Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g035020 Solanum pennellii HOM05D007065 ORTHO05D008960 5.0e-91 337.8 177 100.0
Solyc01g088140.3 Solanum lycopersicum HOM05D007065 ORTHO05D008960 1.3e-86 323.2 177 97.2
PGSC0003DMG400006766 Solanum tuberosum HOM05D007065 ORTHO05D008960 1.1e-82 310.1 177 93.2
Nitab4.5_0000316g0330 Nicotiana tabacum HOM05D007065 ORTHO05D008960 3.4e-63 245.4 178 79.2
Peaxi162Scf01115g00110 Petunia axillaris HOM05D007065 ORTHO05D008960 1.0e-59 233.8 177 75.7
Peaxi162Scf01115g00011 Petunia axillaris HOM05D007065 ORTHO05D008960 2.7e-44 182.6 123 79.7
Nitab4.5_0016351g0020 Nicotiana tabacum HOM05D007065 ORTHO05D008960 3.1e-40 169.1 110 81.8
MSTRG.20552 Avicennia marina HOM05D007065 ORTHO05D008960 1.6e-36 156.8 184 54.3
MSTRG.17000 Avicennia marina HOM05D007065 ORTHO05D008960 8.1e-33 144.4 187 50.8
Dinv05022 Davidia involucrata HOM05D007065 ORTHO05D008960 1.1e-32 144.1 176 50.6
SGA_v2.0_scaffold4G02459 Striga asiatica HOM05D007065 ORTHO05D008960 4.0e-32 142.1 184 52.2
MD07G1026200 Malus domestica HOM05D007065 ORTHO05D008960 2.0e-31 139.8 175 50.9
Cc02_g30050 Coffea canephora HOM05D007065 ORTHO05D008960 2.6e-31 139.4 190 46.8
CsaV3_5G024860 Cucumis sativus L. HOM05D007065 ORTHO05D008960 5.8e-31 138.3 178 51.1
Oeu027356.1 Olea europaea HOM05D007065 ORTHO05D008960 9.9e-31 137.5 114 64.0
MELO3C005114.2 Cucumis melo HOM05D007065 ORTHO05D008960 1.3e-30 137.1 178 50.6
Migut.B01254 Erythranthe guttata HOM05D007065 ORTHO05D008960 1.3e-30 137.1 186 51.6
Lsat_1_v5_gn_1_99921 Lactuca sativa HOM05D007065 ORTHO05D008960 1.7e-30 136.7 178 47.2
EL10Ac2g02888 Beta vulgaris HOM05D007065 ORTHO05D008960 6.4e-30 134.8 177 50.3
QL04p012215 Quercus lobata HOM05D007065 ORTHO05D008960 6.4e-30 134.8 173 49.1
CiPaw.13G009300 Carya illinoinensis HOM05D007065 ORTHO05D008960 1.4e-29 133.7 178 51.7
Rhsim07G0061200 Rhododendron simsii HOM05D007065 ORTHO05D008960 1.4e-29 133.7 192 48.4
ClCG01G007790 Citrullus lanatus HOM05D007065 ORTHO05D008960 1.6e-28 130.2 174 51.1
GSVIVG01001464001 Vitis vinifera HOM05D007065 ORTHO05D008960 2.1e-28 129.8 173 49.1
Manes.04G064100 Manihot esculenta HOM05D007065 ORTHO05D008960 2.7e-28 129.4 175 52.6
Actinidia06280 Actinidia chinensis HOM05D007065 ORTHO05D008960 7.9e-28 127.9 176 48.3
Actinidia19434 Actinidia chinensis HOM05D007065 ORTHO05D008960 7.9e-28 127.9 173 48.0
Lalb_Chr04g0263741 Lupinus albus HOM05D007065 ORTHO05D008960 1.3e-27 127.1 174 46.6
PSO339G2565 Papaver somniferum HOM05D007065 ORTHO05D008960 1.3e-27 127.1 172 49.4
Psat5g211000 Pisum sativum HOM05D007065 ORTHO05D008960 1.3e-27 127.1 118 56.8
DCAR_022363 Daucus carota HOM05D007065 ORTHO05D008960 2.3e-27 126.3 176 52.3
Nn2g15140 Nelumbo nucifera HOM05D007065 ORTHO05D008960 3.0e-27 125.9 173 50.3
Sed0022285 Sechium edule HOM05D007065 ORTHO05D008960 3.0e-27 125.9 175 48.6
MD02G1298000 Malus domestica HOM05D007065 ORTHO05D008960 3.9e-27 125.6 173 49.7
ECA248G1453 Erigeron canadensis HOM05D007065 ORTHO05D008960 5.1e-27 125.2 177 45.8
Medtr3g436080 Medicago truncatula HOM05D007065 ORTHO05D008960 5.1e-27 125.2 174 46.0
Aqoxy1G00221 Aquilegia oxysepala HOM05D007065 ORTHO05D008960 8.7e-27 124.4 176 44.3
Sc10g0004180 Simmondsia chinensis HOM05D007065 ORTHO05D008960 1.1e-26 124.0 96 65.6
