Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 3.9e-152 541.6 299 100.0
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 5.6e-151 537.7 298 99.3
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 3.0e-144 515.4 299 88.6
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 6.4e-131 471.1 308 81.8
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 6.4e-123 444.5 311 74.3
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.2e-121 440.3 311 73.6
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 4.6e-121 438.3 312 73.7
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.4e-85 319.7 315 54.6
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 5.3e-85 318.5 315 53.7
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.0e-80 304.3 319 53.6
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 2.0e-79 300.1 304 54.9
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 2.6e-79 299.7 322 53.1
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 4.4e-79 298.9 312 54.5
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 4.4e-79 298.9 312 54.5
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 2.8e-78 296.2 325 52.0
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 3.7e-78 295.8 313 53.0
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 1.8e-77 293.5 310 51.0
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 4.1e-77 292.4 314 52.9
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 2.0e-76 290.0 311 52.4
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 4.2e-74 282.3 313 49.8
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 1.0e-72 277.7 325 50.8
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 5.7e-71 271.9 307 51.8
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.3e-70 270.8 308 51.3
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.7e-70 270.4 314 50.0
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 6.3e-70 268.5 323 51.1
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.4e-69 267.3 323 50.5
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.2e-68 264.2 316 49.1
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 1.6e-68 263.8 305 53.4
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 1.6e-68 263.8 312 50.6
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 7.7e-68 261.5 312 50.0
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 2.2e-67 260.0 306 51.3
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 3.8e-67 259.2 320 48.1
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 1.1e-66 257.7 320 47.8
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.9e-66 256.9 287 51.9
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 5.5e-66 255.4 287 51.6
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 9.4e-66 254.6 311 46.3
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 4.7e-65 252.3 254 53.5
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 3.0e-64 249.6 306 49.0
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 5.2e-64 248.8 203 65.0
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 7.5e-63 245.0 328 47.3
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 3.7e-62 242.7 336 44.6
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.6e-60 237.3 327 46.2
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 2.0e-60 236.9 317 46.7
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 2.2e-59 233.4 318 45.6
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.5e-58 230.7 318 42.8
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 1.5e-58 230.7 323 47.1
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 9.4e-58 228.0 291 47.4
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 1.2e-57 227.6 326 46.3
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 6.1e-57 225.3 315 43.5
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 2.3e-56 223.4 320 42.8
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 4.0e-56 222.6 321 44.2
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 5.2e-56 222.2 352 40.6
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 6.8e-56 221.9 318 44.3
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 2.6e-55 219.9 356 40.2
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 4.4e-55 219.2 341 41.6
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 7.5e-55 218.4 323 43.0
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.7e-54 217.2 308 42.2
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 2.8e-54 216.5 340 44.4
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.8e-54 216.5 348 40.5
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.8e-54 216.5 316 44.0
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 3.7e-54 216.1 317 42.3
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 3.7e-54 216.1 313 43.5
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 6.3e-54 215.3 305 44.6
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 1.8e-53 213.8 316 43.7
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 2.4e-53 213.4 319 42.6
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 2.4e-53 213.4 354 39.3
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 3.1e-53 213.0 346 41.3
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 5.4e-53 212.2 315 42.9
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 5.4e-53 212.2 311 50.5
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 1.6e-52 210.7 351 40.2
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.5e-52 209.5 351 39.9
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 5.9e-52 208.8 332 42.5
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 1.0e-51 208.0 356 39.3
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 5.0e-51 205.7 350 38.3
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 8.6e-51 204.9 351 39.6
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 8.6e-51 204.9 320 40.6
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 1.1e-50 204.5 323 42.7
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 1.9e-50 203.8 320 39.7
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 5.5e-50 202.2 344 40.1
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 9.5e-50 201.4 319 39.8
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 4.7e-49 199.1 308 45.5
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 1.0e-48 198.0 316 39.9
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 1.8e-48 197.2 265 45.7
