Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g034880 Solanum pennellii HOM05D007109 ORTHO05D008813 1.4e-165 586.3 306 100.0
PGSC0003DMG400041994 Solanum tuberosum HOM05D007109 ORTHO05D008813 1.1e-154 550.1 306 91.8
PGSC0003DMG402006771 Solanum tuberosum HOM05D007109 ORTHO05D008813 1.1e-154 550.1 306 91.8
Solyc01g087980.4 Solanum lycopersicum HOM05D007109 ORTHO05D008813 1.7e-131 473.0 259 95.8
CAN.G909.14 Capsicum annuum HOM05D007109 ORTHO05D008813 1.2e-129 466.8 306 79.1
Nitab4.5_0001244g0020 Nicotiana tabacum HOM05D007109 ORTHO05D008813 1.3e-118 430.3 306 73.2
Nitab4.5_0004222g0010 Nicotiana tabacum HOM05D007109 ORTHO05D008813 2.2e-118 429.5 306 71.6
Peaxi162Scf01108g00310 Petunia axillaris HOM05D007109 ORTHO05D008813 3.4e-111 405.6 294 72.8
Cc02_g28960 Coffea canephora HOM05D007109 ORTHO05D008813 3.8e-62 242.7 299 43.5
Dinv07428 Davidia involucrata HOM05D007109 ORTHO05D008813 3.2e-61 239.6 307 44.0
QL04p010443 Quercus lobata HOM05D007109 ORTHO05D008813 2.2e-57 226.9 311 40.8
Prupe.2G023200 Prunus persica HOM05D007109 ORTHO05D008813 4.8e-57 225.7 307 40.7
Solyc04g050200.1 Solanum lycopersicum HOM05D007109 ORTHO05D008813 1.1e-56 224.6 139 87.1
Cfa010821 Carpinus fangiana HOM05D007109 ORTHO05D008813 7.7e-55 218.4 290 39.0
Thecc.01G404600 Theobroma cacao HOM05D007109 ORTHO05D008813 1.3e-54 217.6 299 40.1
Duzib138G1369 Durio zibethinus HOM05D007109 ORTHO05D008813 1.9e-53 213.8 305 39.0
MSTRG.20556 Avicennia marina HOM05D007109 ORTHO05D008813 9.4e-53 211.5 287 44.3
Sabra09G0040900 Salix brachista HOM05D007109 ORTHO05D008813 1.2e-52 211.1 286 40.6
MD07G1022700 Malus domestica HOM05D007109 ORTHO05D008813 3.6e-52 209.5 309 39.8
Potri.009G055800 Populus trichocarpa HOM05D007109 ORTHO05D008813 3.6e-52 209.5 307 38.8
Actinidia19426 Actinidia chinensis HOM05D007109 ORTHO05D008813 1.0e-51 208.0 303 41.9
RcHm_v2.0_Chr1g0318291 Rosa chinensis HOM05D007109 ORTHO05D008813 2.3e-51 206.8 308 40.3
MD02G1301300 Malus domestica HOM05D007109 ORTHO05D008813 5.1e-51 205.7 308 39.6
Atru.chr11.2527 Acer truncatum HOM05D007109 ORTHO05D008813 1.5e-50 204.1 318 36.2
FvH4_7g01730 Fragaria vesca HOM05D007109 ORTHO05D008813 3.3e-50 203.0 309 40.1
FAN06G2427 Fragaria x ananassa HOM05D007109 ORTHO05D008813 3.3e-50 203.0 309 40.1
MD07G1022600 Malus domestica HOM05D007109 ORTHO05D008813 3.3e-50 203.0 296 38.9
Oeu014598.1 Olea europaea HOM05D007109 ORTHO05D008813 5.7e-50 202.2 292 41.1
Duzib133G0385 Durio zibethinus HOM05D007109 ORTHO05D008813 9.7e-50 201.4 282 36.9
FAN03G1693 Fragaria x ananassa HOM05D007109 ORTHO05D008813 9.7e-50 201.4 309 39.8
Manes.10G135500 Manihot esculenta HOM05D007109 ORTHO05D008813 2.2e-49 200.3 285 37.9
