Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 1.9e-124 449.1 222 100.0
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 3.1e-122 441.8 222 97.7
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 8.4e-120 433.7 228 94.3
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.3e-112 409.8 222 87.8
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.9e-111 406.0 222 88.3
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 8.2e-107 390.6 224 85.7
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 1.3e-99 366.7 224 79.5
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 4.5e-65 251.9 222 57.7
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 4.5e-65 251.9 219 56.6
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.5e-63 246.9 220 55.5
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 9.5e-63 244.2 219 55.3
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 5.2e-61 238.4 221 55.2
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 5.7e-60 235.0 221 55.2
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 9.8e-60 234.2 219 53.9
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 2.8e-59 232.6 221 54.8
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 1.2e-57 227.3 213 52.6
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 4.5e-57 225.3 222 51.8
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 7.7e-57 224.6 219 53.4
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.0e-56 224.2 221 53.4
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.3e-56 223.8 221 51.1
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 1.3e-56 223.8 221 51.1
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.7e-56 223.4 221 51.6
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 2.3e-56 223.0 221 50.2
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 2.3e-56 223.0 219 53.0
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 2.9e-56 222.6 222 53.2
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 5.0e-56 221.9 219 53.0
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 6.6e-56 221.5 220 52.3
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 1.1e-55 220.7 219 53.0
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 1.9e-55 219.9 216 53.2
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 1.9e-55 219.9 219 52.1
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 4.3e-55 218.8 219 53.4
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 5.6e-55 218.4 220 52.3
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 5.6e-55 218.4 217 53.5
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 5.6e-55 218.4 221 50.2
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 7.3e-55 218.0 225 51.6
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.2e-54 217.2 219 51.6
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.2e-54 217.2 221 49.8
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 2.8e-54 216.1 219 51.1
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 2.8e-54 216.1 220 50.9
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 3.6e-54 215.7 210 52.4
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 6.1e-54 214.9 225 48.4
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 1.0e-53 214.2 221 50.2
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 2.3e-53 213.0 220 50.0
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 3.0e-53 212.6 222 48.6
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 4.0e-53 212.2 223 48.9
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 5.2e-53 211.8 214 50.0
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 5.2e-53 211.8 219 49.3
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 6.8e-53 211.5 214 51.9
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 1.5e-52 210.3 222 49.5
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 5.7e-52 208.4 220 49.5
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 5.7e-52 208.4 223 49.3
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 7.5e-52 208.0 214 51.4
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 9.8e-52 207.6 220 49.5
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.9e-51 206.1 220 49.1
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.7e-51 205.7 220 49.1
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 4.9e-51 205.3 220 48.6
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 6.4e-51 204.9 221 50.7
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 8.3e-51 204.5 221 49.3
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 1.4e-50 203.8 213 50.2
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 1.4e-50 203.8 205 54.1
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 1.4e-50 203.8 219 50.7
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 2.4e-50 203.0 223 53.8
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 3.2e-50 202.6 222 48.6
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 7.0e-50 201.4 233 48.1
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 9.2e-50 201.1 213 47.4
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 9.2e-50 201.1 213 49.8
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.2e-49 200.7 222 48.2
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 1.6e-49 200.3 222 47.7
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 2.0e-49 199.9 160 58.1
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 4.6e-49 198.7 219 47.5
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 7.8e-49 198.0 218 48.2
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 7.8e-49 198.0 216 49.1
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.3e-48 197.2 216 49.5
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 1.3e-48 197.2 217 48.4
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 1.7e-48 196.8 224 48.2
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 1.7e-48 196.8 224 48.2
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.7e-48 196.8 213 48.8
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.7e-48 196.8 219 47.5
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.3e-48 196.4 222 49.1
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 3.0e-48 196.1 216 48.6
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 3.9e-48 195.7 223 48.9
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 6.6e-48 194.9 214 49.5
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 6.6e-48 194.9 215 49.8
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.1e-47 194.1 215 49.3
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.1e-47 194.1 216 48.1
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 1.9e-47 193.4 207 49.3
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.9e-47 193.4 221 47.1
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 2.5e-47 193.0 213 50.2
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 2.5e-47 193.0 222 49.1
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 3.3e-47 192.6 219 50.2