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 6.8e-48 195.3 320 39.7
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 2.6e-47 193.4 311 41.2
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 7.5e-47 191.8 317 40.7
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 7.5e-47 191.8 317 40.7
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 1.3e-46 191.0 321 40.8
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 8.3e-46 188.3 347 38.0
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 1.4e-45 187.6 339 41.0
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 3.1e-45 186.4 343 37.6
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 3.1e-45 186.4 341 37.5
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 1.2e-44 184.5 343 38.8
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 2.0e-44 183.7 343 38.2
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 2.7e-44 183.3 345 43.5
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 5.9e-44 182.2 321 39.3
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 5.9e-44 182.2 323 36.5
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 1.3e-43 181.0 324 42.3
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 5.0e-43 179.1 307 41.7
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 6.6e-43 178.7 324 43.2
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 1.1e-42 177.9 340 38.2
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 1.9e-42 177.2 324 42.0
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 1.9e-42 177.2 324 42.0
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 2.5e-42 176.8 338 43.2
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 2.1e-41 173.7 239 44.4
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 1.4e-40 171.0 335 40.9
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 3.1e-40 169.9 335 40.9
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 2.2e-38 163.7 242 42.1
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 3.7e-38 162.9 240 41.2
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 4.9e-38 162.5 333 40.2
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 4.9e-38 162.5 333 40.2
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 1.4e-37 161.0 331 40.5
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 3.2e-37 159.8 252 41.3
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 3.5e-36 156.4 239 41.8
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 7.8e-36 155.2 304 38.2
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 7.8e-36 155.2 233 42.5
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 7.8e-36 155.2 303 36.6
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 1.7e-35 154.1 199 46.7
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 1.7e-35 154.1 237 41.4
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 6.6e-35 152.1 309 36.2
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.5e-34 151.0 228 39.0
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 1.9e-34 150.6 300 36.0
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 2.5e-34 150.2 232 40.9
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 5.6e-34 149.1 328 35.4
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 5.6e-34 149.1 328 35.4
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 7.3e-34 148.7 212 46.7
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 1.6e-33 147.5 328 35.1
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 2.8e-33 146.7 342 33.9
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 6.2e-33 145.6 325 36.3
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 1.1e-32 144.8 236 39.8
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 2.3e-32 143.7 238 37.8
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 3.1e-32 143.3 232 39.2
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 1.5e-31 141.0 315 34.3
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 3.4e-31 139.8 243 37.0
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.7e-30 137.5 239 36.8
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 2.9e-30 136.7 252 38.5
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 6.4e-30 135.6 232 39.2
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 1.1e-29 134.8 236 40.3
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 1.1e-29 134.8 246 39.4
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.4e-29 134.4 249 36.9
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 1.9e-29 134.0 219 40.2
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.2e-28 131.3 254 36.6
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 1.6e-28 131.0 237 37.6
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.6e-28 129.4 250 35.2
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 6.0e-28 129.0 255 37.3
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 1.0e-27 128.3 251 36.7
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 2.3e-27 127.1 210 40.0
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 6.6e-27 125.6 243 35.8
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 3.3e-26 123.2 240 36.2
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 1.2e-25 121.3 235 34.5
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.1e-25 120.6 196 40.3
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 3.6e-25 119.8 238 37.0
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 1.2e-23 114.8 257 33.5
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 1.7e-22 110.9 224 36.2
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 3.5e-20 103.2 90 55.6
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.9e-19 99.8 103 44.7
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 5.1e-19 99.4 102 44.1
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 8.6e-19 98.6 104 44.2
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 8.6e-19 98.6 104 44.2
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 2.1e-17 94.0 265 33.6
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 8.9e-16 88.6 124 41.1
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 5.1e-11 72.8 47 68.1
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 8.7e-11 72.0 173 34.1
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 5.6e-10 69.3 86 50.0
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 6.9e-08 62.4 51 52.9


User provided reference genes

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