Lalb_Chr01g0000491 Lupinus albus HOM05D007109 ORTHO05D008813 3.7e-49 199.5 294 38.8
CiPaw.13G008200 Carya illinoinensis HOM05D007109 ORTHO05D008813 4.8e-49 199.1 303 38.6
Duzib268G1698 Durio zibethinus HOM05D007109 ORTHO05D008813 4.8e-49 199.1 298 36.9
COL.COLO4_12331 Corchorus olitorius HOM05D007109 ORTHO05D008813 1.4e-48 197.6 313 38.7
arahy.Tifrunner.gnm1.ann1.K9M8RY Arachis hypogaea HOM05D007109 ORTHO05D008813 4.1e-48 196.1 289 37.4
Phvul.005G036000 Phaseolus vulgaris HOM05D007109 ORTHO05D008813 4.1e-48 196.1 309 36.9
Ciclev10032181m.g Citrus clementina HOM05D007109 ORTHO05D008813 5.3e-48 195.7 295 38.6
CiPaw.15G135600 Carya illinoinensis HOM05D007109 ORTHO05D008813 6.9e-48 195.3 303 37.6
Medtr3g028060 Medicago truncatula HOM05D007109 ORTHO05D008813 9.1e-48 194.9 306 36.6
Lj3g0020735 Lotus japonicus HOM05D007109 ORTHO05D008813 2.6e-47 193.4 303 40.9
Gorai.004G169100 Gossypium raimondii HOM05D007109 ORTHO05D008813 1.3e-46 191.0 309 37.9
Eucgr.G03285 Eucalyptus grandis HOM05D007109 ORTHO05D008813 1.7e-46 190.7 284 37.0
Medtr0003s0580 Medicago truncatula HOM05D007109 ORTHO05D008813 1.7e-46 190.7 304 38.5
CiPaw.14G003600 Carya illinoinensis HOM05D007109 ORTHO05D008813 2.2e-46 190.3 303 36.3
Glyma.04G142400 Glycine max HOM05D007109 ORTHO05D008813 2.2e-46 190.3 302 37.7
Gohir.D08G162700 Gossypium hirsutum HOM05D007109 ORTHO05D008813 2.9e-46 189.9 302 37.7
TPR.G14571 Trifolium pratense HOM05D007109 ORTHO05D008813 6.5e-46 188.7 305 37.4
Lalb_Chr25g0282601 Lupinus albus HOM05D007109 ORTHO05D008813 8.5e-46 188.3 304 36.8
Nn7g36341 Nelumbo nucifera HOM05D007109 ORTHO05D008813 1.1e-45 188.0 306 33.7
TPR.G8349 Trifolium pratense HOM05D007109 ORTHO05D008813 3.2e-45 186.4 313 40.3
Rhsim07G0059100 Rhododendron simsii HOM05D007109 ORTHO05D008813 4.2e-45 186.0 306 36.9
Hma1.2p1_0269F.1_g107760 Hydrangea macrophylla HOM05D007109 ORTHO05D008813 5.5e-45 185.7 298 38.3
Psat7g150920 Pisum sativum HOM05D007109 ORTHO05D008813 3.6e-44 183.0 291 37.5
Rhsim01G0124900 Rhododendron simsii HOM05D007109 ORTHO05D008813 7.9e-44 181.8 294 37.8
MSTRG.5044 Avicennia marina HOM05D007109 ORTHO05D008813 1.0e-43 181.4 285 37.5
Ca_26440_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 1.4e-43 181.0 284 37.0
FAN10G2826 Fragaria x ananassa HOM05D007109 ORTHO05D008813 3.9e-43 179.5 271 39.9
Migut.B01258 Erythranthe guttata HOM05D007109 ORTHO05D008813 8.8e-43 178.3 302 40.1
Glyma.11G159021 Glycine max HOM05D007109 ORTHO05D008813 1.1e-42 177.9 310 36.8
TAR633G0887 Trochodendron aralioides HOM05D007109 ORTHO05D008813 2.6e-42 176.8 307 33.9
ECA248G3518 Erigeron canadensis HOM05D007109 ORTHO05D008813 5.7e-42 175.6 286 34.6
Manes.07G011500 Manihot esculenta HOM05D007109 ORTHO05D008813 5.7e-42 175.6 301 33.6