PGR031G2384 Punica granatum HOM05D007065 ORTHO05D008960 1.5e-26 123.6 175 45.7
SalBow5G3075 Salvia bowleyana HOM05D007065 ORTHO05D008960 1.5e-26 123.6 163 52.1
unitig_22.g5430 Utricularia gibba HOM05D007065 ORTHO05D008960 1.5e-26 123.6 175 46.9
HanXRQChr01g0020971 Helianthus annuus HOM05D007065 ORTHO05D008960 1.9e-26 123.2 176 44.3
MBI13_g15309_MAGBIO Magnolia biondii HOM05D007065 ORTHO05D008960 1.9e-26 123.2 170 47.6
Phvul.005G034300 Phaseolus vulgaris HOM05D007065 ORTHO05D008960 2.5e-26 122.9 118 55.9
FAN01G0916 Fragaria x ananassa HOM05D007065 ORTHO05D008960 3.3e-26 122.5 173 48.0
Glyma.11G157140 Glycine max HOM05D007065 ORTHO05D008960 3.3e-26 122.5 118 55.9
PSO384G3763 Papaver somniferum HOM05D007065 ORTHO05D008960 3.3e-26 122.5 172 48.8
SalBow5G0133 Salvia bowleyana HOM05D007065 ORTHO05D008960 4.3e-26 122.1 167 49.7
Oeu049459.1 Olea europaea HOM05D007065 ORTHO05D008960 7.4e-26 121.3 104 64.4
THA.LOC104819111 Tarenaya hassleriana HOM05D007065 ORTHO05D008960 7.4e-26 121.3 96 68.8
Lj3g0026300 Lotus japonicus HOM05D007065 ORTHO05D008960 2.1e-25 119.8 175 49.1
Ca_14187_v3 Cicer arietinum L. HOM05D007065 ORTHO05D008960 3.7e-25 119.0 176 45.5
Hund13309 Selenicereus undatus HOM05D007065 ORTHO05D008960 3.7e-25 119.0 173 46.2
ATR1134G106 Amborella trichopoda HOM05D007065 ORTHO05D008960 4.8e-25 118.6 173 46.8
Aa31LG11G7640 Aethionema arabicum HOM05D007065 ORTHO05D008960 6.2e-25 118.2 176 44.9
FvH4_7g02000 Fragaria vesca HOM05D007065 ORTHO05D008960 6.2e-25 118.2 173 46.8
Eucgr.G03272 Eucalyptus grandis HOM05D007065 ORTHO05D008960 8.1e-25 117.9 172 45.9
FAN06G0835 Fragaria x ananassa HOM05D007065 ORTHO05D008960 1.8e-24 116.7 173 46.2
AUR62037250 Chenopodium quinoa HOM05D007065 ORTHO05D008960 4.0e-24 115.5 126 54.0
Lj9P644T43 Lonicera japonica HOM05D007065 ORTHO05D008960 1.2e-23 114.0 106 63.2
vmacro13712 Vaccinium macrocarpon HOM05D007065 ORTHO05D008960 1.2e-23 114.0 169 46.7
Potri.001G020700 Populus trichocarpa HOM05D007065 ORTHO05D008960 2.0e-23 113.2 174 46.0
Cfa010837 Carpinus fangiana HOM05D007065 ORTHO05D008960 3.4e-23 112.5 161 48.4
Sabra01G0015300 Salix brachista HOM05D007065 ORTHO05D008960 3.4e-23 112.5 96 62.5
COL.COLO4_19334 Corchorus olitorius HOM05D002616 ORTHO05D003192 7.6e-23 111.3 98 61.2
Dinv32064 Davidia involucrata HOM05D007065 ORTHO05D008960 7.6e-23 111.3 154 48.7
AUR62030541 Chenopodium quinoa HOM05D007065 ORTHO05D008960 1.0e-22 110.9 106 56.6
arahy.Tifrunner.gnm1.ann1.D1ESAM Arachis hypogaea HOM05D007065 ORTHO05D008960 1.7e-22 110.2 174 41.4
arahy.Tifrunner.gnm1.ann1.ZUZF0V Arachis hypogaea HOM05D007065 ORTHO05D008960 1.7e-22 110.2 167 42.5
Cpa.g.sc197.20 Carica papaya HOM05D007065 ORTHO05D008960 1.7e-22 110.2 160 48.1
A02p01960 Brassica napus HOM05D007065 ORTHO05D008960 3.8e-22 109.0 174 43.1
Ah.12g065220 Amaranthus hybridus HOM05D007065 ORTHO05D008960 4.9e-22 108.6 134 51.5
AL6G24090 Arabidopsis lyrata HOM05D007065 ORTHO05D008960 1.1e-21 107.5 97 60.8
BraA02t05169Z Brassica rapa HOM05D007065 ORTHO05D008960 1.4e-21 107.1 174 43.1
Thecc.10G002700 Theobroma cacao HOM05D007065 ORTHO05D008960 1.4e-21 107.1 100 60.0
BcaNung01150 Brassica carinata HOM05D007065 ORTHO05D008960 1.9e-21 106.7 137 48.2
