethionema arabicum HOM05D002890 ORTHO05D009847 6.7e-06 57.4 186 23.1
BcaC06g34078 Brassica carinata HOM05D007496 ORTHO05D009479 6.7e-06 57.4 157 25.5
BolC7t43809H Brassica oleracea HOM05D007496 ORTHO05D009479 6.7e-06 57.4 157 25.5


User provided reference genes

Program Settings