Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 0.0e+00 1102.8 577 100.0
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 0.0e+00 1093.6 577 99.1
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 2.0e-306 1055.0 576 96.2
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 1.7e-297 1025.4 578 93.3
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 2.9e-297 1024.6 582 90.9
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 1.7e-289 998.8 576 89.6
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 9.1e-267 923.3 575 84.7
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 2.9e-265 918.3 568 83.6
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 1.2e-263 912.9 574 80.7
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 6.1e-263 910.6 571 80.7
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 3.3e-261 904.8 561 81.1
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 3.1e-259 898.3 581 80.0
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 1.2e-258 896.3 532 84.0
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 7.7e-258 893.6 564 80.1
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 1.0e-257 893.3 534 83.3
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 6.5e-257 890.6 567 79.5
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 6.5e-257 890.6 565 79.8
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 6.5e-257 890.6 572 80.2
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 8.5e-257 890.2 585 78.8
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.1e-256 889.8 565 79.6
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 1.5e-256 889.4 559 81.0
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 2.5e-256 888.6 563 79.9
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 3.2e-256 888.3 541 82.6
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 7.2e-256 887.1 527 84.8
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 1.6e-255 885.9 561 80.2
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 2.1e-255 885.6 563 79.4
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 2.7e-255 885.2 532 83.1
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 3.6e-255 884.8 571 78.6
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 3.6e-255 884.8 583 78.2
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 4.7e-255 884.4 569 78.9
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 8.0e-255 883.6 575 79.7
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 8.0e-255 883.6 532 82.9
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 1.0e-254 883.2 566 79.9
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 1.4e-254 882.9 525 84.2
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 1.8e-254 882.5 533 83.1
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 4.0e-254 881.3 535 82.8
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 2.6e-253 878.6 576 78.0
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 4.4e-253 877.9 521 83.3
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 5.7e-253 877.5 529 82.4
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 5.7e-253 877.5 532 83.1
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 1.7e-252 875.9 573 79.6
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 3.7e-252 874.8 572 78.0
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 6.3e-252 874.0 518 83.4
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 8.3e-252 873.6 554 79.6
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 8.3e-252 873.6 539 81.1
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.1e-251 873.2 571 78.5
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 1.4e-251 872.8 554 79.4
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.8e-251 872.5 534 81.5
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 1.8e-251 872.5 570 78.4
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 2.4e-251 872.1 521 82.9
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 5.4e-251 870.9 574 77.7
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 7.0e-251 870.5 535 81.1
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 1.2e-250 869.8 532 82.1
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 1.6e-250 869.4 532 81.4
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 4.5e-250 867.8 563 78.0
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 4.5e-250 867.8 563 78.0
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 5.9e-250 867.5 563 78.0
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 7.7e-250 867.1 562 77.8
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 1.0e-249 866.7 523 82.8
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 1.3e-249 866.3 573 76.8
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 1.3e-249 866.3 563 77.8
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 1.3e-249 866.3 563 77.8
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 1.3e-249 866.3 563 77.8
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 1.7e-249 865.9 563 77.6
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 3.8e-249 864.8 535 81.5
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 5.0e-249 864.4 563 77.6
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 5.0e-249 864.4 574 77.0
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 6.5e-249 864.0 562 78.3
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 6.5e-249 864.0 563 77.4
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 8.6e-249 863.6 579 76.3
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 1.5e-248 862.8 549 79.6
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 4.2e-248 861.3 582 77.3
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 5.5e-248 860.9 563 77.8
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.5e-248 860.9 562 78.1
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 2.1e-247 859.0 566 78.6
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 4.7e-247 857.8 526 81.7
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.7e-247 857.8 563 78.5
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 4.7e-247 857.8 546 80.2
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 3.4e-245 851.7 561 76.5
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.7e-245 850.9 576 77.1
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 9.8e-245 850.1 531 79.8
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 9.8e-245 850.1 582 74.9
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.7e-244 849.4 538 79.9
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.8e-244 848.6 576 77.3
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 4.9e-244 847.8 538 79.4