Carub.0006s1163 Capsella rubella HOM05D007065 ORTHO05D008960 3.2e-21 105.9 174 41.4
Duzib128G1478 Durio zibethinus HOM05D007065 ORTHO05D008960 5.5e-21 105.1 178 45.5
RcHm_v2.0_Chr1g0318991 Rosa chinensis HOM05D007065 ORTHO05D008960 5.5e-21 105.1 176 44.9
TAR636G1654 Trochodendron aralioides HOM05D007065 ORTHO05D008960 5.5e-21 105.1 103 58.3
Sp6g30550 Schrenkiella parvula HOM05D007065 ORTHO05D008960 1.6e-20 103.6 179 42.5
BolC9t59205H Brassica oleracea HOM05D007065 ORTHO05D008960 2.1e-20 103.2 176 44.3
A10p24790 Brassica napus HOM05D007065 ORTHO05D008960 2.7e-20 102.8 176 43.8
C09p63610 Brassica napus HOM05D007065 ORTHO05D008960 2.7e-20 102.8 108 57.4
Potri.003G203900 Populus trichocarpa HOM05D007065 ORTHO05D008960 3.5e-20 102.4 173 44.5
AT5G13470 Arabidopsis thaliana HOM05D007065 ORTHO05D008960 4.6e-20 102.1 174 42.5
C02p06180 Brassica napus HOM05D007065 ORTHO05D008960 4.6e-20 102.1 174 41.4
BolC2t06559H Brassica oleracea HOM05D007065 ORTHO05D008960 4.6e-20 102.1 174 41.4
CDE04G3117 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 6.0e-20 101.7 176 40.9
VMungo1080G1068 Vigna mungo HOM05D007065 ORTHO05D008960 1.0e-19 100.9 103 53.4
Hma1.2p1_0579F.1_g182650 Hydrangea macrophylla HOM05D007065 ORTHO05D008960 1.3e-19 100.5 158 44.9
BcaNung01886 Brassica carinata HOM05D007065 ORTHO05D002715 3.9e-19 99.0 155 42.6
CDE07G0125 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 3.9e-19 99.0 176 40.9
Duzib114G0680 Durio zibethinus HOM05D007065 ORTHO05D008960 5.1e-19 98.6 183 39.9
Gohir.D13G013700 Gossypium hirsutum HOM05D007065 ORTHO05D008960 1.5e-18 97.1 95 56.8
BraA10t44543Z Brassica rapa HOM05D007065 ORTHO05D008960 1.9e-18 96.7 175 43.4
TPR.G15470 Trifolium pratense HOM05D007065 ORTHO05D008960 3.3e-18 95.9 102 52.0
FAN03G0341 Fragaria x ananassa HOM05D007065 ORTHO05D008960 5.3e-16 88.6 159 42.8
Thhalv10014938m.g Eutrema salsugineum HOM05D007065 ORTHO05D008960 6.9e-16 88.2 165 41.2
CSS0014876 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D000473 4.5e-15 85.5 81 59.3
Haze_03101 Corylus avellana HOM05D007065 ORTHO05D008960 5.8e-15 85.1 146 43.2
FAN28G1096 Fragaria x ananassa HOM05D007065 ORTHO05D008960 5.8e-15 85.1 73 58.9
TWI09G1481 Tripterygium wilfordii HOM05D007065 ORTHO05D008960 5.8e-15 85.1 98 49.0
HPP92_001654 Vanilla planifolia HOM05D007065 ORTHO05D008960 1.3e-14 84.0 174 36.2
Thecc.03G067800 Theobroma cacao HOM05D007065 ORTHO05D008960 3.8e-14 82.4 82 52.4
CANSAT80G2361 Cannabis sativa HOM05D007065 ORTHO05D008960 4.2e-13 79.0 59 66.1
Gohir.A13G012500 Gossypium hirsutum HOM05D007065 ORTHO05D008960 6.1e-12 75.1 78 55.1
AagrBONN_evm.TU.Sc2ySwM_228.825 Anthoceros agrestis HOM05D007065 ORTHO05D008960 1.3e-11 73.9 170 37.6
Gorai.013G014700 Gossypium raimondii HOM05D007065 ORTHO05D008960 6.7e-11 71.6 78 56.4
Mapoly0014s0118 Marchantia polymorpha HOM05D007065 ORTHO05D008960 2.8e-09 66.2 176 31.2
Os01g0939400 Oryza sativa ssp. japonica HOM05D007065 ORTHO05D008960 1.0e-06 57.8 170 31.8
Zm00001eb141670 Zea mays HOM05D007065 ORTHO05D008960 2.2e-06 56.6 67 47.8
CBR_g4751 Chara braunii HOM05D007065 ORTHO05D008960 3.8e-06 55.8 65 47.7


User provided reference genes

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