Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 8.9e-93 343.6 173 100.0
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 2.6e-92 342.0 173 99.4
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 2.2e-83 312.4 175 90.9
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 4.9e-83 311.2 175 90.3
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 1.6e-81 306.2 172 88.4
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 4.0e-77 291.6 173 87.3
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 1.5e-71 273.1 173 78.6
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 7.3e-71 270.8 173 77.5
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 8.1e-70 267.3 173 76.3
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 4.0e-69 265.0 174 76.4
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 6.9e-69 264.2 173 76.9
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 1.2e-68 263.5 178 74.2
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 1.5e-68 263.1 173 77.5
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 1.5e-68 263.1 170 76.5
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 2.6e-68 262.3 174 73.6
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 3.4e-68 261.9 170 77.1
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.4e-68 261.9 173 74.6
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.4e-68 261.9 173 74.6
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.4e-68 261.9 173 74.6
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 4.5e-68 261.5 173 76.3
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 5.8e-68 261.2 175 77.7
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 7.6e-68 260.8 174 72.4
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 7.6e-68 260.8 174 73.6
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 1.3e-67 260.0 173 75.1
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 1.3e-67 260.0 173 75.7
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.7e-67 259.6 174 73.6
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 2.2e-67 259.2 173 74.6
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 6.4e-67 257.7 175 75.4
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 6.4e-67 257.7 174 74.1
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.1e-66 256.9 173 72.8
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 1.1e-66 256.9 173 72.8
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 1.1e-66 256.9 173 72.8
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 1.1e-66 256.9 173 72.8
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 1.4e-66 256.5 173 71.7
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 2.4e-66 255.8 173 72.3
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 5.4e-66 254.6 173 72.8
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 5.4e-66 254.6 174 74.1
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 7.1e-66 254.2 173 71.7
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 7.1e-66 254.2 173 69.9
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 7.1e-66 254.2 172 73.8
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 9.3e-66 253.8 175 73.1
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 9.3e-66 253.8 176 74.4
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 9.3e-66 253.8 173 72.3
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 9.3e-66 253.8 173 72.3
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 1.6e-65 253.1 165 73.9
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 1.6e-65 253.1 174 73.0
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.1e-65 252.7 203 66.5
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 2.1e-65 252.7 173 71.7
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 2.7e-65 252.3 173 72.3
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 2.7e-65 252.3 182 70.3
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 3.5e-65 251.9 173 71.7
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 3.5e-65 251.9 173 71.7
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 3.5e-65 251.9 181 70.2
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 3.5e-65 251.9 173 72.3
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 4.6e-65 251.5 173 71.7
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 4.6e-65 251.5 178 73.0
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 6.0e-65 251.1 173 71.1
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.0e-65 251.1 203 66.0
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.0e-65 251.1 203 66.0
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 7.9e-65 250.8 171 73.7
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 7.9e-65 250.8 173 72.3
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.0e-64 250.4 173 70.5
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 1.3e-64 250.0 174 73.0
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 1.8e-64 249.6 173 70.5
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 1.8e-64 249.6 174 73.0
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 1.8e-64 249.6 173 72.3
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 3.0e-64 248.8 170 70.6
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 3.0e-64 248.8 174 73.0
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 3.0e-64 248.8 173 69.9
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 3.9e-64 248.4 173 70.5
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 3.9e-64 248.4 173 69.9
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.9e-64 248.4 165 72.1
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 5.1e-64 248.1 165 70.9
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 6.7e-64 247.7 166 72.3
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 6.7e-64 247.7 163 74.2
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 8.7e-64 247.3 173 69.4
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 8.7e-64 247.3 173 69.4
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 1.1e-63 246.9 166 72.3
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 1.1e-63 246.9 166 72.3
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 1.1e-63 246.9 172 73.3
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 1.1e-63 246.9 165 70.9
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 1.9e-63 246.1 210 62.4
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.5e-63 245.7 174 69.5
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 3.3e-63 245.4 174 71.3
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.3e-63 245.4 165 70.3
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 4.3e-63 245.0 175 68.6
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 9.6e-63 243.8 176 68.8
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 3.7e-62 241.9 169 70.4
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 4.8e-62 241.5 163 72.4
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 4.8e-62 241.5 171 70.2
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 4.8e-62 241.5 197 65.0
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 1.4e-61 240.0 174 69.5
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 2.4e-61 239.2 173 67.6
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 3.1e-61 238.8 176 68.2
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 6.9e-61 237.7 169 70.4
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 9.0e-61 237.3 174 67.2
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 9.0e-61 237.3 165 69.7
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 1.2e-60 236.9 159 73.0
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 2.6e-60 235.7 181 65.7
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 4.5e-60 235.0 159 73.6
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 5.8e-60 234.6 173 66.5
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.1e-58 230.3 170 66.5
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 9.3e-58 227.3 170 67.1
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.0e-56 223.8 139 78.4
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 8.7e-56 220.7 212 59.4
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 8.7e-56 220.7 227 53.3
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 8.7e-56 220.7 165 65.5
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 2.5e-55 219.2 178 66.9
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 2.5e-55 219.2 221 57.9
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 1.3e-54 216.9 192 65.6
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 1.4e-53 213.4 173 61.3
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 2.6e-52 209.1 144 70.1
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 1.0e-51 207.2 112 91.1
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 2.5e-50 202.6 265 46.0
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 5.5e-50 201.4 184 60.3
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 9.3e-50 200.7 164 62.2
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 3.7e-46 188.7 120 75.0
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 4.8e-46 188.3 174 61.5
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 4.2e-42 175.3 170 55.3
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 2.2e-38 162.9 116 69.0
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 2.2e-35 152.9 109 68.8
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 2.9e-35 152.5 113 63.7
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 1.6e-33 146.7 139 49.6
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 6.1e-33 144.8 109 65.1
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 1.0e-32 144.1 148 45.9
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 1.1e-31 140.6 98 69.4
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 3.3e-31 139.0 120 60.8
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 6.3e-30 134.8 118 61.0
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 2.4e-29 132.9 111 59.5
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 3.5e-28 129.0 110 58.2
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 5.0e-27 125.2 81 72.8
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 5.0e-27 125.2 81 72.8
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 9.4e-26 120.9 103 57.3
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 3.6e-25 119.0 98 60.2
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 1.1e-23 114.0 63 87.3
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 6.3e-22 108.2 64 82.8
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 8.2e-22 107.8 112 42.9
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 8.2e-22 107.8 95 61.1
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 9.1e-21 104.4 99 55.6
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 2.6e-20 102.8 87 58.6
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 7.7e-20 101.3 84 65.5
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 6.5e-19 98.2 63 73.0
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 8.5e-19 97.8 99 52.5
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 1.5e-18 97.1 102 41.2
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 1.5e-18 97.1 106 43.4
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 1.4e-16 90.5 84 53.6
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 2.6e-15 86.3 105 40.0
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 1.7e-14 83.6 47 80.9
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.7e-14 82.4 104 48.1
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 7.7e-12 74.7 136 33.1
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 5.7e-07 58.5 35 80.0


User provided reference genes

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