MSTRG.17005 Avicennia marina HOM05D007109 ORTHO05D008813 7.4e-42 175.3 286 37.8
Lj3g0012595 Lotus japonicus HOM05D007109 ORTHO05D008813 2.2e-41 173.7 330 33.9
Lsat_1_v5_gn_1_104720 Lactuca sativa HOM05D007109 ORTHO05D008813 4.8e-41 172.6 289 36.0
Cpa.g.c33908 Carica papaya HOM05D007109 ORTHO05D008813 1.1e-40 171.4 289 34.6
Oeu049473.1 Olea europaea HOM05D007109 ORTHO05D008813 1.1e-40 171.4 307 37.5
Migut.B01259 Erythranthe guttata HOM05D007109 ORTHO05D008813 1.8e-40 170.6 282 35.1
THA.LOC104827430 Tarenaya hassleriana HOM05D007109 ORTHO05D008813 5.3e-40 169.1 301 34.2
Cpa.g.sc125.54 Carica papaya HOM05D007109 ORTHO05D008813 9.1e-40 168.3 289 34.6
Lsat_1_v5_gn_1_104740 Lactuca sativa HOM05D007109 ORTHO05D008813 9.1e-40 168.3 305 37.4
vmacro13701 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 1.5e-39 167.5 308 37.0
HanXRQChr01g0007891 Helianthus annuus HOM05D007109 ORTHO05D008813 2.6e-39 166.8 291 34.0
vmacro13699 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 2.2e-38 163.7 291 34.4
TWI09G0588 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 2.9e-38 163.3 307 33.9
Ca_27474_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 5.0e-38 162.5 290 33.4
Actinidia23253 Actinidia chinensis HOM05D007109 ORTHO05D008813 4.2e-37 159.5 237 40.5
MELO3C024000.2 Cucumis melo HOM05D007109 ORTHO05D008813 4.7e-36 156.0 283 35.0
CANSAT80G2748 Cannabis sativa HOM05D007109 ORTHO05D008813 8.0e-36 155.2 268 36.2
SGA_v2.0_scaffold4G02475 Striga asiatica HOM05D007109 ORTHO05D008813 1.0e-35 154.8 287 36.9
TWI73G0029 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 1.0e-35 154.8 306 35.3
ClCG09G004450 Citrullus lanatus HOM05D007109 ORTHO05D008813 1.8e-35 154.1 306 30.4
Sed0006814 Sechium edule HOM05D007109 ORTHO05D008813 2.0e-34 150.6 304 34.2
ClCG10G012150 Citrullus lanatus HOM05D007109 ORTHO05D008813 8.2e-33 145.2 296 33.4
Gohir.A08G141600 Gossypium hirsutum HOM05D007109 ORTHO05D008813 1.4e-32 144.4 309 34.6
CsaV3_7G030690 Cucumis sativus L. HOM05D007109 ORTHO05D008813 4.1e-32 142.9 308 26.9
SalBow5G4816 Salvia bowleyana HOM05D007109 ORTHO05D008813 1.2e-31 141.4 286 33.2
SalBow5G4465 Salvia bowleyana HOM05D007109 ORTHO05D008813 2.6e-31 140.2 287 32.8
Sed0019738 Sechium edule HOM05D007109 ORTHO05D008813 4.5e-31 139.4 286 30.8
Sed0023192 Sechium edule HOM05D007109 ORTHO05D008813 1.3e-30 137.9 287 29.6
Sed0007712 Sechium edule HOM05D007109 ORTHO05D008813 2.9e-30 136.7 312 33.3
VMungo1080G0219 Vigna mungo HOM05D007109 ORTHO05D008813 6.5e-30 135.6 227 34.4
MELO3C023587.2 Cucumis melo HOM05D007109 ORTHO05D008813 3.6e-28 129.8 303 25.4
Medtr3g034370 Medicago truncatula HOM05D007109 ORTHO05D008813 4.7e-28 129.4 218 35.8
