Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g034240 Solanum pennellii HOM05D007629 ORTHO05D009511 2.4e-30 135.6 113 100.0
CAN.G1560.3 Capsicum annuum HOM05D007629 ORTHO05D009511 6.8e-25 117.5 110 74.5
Nitab4.5_0001186g0030 Nicotiana tabacum HOM05D007629 ORTHO05D009511 3.7e-23 111.7 112 67.0
PGSC0003DMG400006802 Solanum tuberosum HOM05D007629 ORTHO05D009511 3.2e-22 108.6 112 68.8
Peaxi162Scf00953g00011 Petunia axillaris HOM05D007629 ORTHO05D009511 1.2e-21 106.7 112 53.6
Nitab4.5_0026617g0010 Nicotiana tabacum HOM05D007629 ORTHO05D009511 4.6e-21 104.8 112 59.8
Solyc01g087180.4 Solanum lycopersicum HOM05D007629 ORTHO05D009511 4.6e-21 104.8 113 69.0
Dinv43443 Davidia involucrata HOM05D007629 ORTHO05D009511 1.1e-11 73.6 111 55.0
ECA234G2567 Erigeron canadensis HOM05D007629 ORTHO05D009511 2.5e-11 72.4 104 42.3
HanXRQChr17g0562961 Helianthus annuus HOM05D007629 ORTHO05D009511 9.5e-11 70.5 44 70.5
TAR369G1117 Trochodendron aralioides HOM05D007629 ORTHO05D009511 9.5e-11 70.5 48 68.8
Actinidia20665 Actinidia chinensis HOM05D007629 ORTHO05D009511 1.1e-09 67.0 43 72.1
Manes.07G006300 Manihot esculenta HOM05D007629 ORTHO05D009511 1.1e-09 67.0 48 66.7
Oeu010795.1 Olea europaea HOM05D007629 ORTHO05D009511 1.1e-09 67.0 47 66.0
arahy.Tifrunner.gnm1.ann1.CVX1Z9 Arachis hypogaea HOM05D007629 ORTHO05D009511 3.1e-09 65.5 48 64.6
RcHm_v2.0_Chr1g0316061 Rosa chinensis HOM05D007629 ORTHO05D009511 3.1e-09 65.5 104 37.5
Lsat_1_v5_gn_4_31601 Lactuca sativa HOM05D007629 ORTHO05D009511 4.0e-09 65.1 48 64.6
arahy.Tifrunner.gnm1.ann1.4N8Z75 Arachis hypogaea HOM05D007629 ORTHO05D009511 5.2e-09 64.7 48 64.6
EL10Ac2g04331 Beta vulgaris HOM05D007629 ORTHO05D009511 6.8e-09 64.3 108 36.1
Cfa010767 Carpinus fangiana HOM05D007629 ORTHO05D009511 6.8e-09 64.3 48 66.7
Atru.chr11.2627 Acer truncatum HOM05D007629 ORTHO05D009511 1.2e-08 63.5 43 67.4
PGR031G1171 Punica granatum HOM05D007629 ORTHO05D009511 1.2e-08 63.5 48 56.2
Actinidia21549 Actinidia chinensis HOM05D007629 ORTHO05D009511 1.5e-08 63.2 103 38.8
FAN01G0239 Fragaria x ananassa HOM05D007629 ORTHO05D009511 1.5e-08 63.2 48 62.5
COL.COLO4_04855 Corchorus olitorius HOM05D000074 ORTHO05D000220 2.0e-08 62.8 48 60.4
FAN03G3264 Fragaria x ananassa HOM05D007629 ORTHO05D009511 2.0e-08 62.8 104 37.5
Lalb_Chr01g0008051 Lupinus albus HOM05D007629 ORTHO05D009511 2.6e-08 62.4 48 62.5
PSO764G0291 Papaver somniferum HOM05D007629 ORTHO05D009511 2.6e-08 62.4 104 54.8
PSO832G4302 Papaver somniferum HOM05D007629 ORTHO05D009511 2.6e-08 62.4 104 54.8
Glyma.13G202600 Glycine max HOM05D007629 ORTHO05D009511 4.4e-08 61.6 43 67.4
SGA_v2.0_scaffold24G10674 Striga asiatica HOM05D007629 ORTHO05D009511 4.4e-08 61.6 44 56.8
