Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 0.0e+00 2446.4 1216 100.0
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 0.0e+00 2372.0 1216 96.6
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 0.0e+00 1722.6 1237 71.8
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 0.0e+00 1652.5 1215 70.3
CAN.G1820.1 Capsicum annuum HOM05D005395 ORTHO05D006352 0.0e+00 1527.3 995 77.8
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 0.0e+00 1473.0 1239 63.6
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 2.1e-305 1052.7 1329 46.2
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 1.7e-302 1043.1 1323 46.7
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 1.5e-298 1030.0 1285 46.1
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 2.1e-297 1026.2 1275 47.5
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 3.5e-292 1008.8 1269 46.1
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 5.9e-292 1008.1 1305 46.7
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 1.6e-289 1000.0 1283 46.1
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 1.8e-285 986.5 1289 46.0
QL02p026227 Quercus lobata HOM05D005395 ORTHO05D006352 2.0e-284 983.0 1264 45.9
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 1.2e-281 973.8 1288 45.3
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 2.1e-281 973.0 1339 44.2
QL12p011919 Quercus lobata HOM05D005395 ORTHO05D006352 5.2e-280 968.4 1237 46.6
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 7.5e-279 964.5 1312 43.5
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 2.3e-275 953.0 1277 44.0
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 2.9e-275 952.6 1277 44.0
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 9.5e-274 947.6 1343 42.4
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 1.2e-273 947.2 1279 43.8
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 3.6e-273 945.7 1286 44.3
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 1.4e-272 943.7 1222 46.2
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 3.1e-272 942.6 1287 43.6
Phvul.005G021500 Phaseolus vulgaris HOM05D005395 ORTHO05D006352 2.6e-271 939.5 1282 44.1
Psat5g193800 Pisum sativum HOM05D005395 ORTHO05D006352 9.8e-271 937.6 1289 43.1
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 1.7e-270 936.8 1283 44.0
Sed0006979 Sechium edule HOM05D005395 ORTHO05D006352 1.1e-269 934.1 1270 44.3
CANSAT78G1614 Cannabis sativa HOM05D005395 ORTHO05D006352 2.4e-269 932.9 1283 44.2
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 1.0e-267 927.5 1284 43.6
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 1.8e-264 916.8 1285 43.3
Manes.10G091300 Manihot esculenta HOM05D005395 ORTHO05D006352 1.2e-263 914.1 1269 43.9
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 4.4e-263 912.1 1293 42.8
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 1.0e-259 901.0 1255 42.5
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 1.1e-258 897.5 1267 43.3
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 1.2e-255 887.5 1261 43.3
Lj7C570T8 Lonicera japonica HOM05D005395 ORTHO05D006352 2.4e-253 879.8 1030 48.5
HanXRQChr12g0379891 Helianthus annuus HOM05D005395 ORTHO05D006352 7.8e-252 874.8 1221 42.5
Hund24995 Selenicereus undatus HOM05D005395 ORTHO05D006352 1.1e-250 870.9 1280 41.1
Aqoxy1G02896 Aquilegia oxysepala HOM05D005395 ORTHO05D006352 2.5e-250 869.8 1298 40.3
Gohir.D04G018600 Gossypium hirsutum HOM05D005395 ORTHO05D006352 4.3e-242 842.4 1244 41.5
Gorai.012G022200 Gossypium raimondii HOM05D005395 ORTHO05D006352 3.6e-241 839.3 1244 41.3
Gohir.A05G396700 Gossypium hirsutum HOM05D005395 ORTHO05D006352 1.2e-239 834.3 1243 41.5
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 5.8e-239 832.0 1281 41.8
Migut.B01303 Erythranthe guttata HOM05D005395 ORTHO05D006352 1.0e-235 821.2 1140 43.5