Medtr3g034410 Medicago truncatula HOM05D007109 ORTHO05D008813 8.0e-28 128.6 302 30.5
SGA_v2.0_scaffold354G49753 Striga asiatica HOM05D007109 ORTHO05D008813 8.8e-27 125.2 290 30.0
AUR62009423 Chenopodium quinoa HOM05D007109 ORTHO05D008813 5.7e-26 122.5 286 30.4
Ah.10g038560 Amaranthus hybridus HOM05D007109 ORTHO05D008813 6.3e-25 119.0 295 29.8
AUR62023101 Chenopodium quinoa HOM05D007109 ORTHO05D008813 1.4e-24 117.9 287 30.7
Sc14g0004980 Simmondsia chinensis HOM05D007109 ORTHO05D008813 3.8e-22 109.8 333 29.4
unitig_22.g5431 Utricularia gibba HOM05D007109 ORTHO05D008813 2.7e-20 103.6 193 34.7
Gohir.A12G100450 Gossypium hirsutum HOM05D007109 ORTHO05D008813 2.6e-18 97.1 126 38.9
Actinidia08354 Actinidia chinensis HOM05D007109 ORTHO05D008813 1.1e-16 91.7 126 41.3
Actinidia25349 Actinidia chinensis HOM05D007109 ORTHO05D008813 1.1e-16 91.7 126 41.3
TPR.G40170 Trifolium pratense HOM05D007109 ORTHO05D008813 1.9e-13 80.9 99 40.4
Medtr3g034540 Medicago truncatula HOM05D007109 ORTHO05D008813 5.2e-11 72.8 127 32.3
unitig_749.g14346 Utricularia gibba HOM05D002440 ORTHO05D002576 3.4e-10 70.1 308 20.8
SEGI_08203 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 1.7e-09 67.8 330 23.3
CsaV3_3G031910 Cucumis sativus L. HOM05D007109 ORTHO05D008813 2.2e-09 67.4 123 32.5
AL1G10850 Arabidopsis lyrata HOM05D002440 ORTHO05D002576 4.9e-09 66.2 304 20.1
Phvul.008G059600 Phaseolus vulgaris HOM05D002440 ORTHO05D002576 4.9e-09 66.2 309 20.4
BraA10t42324Z Brassica rapa HOM05D002440 ORTHO05D002576 8.3e-09 65.5 304 19.7
Sed0022646 Sechium edule HOM05D002440 ORTHO05D002576 8.3e-09 65.5 308 20.1
SGA_v2.0_scaffold4G02292 Striga asiatica HOM05D000137 ORTHO05D002576 8.3e-09 65.5 314 21.3
A10p00440 Brassica napus HOM05D002440 ORTHO05D002576 1.1e-08 65.1 304 20.1
Sabra08G0063500 Salix brachista HOM05D002440 ORTHO05D002576 1.1e-08 65.1 240 21.7
Migut.N01457 Erythranthe guttata HOM05D002440 ORTHO05D002576 1.4e-08 64.7 310 23.2
Carub.0001s0069 Capsella rubella HOM05D002440 ORTHO05D002576 1.8e-08 64.3 306 19.6
PSO782G0131 Papaver somniferum HOM05D002440 ORTHO05D002576 2.4e-08 63.9 307 19.5
BcaB03g13592 Brassica carinata HOM05D002440 ORTHO05D002576 4.1e-08 63.2 304 19.4
C05p00480 Brassica napus HOM05D002440 ORTHO05D002576 4.1e-08 63.2 304 19.4
BolC5t28837H Brassica oleracea HOM05D002440 ORTHO05D002576 4.1e-08 63.2 304 19.4
AT1G01550 Arabidopsis thaliana HOM05D002440 ORTHO05D002576 1.2e-07 61.6 302 19.5
Ah.05g180270 Amaranthus hybridus HOM05D002440 ORTHO05D002576 1.6e-07 61.2 311 19.9
ATR0782G062 Amborella trichopoda HOM05D002440 ORTHO05D008813 2.0e-07 60.8 99 33.3
Psat3g108800 Pisum sativum HOM05D002440 ORTHO05D002576 2.0e-07 60.8 311 18.6