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 1.8e-243 845.9 540 78.0
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 7.0e-243 844.0 592 73.5
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 9.2e-243 843.6 544 78.1
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.6e-242 842.8 521 80.4
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 2.7e-242 842.0 568 76.1
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 3.8e-241 838.2 542 78.6
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 3.8e-241 838.2 540 78.3
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 1.9e-240 835.9 566 75.8
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 8.0e-239 830.5 542 78.0
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 8.0e-239 830.5 541 77.6
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 8.3e-236 820.5 528 78.0
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 2.0e-234 815.8 541 77.3
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 6.6e-233 810.8 473 85.4
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 3.3e-232 808.5 567 73.9
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 5.6e-232 807.7 531 77.2
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 2.8e-231 805.4 469 85.1
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 4.0e-230 801.6 581 75.7
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 5.8e-229 797.7 492 82.1
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 1.1e-222 776.9 550 71.3
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 7.5e-221 770.8 572 71.5
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 7.8e-218 760.8 468 82.9
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 6.6e-217 757.7 499 74.3
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 1.1e-214 750.4 503 73.2
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 2.2e-212 742.7 522 70.3
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 4.1e-211 738.4 521 72.6
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 3.2e-203 712.2 405 87.2
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 5.4e-203 711.4 421 82.4
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 2.1e-202 709.5 546 70.1
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 3.3e-200 702.2 526 70.2
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 5.6e-200 701.4 416 82.7
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 8.1e-199 697.6 510 68.2
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 3.9e-193 678.7 574 64.8
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 6.7e-193 677.9 503 66.8
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 1.5e-184 650.2 524 60.9
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 4.8e-183 645.2 460 69.8
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 3.8e-180 635.6 537 65.7
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 3.8e-180 635.6 520 62.7
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 2.9e-164 582.8 320 89.4
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 8.8e-161 571.2 532 60.2
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 5.3e-158 562.0 534 57.3
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 2.6e-157 559.7 346 83.2
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 4.5e-157 558.9 424 65.6
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 3.8e-156 555.8 507 60.6
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 7.0e-150 535.0 495 57.8
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 9.1e-150 534.6 496 58.3
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.2e-149 534.3 495 57.6
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 7.5e-136 488.4 331 71.6
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 4.1e-126 456.1 500 48.2
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 9.2e-126 454.9 492 51.4
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 2.9e-111 406.8 604 46.2
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 2.0e-104 384.0 546 40.8
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.4e-95 352.4 428 48.1
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 6.4e-87 325.9 423 41.1
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.5e-83 313.9 346 53.5
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 4.6e-69 266.5 161 84.5
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.3e-68 264.2 177 72.3
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 3.0e-68 263.8 531 38.0
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.2e-62 243.8 256 52.7
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 7.2e-54 216.1 413 37.8
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 1.2e-48 198.7 136 72.1
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.5e-48 198.4 478 34.3
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 3.7e-42 177.2 105 80.0
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 7.0e-41 172.9 118 78.8
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 1.3e-39 168.7 106 84.0
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 7.2e-30 136.3 78 83.3
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.2e-29 135.6 124 63.7
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 3.0e-28 131.0 141 51.8
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 1.5e-27 128.6 77 83.1
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 1.2e-21 109.0 70 82.9
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 3.6e-21 107.5 76 68.4
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 2.4e-17 94.7 71 70.4
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 2.7e-16 91.3 54 83.3
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 5.9e-16 90.1 60 75.0
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 1.3e-15 89.0 76 51.3
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 2.9e-15 87.8 48 89.6
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 6.8e-12 76.6 53 71.7
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.2e-11 75.9 49 77.6
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 3.7e-10 70.9 98 45.9
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 3.7e-10 70.9 43 79.1
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 2.0e-08 65.1 52 61.5
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 7.8e-08 63.2 52 59.6
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 3.9e-07 60.8 55 54.5
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 3.9e-07 60.8 44 61.4
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 1.9e-06 58.5 139 38.1


User provided reference genes

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