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 1.5e-234 817.4 1251 41.4
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 3.6e-233 812.8 1282 38.6
EL10Ac1g02254 Beta vulgaris HOM05D005395 ORTHO05D006352 1.1e-232 811.2 1324 38.6
Thecc.10G136000 Theobroma cacao HOM05D005395 ORTHO05D006352 3.4e-231 806.2 1088 44.1
MBI03_g07304_MAGBIO Magnolia biondii HOM05D005395 ORTHO05D006352 7.6e-231 805.1 1455 37.2
CiPaw.13G004500 Carya illinoinensis HOM05D005395 ORTHO05D006352 1.6e-228 797.3 992 47.2
PGR042G3169 Punica granatum HOM05D005395 ORTHO05D006352 3.7e-225 786.2 1298 39.3
AUR62041247 Chenopodium quinoa HOM05D005395 ORTHO05D006352 3.1e-224 783.1 1299 38.2
unitig_0.g1385 Utricularia gibba HOM05D005395 ORTHO05D006352 2.0e-223 780.4 1246 40.4
COL.COLO4_04642 Corchorus olitorius HOM05D005395 ORTHO05D006352 1.4e-216 757.7 1279 39.9
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 1.5e-215 754.2 1293 38.3
AT5G16850 Arabidopsis thaliana HOM05D005395 ORTHO05D006352 1.8e-200 704.1 1235 38.3
CARHR196310 Cardamine hirsuta HOM05D005395 ORTHO05D006352 3.4e-199 699.9 1238 38.0
Sp6g27270 Schrenkiella parvula HOM05D005395 ORTHO05D006352 5.0e-198 696.0 1236 38.1
Migut.B01025 Erythranthe guttata HOM05D005395 ORTHO05D006352 2.7e-196 690.3 872 45.4
vmacro13663 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 2.3e-195 687.2 854 46.3
Carub.0006s1507 Capsella rubella HOM05D005395 ORTHO05D006352 3.9e-195 686.4 1237 37.7
DCAR_005449 Daucus carota HOM05D005395 ORTHO05D006352 2.0e-194 684.1 856 45.0
BraA10t44297Z Brassica rapa HOM05D005395 ORTHO05D006352 1.3e-193 681.4 1236 37.5
Aa31sc160G20 Aethionema arabicum HOM05D005395 ORTHO05D006352 1.4e-192 677.9 1268 36.0
A10p22380 Brassica napus HOM05D005395 ORTHO05D006352 1.4e-192 677.9 1241 38.0
Ca_14376_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 2.4e-192 677.2 840 45.0
C09p60230 Brassica napus HOM05D005395 ORTHO05D006352 1.2e-191 674.9 1238 37.0
BolC9t58856H Brassica oleracea HOM05D005395 ORTHO05D006352 3.8e-190 669.8 1238 36.9
Thhalv10012498m.g Eutrema salsugineum HOM05D005395 ORTHO05D006352 2.0e-186 657.5 1238 37.1
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 7.0e-184 649.0 1106 38.7
Sc04g0005700 Simmondsia chinensis HOM05D005395 ORTHO05D006352 2.9e-174 617.1 823 43.3
Atru.chr11.730 Acer truncatum HOM05D005395 ORTHO05D006352 8.5e-174 615.5 879 42.5
AUR62014136 Chenopodium quinoa HOM05D005395 ORTHO05D006352 1.7e-169 601.3 1446 31.4
CsaV3_3G032200 Cucumis sativus L. HOM05D005395 ORTHO05D006352 2.7e-159 567.4 906 40.0
BcaC04g18841 Brassica carinata HOM05D005395 ORTHO05D006352 1.9e-157 561.2 1226 34.5
Lsat_1_v5_gn_4_31580 Lactuca sativa HOM05D005395 ORTHO05D006352 8.6e-150 535.8 1097 35.1
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 3.1e-139 500.7 576 47.0
Pp3c1_42700 Physcomitrium patens HOM05D005395 ORTHO05D006352 5.1e-126 456.8 1338 29.0
Mapoly0009s0015 Marchantia polymorpha HOM05D005395 ORTHO05D006352 3.4e-122 444.1 1118 29.7
AagrBONN_evm.TU.Sc2ySwM_344.2351 Anthoceros agrestis HOM05D005395 ORTHO05D006352 2.1e-116 424.9 766 34.9
HPP92_011342 Vanilla planifolia HOM05D005395 ORTHO05D006352 2.8e-116 424.5 740 36.4
Lalb_Chr13g0291151 Lupinus albus HOM05D005395 ORTHO05D006352 1.1e-107 396.0 374 55.6
SHI19147 Sapria himalayana HOM05D005395 ORTHO05D006352 2.5e-104 384.8 861 33.2
ATR0681G222 Amborella trichopoda HOM05D005395 ORTHO05D006352 1.9e-101 375.2 891 32.1
vmacro19894 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 4.8e-100 370.5 479 45.1
Atru.chr11.731 Acer truncatum HOM05D005395 ORTHO05D006352 8.2e-100 369.8 373 52.8
TPR.G30923 Trifolium pratense HOM05D005395 ORTHO05D006352 1.3e-97 362.5 375 51.5
Hma1.2p1_0293F.1_g116170 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 3.6e-95 354.4 377 52.0
SHI19148 Sapria himalayana HOM05D005395 ORTHO05D006352 8.2e-92 343.2 378 48.4