Sp1g00770 Schrenkiella parvula HOM05D002440 ORTHO05D002576 2.0e-07 60.8 306 19.9
Gohir.D11G097700 Gossypium hirsutum HOM05D002440 ORTHO05D002576 2.7e-07 60.5 307 21.8
Thhalv10008079m.g Eutrema salsugineum HOM05D002440 ORTHO05D002576 3.5e-07 60.1 307 21.5
PSO478G1852 Papaver somniferum HOM05D002440 ORTHO05D002576 3.5e-07 60.1 307 18.6
Phvul.008G059500 Phaseolus vulgaris HOM05D002440 ORTHO05D002576 3.5e-07 60.1 314 21.0
Glyma.18G237000 Glycine max HOM05D002440 ORTHO05D002576 4.6e-07 59.7 304 20.4
Gorai.007G102300 Gossypium raimondii HOM05D002440 ORTHO05D002576 4.6e-07 59.7 307 22.1
HPP92_012893 Vanilla planifolia HOM05D002440 ORTHO05D002576 5.9e-07 59.3 324 19.8
Potri.014G088600 Populus trichocarpa HOM05D002440 ORTHO05D002576 7.8e-07 58.9 307 21.5
QL04p054979 Quercus lobata HOM05D002440 ORTHO05D002576 1.3e-06 58.2 275 22.9
Aa31LG1G10730 Aethionema arabicum HOM05D002440 ORTHO05D002576 1.7e-06 57.8 299 19.4
MELO3C021186.2 Cucumis melo HOM05D002440 ORTHO05D002576 1.7e-06 57.8 110 30.9
Hund16666 Selenicereus undatus HOM05D002440 ORTHO05D002576 1.7e-06 57.8 309 22.0
ClCG06G003470 Citrullus lanatus HOM05D002440 ORTHO05D002576 2.3e-06 57.4 110 30.0
Duzib133G1249 Durio zibethinus HOM05D002440 ORTHO05D002576 2.3e-06 57.4 307 19.5
Gohir.A11G091300 Gossypium hirsutum HOM05D002440 ORTHO05D002576 2.3e-06 57.4 117 28.2
Lj3g0009121 Lotus japonicus HOM05D002440 ORTHO05D002576 2.3e-06 57.4 317 19.9
TPR.G40619 Trifolium pratense HOM05D007109 ORTHO05D008813 2.3e-06 57.4 98 34.7
MELO3C006091.2 Cucumis melo HOM05D002440 ORTHO05D002576 2.9e-06 57.0 303 20.5
Sed0020411 Sechium edule HOM05D002440 ORTHO05D002576 2.9e-06 57.0 110 30.0
CiPaw.01G065100 Carya illinoinensis HOM05D002440 ORTHO05D002576 3.9e-06 56.6 311 21.2
Ciclev10020322m.g Citrus clementina HOM05D002440 ORTHO05D002576 3.9e-06 56.6 313 21.1
THA.LOC104817031 Tarenaya hassleriana HOM05D002440 ORTHO05D002576 3.9e-06 56.6 303 19.1
Sed0005808 Sechium edule HOM05D002440 ORTHO05D002576 5.0e-06 56.2 306 21.9
CsaV3_3G008740 Cucumis sativus L. HOM05D002440 ORTHO05D002576 6.6e-06 55.8 308 20.8
Glyma.09G255800 Glycine max HOM05D002440 ORTHO05D002576 6.6e-06 55.8 306 19.6
Os10g0513300 Oryza sativa ssp. japonica HOM05D002440 ORTHO05D002576 6.6e-06 55.8 305 18.7
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 8.6e-06 55.5 309 19.1
Duzib268G0409 Durio zibethinus HOM05D002440 ORTHO05D002576 8.6e-06 55.5 307 21.2
Oeu018967.1 Olea europaea HOM05D002440 ORTHO05D002576 8.6e-06 55.5 311 19.9
Sed0022066 Sechium edule HOM05D002440 ORTHO05D002576 8.6e-06 55.5 312 19.9
VMungo1383G1374 Vigna mungo HOM05D002440 ORTHO05D002576 8.6e-06 55.5 110 28.2


User provided reference genes

Program Settings