FvH4_7g01080 Fragaria vesca HOM05D007629 ORTHO05D009511 5.8e-08 61.2 48 60.4
FAN06G2853 Fragaria x ananassa HOM05D007629 ORTHO05D009511 5.8e-08 61.2 48 60.4
Prupe.2G013500 Prunus persica HOM05D007629 ORTHO05D009511 5.8e-08 61.2 43 65.1
Sed0004901 Sechium edule HOM05D007629 ORTHO05D009511 7.5e-08 60.8 48 54.2
CANSAT80G2723 Cannabis sativa HOM05D007629 ORTHO05D009511 9.9e-08 60.5 48 60.4
Cc02_g27970 Coffea canephora HOM05D007629 ORTHO05D009511 9.9e-08 60.5 40 67.5
Duzib138G1419 Durio zibethinus HOM05D007629 ORTHO05D009511 1.7e-07 59.7 48 60.4
MD07G1011000 Malus domestica HOM05D007629 ORTHO05D009511 1.7e-07 59.7 42 64.3
Nn7g36205 Nelumbo nucifera HOM05D007629 ORTHO05D009511 2.2e-07 59.3 44 61.4
DCAR_029669 Daucus carota HOM05D007629 ORTHO05D009511 2.9e-07 58.9 112 37.5
Migut.N01599 Erythranthe guttata HOM05D007629 ORTHO05D009511 2.9e-07 58.9 48 52.1
Eucgr.G03381 Eucalyptus grandis HOM05D007629 ORTHO05D009511 2.9e-07 58.9 48 56.2
CSS0036847 Camellia sinensis var. sinensis HOM05D007629 ORTHO05D009511 3.7e-07 58.5 39 74.4
MELO3C023979.2 Cucumis melo HOM05D007629 ORTHO05D009511 3.7e-07 58.5 47 53.2
CsaV3_3G032130 Cucumis sativus L. HOM05D007629 ORTHO05D009511 3.7e-07 58.5 47 53.2
ClCG10G012340 Citrullus lanatus HOM05D007629 ORTHO05D009511 4.9e-07 58.2 44 54.5
Sabra16G0163500 Salix brachista HOM05D007629 ORTHO05D009511 4.9e-07 58.2 44 63.6
Atru.chr11.2625 Acer truncatum HOM05D007629 ORTHO05D009511 1.1e-06 57.0 45 62.2
Ciclev10033658m.g Citrus clementina HOM05D007629 ORTHO05D009511 1.1e-06 57.0 42 61.9
Rhsim01G0129300 Rhododendron simsii HOM05D007629 ORTHO05D009511 1.1e-06 57.0 44 61.4
CiPaw.13G005200 Carya illinoinensis HOM05D007629 ORTHO05D009511 1.9e-06 56.2 48 64.6
Thecc.01G410700 Theobroma cacao HOM05D007629 ORTHO05D009511 1.9e-06 56.2 40 62.5
GSVIVG01032094001 Vitis vinifera HOM05D007629 ORTHO05D009511 1.9e-06 56.2 44 65.9
Gohir.A08G053900 Gossypium hirsutum HOM05D007629 ORTHO05D009511 2.4e-06 55.8 42 59.5
Aqoxy2G00135 Aquilegia oxysepala HOM05D007629 ORTHO05D009511 4.1e-06 55.1 41 63.4
Ca_23857_v3 Cicer arietinum L. HOM05D007629 ORTHO05D009511 4.1e-06 55.1 48 56.2
Gohir.D08G063600 Gossypium hirsutum HOM05D007629 ORTHO05D009511 5.4e-06 54.7 40 60.0
Gorai.004G065600 Gossypium raimondii HOM05D007629 ORTHO05D009511 5.4e-06 54.7 40 60.0
Phvul.011G211600 Phaseolus vulgaris HOM05D007629 ORTHO05D009511 5.4e-06 54.7 43 58.1
Psat4g149000 Pisum sativum HOM05D007629 ORTHO05D009511 5.4e-06 54.7 35 74.3
BcaC05g24715 Brassica carinata HOM05D007629 ORTHO05D009511 9.2e-06 53.9 39 61.5
BolC5t29361H Brassica oleracea HOM05D000280 ORTHO05D000632 9.2e-06 53.9 39 61.5


User provided reference genes

Program Settings