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 4.3e-47 192.2 213 48.8
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 4.3e-47 192.2 213 48.8
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 4.3e-47 192.2 216 50.0
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 5.6e-47 191.8 213 48.8
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 5.6e-47 191.8 213 48.8
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 5.6e-47 191.8 223 49.3
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 5.6e-47 191.8 220 47.3
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 5.6e-47 191.8 215 48.4
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.2e-46 190.7 219 48.9
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 1.2e-46 190.7 213 48.4
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 1.6e-46 190.3 215 47.9
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.6e-46 190.3 215 49.3
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 2.1e-46 189.9 215 47.9
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 3.6e-46 189.1 219 49.3
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 6.2e-46 188.3 222 45.0
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.8e-45 186.8 236 44.5
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 1.8e-45 186.8 222 49.1
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 1.8e-45 186.8 204 50.5
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 3.1e-45 186.0 227 46.3
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 3.1e-45 186.0 215 47.4
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 4.0e-45 185.7 217 49.3
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 5.2e-45 185.3 215 46.0
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 5.2e-45 185.3 167 55.1
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 8.9e-45 184.5 206 51.0
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 8.9e-45 184.5 219 48.9
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 8.9e-45 184.5 165 51.5
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 8.9e-45 184.5 214 48.6
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 8.9e-45 184.5 206 49.5
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 2.6e-44 183.0 213 46.5
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 3.4e-44 182.6 225 44.9
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 7.5e-44 181.4 221 45.7
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 1.3e-43 180.6 213 46.9
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 1.3e-43 180.6 213 46.9
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 1.7e-43 180.3 201 48.8
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 1.7e-43 180.3 216 44.9
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 2.2e-43 179.9 216 47.7
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 3.7e-43 179.1 171 53.8
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 4.9e-43 178.7 213 45.5
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.9e-42 176.8 214 47.7
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 2.4e-42 176.4 221 46.6
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 2.4e-42 176.4 221 47.5
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 3.2e-42 176.0 213 47.9
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 3.2e-42 176.0 213 47.9
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 4.1e-42 175.6 219 47.9
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 7.0e-42 174.9 144 59.7
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 4.6e-41 172.2 224 44.6
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 4.6e-41 172.2 201 46.8
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 7.8e-41 171.4 173 53.2
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 1.0e-40 171.0 226 44.2
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 1.0e-40 171.0 220 44.5
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 1.0e-40 171.0 135 61.5
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 3.0e-40 169.5 175 50.3
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 1.1e-39 167.5 235 42.6
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.1e-39 167.5 214 43.5
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 5.6e-39 165.2 173 49.7
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 9.5e-39 164.5 165 49.7
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.6e-38 162.5 213 41.8
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.8e-37 160.2 190 48.9
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 5.2e-37 158.7 245 42.0
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 6.8e-37 158.3 162 52.5
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 1.2e-36 157.5 222 39.6
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 2.6e-36 156.4 132 56.1
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 3.4e-36 156.0 187 45.5
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 7.5e-36 154.8 144 52.8
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 4.9e-35 152.1 207 44.0
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.6e-33 147.1 163 49.1
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 6.0e-33 145.2 219 37.9
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 6.6e-32 141.7 113 58.4
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 2.5e-31 139.8 198 40.9
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 6.2e-30 135.2 218 35.3
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.1e-29 134.4 222 39.2
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 3.1e-29 132.9 108 52.8
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 2.6e-28 129.8 213 36.6
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 5.8e-28 128.6 167 41.3
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 5.4e-26 122.1 139 48.9
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 1.2e-25 120.9 159 45.3
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 8.6e-24 114.8 214 37.4
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.1e-23 114.4 273 31.9
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 4.7e-22 109.0 74 64.9
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.8e-21 107.1 88 56.8
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 3.1e-21 106.3 211 36.0
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 1.2e-20 104.4 214 34.6
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 1.3e-19 100.9 213 34.3
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 2.2e-19 100.1 225 34.2
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 2.2e-19 100.1 225 34.2
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 3.3e-15 86.3 55 69.1
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 3.4e-12 76.3 52 65.4
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 2.9e-11 73.2 46 67.4


User provided reference genes

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