Nitab4.5_0002179g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 9.4e-88 329.7 328 55.8
CAN.G1820.3 Capsicum annuum HOM05D005395 ORTHO05D006352 1.5e-85 322.4 200 76.5
Cpa.g.sc245.16 Carica papaya HOM05D005395 ORTHO05D006352 5.7e-85 320.5 322 50.3
Lalb_Chr13g0291141 Lupinus albus HOM05D005395 ORTHO05D006352 1.1e-77 296.2 398 42.7
QL05p050737 Quercus lobata HOM05D005395 ORTHO05D006352 4.7e-71 274.2 397 43.8
Hma1.2p1_0293F.1_g116180 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 6.7e-70 270.4 334 48.5
HPP92_011265 Vanilla planifolia HOM05D005395 ORTHO05D006352 1.6e-66 259.2 285 49.1
Dinv12038 Davidia involucrata HOM05D005395 ORTHO05D006352 5.2e-62 244.2 197 62.9
Lalb_Chr13g0291131 Lupinus albus HOM05D005395 ORTHO05D006352 8.3e-60 236.9 441 38.3
SEGI_22370 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.6e-58 232.6 345 40.0
SEGI_30633 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.6e-58 232.6 345 40.0
SEGI_03843 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.5e-56 226.1 468 32.7
MCO03G604 Micromonas commoda HOM05D005395 ORTHO05D006352 5.5e-56 224.2 953 24.4
Cpa.g.sc245.15 Carica papaya HOM05D005395 ORTHO05D006352 1.5e-53 216.1 258 47.7
Lj7P570T32 Lonicera japonica HOM05D005395 ORTHO05D006352 2.7e-50 205.3 187 58.8
PSO384G3069 Papaver somniferum HOM05D005395 ORTHO05D006352 3.2e-43 181.8 248 39.9
CDE07G0235 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 7.3e-40 170.6 305 39.0
SEGI_09183 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 7.3e-40 170.6 507 27.6
Cfa026815 Carpinus fangiana HOM05D005395 ORTHO05D006352 1.6e-39 169.5 554 25.6
BcaC04g18840 Brassica carinata HOM05D005395 ORTHO05D006352 1.3e-33 149.8 311 36.3
ATR0829G203 Amborella trichopoda HOM05D005395 ORTHO05D006352 1.6e-31 142.9 191 41.4
Cpa.g.sc245.13 Carica papaya HOM05D005395 ORTHO05D006352 2.1e-31 142.5 148 49.3
Cre04.g213652 Chlamydomonas reinhardtii HOM05D005395 ORTHO05D006352 2.3e-30 139.0 209 38.8
CBR_g45710 Chara braunii HOM05D005395 ORTHO05D006352 1.6e-26 126.3 186 39.8
Nitab4.5_0002179g0020 Nicotiana tabacum HOM05D005395 ORTHO05D006352 1.1e-24 120.2 133 54.1
CBR_g45714 Chara braunii HOM05D005395 ORTHO05D006352 8.9e-22 110.5 344 27.0
Lsat_1_v5_gn_3_2761 Lactuca sativa HOM05D005395 ORTHO05D006352 2.0e-21 109.4 236 36.4
CDE07G1503 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 2.9e-20 105.5 136 41.2
Os12g0293100 Oryza sativa ssp. japonica HOM05D005395 ORTHO05D006352 4.1e-19 101.7 313 31.0
Ca_14375_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 1.2e-15 90.1 344 27.6
SEGI_37340 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 3.6e-15 88.6 150 32.7
PSO384G2197 Papaver somniferum HOM05D005395 ORTHO05D006352 8.1e-15 87.4 79 49.4
Nitab4.5_0002179g0030 Nicotiana tabacum HOM05D005395 ORTHO05D006352 1.4e-14 86.7 93 53.8
Aa31sc690G30 Aethionema arabicum HOM05D005395 ORTHO05D006352 3.1e-14 85.5 94 46.8
SHI19146 Sapria himalayana HOM05D005395 ORTHO05D002065 4.9e-12 78.2 93 46.2
CSS0036458 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 1.1e-11 77.0 85 47.1
CSS0040942 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 1.4e-11 76.6 85 48.2
CSS0041236 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 4.2e-11 75.1 85 45.9
vmacro13662 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 4.2e-11 75.1 206 32.0
QL02p026296 Quercus lobata HOM05D005395 ORTHO05D006352 3.0e-09 68.9 71 46.5
CSS0042886 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 9.6e-08 63.9 85 42.4
DCAR_005448 Daucus carota HOM05D005395 ORTHO05D006352 1.3e-07 63.5 82 43.9
DCAR_024213 Daucus carota HOM05D005395 ORTHO05D006352 3.6e-07 62.0 82 42.7
BcaC06g35111 Brassica carinata HOM05D020491 ORTHO05D006352 1.4e-06 60.1 89 40.4
Rhsim02G0130700 Rhododendron simsii HOM05D007456 ORTHO05D009411 1.4e-06 60.1 37 75.7


User provided reference genes

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