Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g034120 Solanum pennellii HOM05D006848 ORTHO05D008445 1.7e-118 429.5 243 100.0
Solyc01g087040.2 Solanum lycopersicum HOM05D006848 ORTHO05D008445 1.1e-115 420.2 243 99.2
PGSC0003DMG400006872 Solanum tuberosum HOM05D006848 ORTHO05D008445 8.3e-113 410.6 243 89.7
CAN.G170.111 Capsicum annuum HOM05D006848 ORTHO05D008445 1.9e-101 372.9 247 81.8
Nitab4.5_0002477g0050 Nicotiana tabacum HOM05D006848 ORTHO05D008445 2.2e-97 359.4 247 80.2
Nitab4.5_0000634g0080 Nicotiana tabacum HOM05D006848 ORTHO05D008445 3.2e-96 355.5 245 81.6
Peaxi162Scf00347g00071 Petunia axillaris HOM05D006848 ORTHO05D008445 7.6e-90 334.3 243 78.6
Sabra09G0046200 Salix brachista HOM05D006848 ORTHO05D008445 6.4e-89 331.3 241 69.7
FvH4_7g00900 Fragaria vesca HOM05D006848 ORTHO05D008445 1.1e-88 330.5 223 79.8
Peaxi162Scf00428g00063 Petunia axillaris HOM05D006848 ORTHO05D008445 2.4e-88 329.3 180 89.4
Potri.009G062500 Populus trichocarpa HOM05D006848 ORTHO05D008445 7.1e-88 327.8 241 69.7
Hma1.2p1_0312F.1_g121500 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 2.7e-87 325.9 248 76.2
FAN10G1997 Fragaria x ananassa HOM05D006848 ORTHO05D008445 1.0e-86 323.9 229 78.6
Haze_03213 Corylus avellana HOM05D006848 ORTHO05D008445 1.1e-85 320.5 248 77.0
Cc02_g27800 Coffea canephora HOM05D006848 ORTHO05D008445 1.9e-85 319.7 177 87.0
COL.COLO4_23924 Corchorus olitorius HOM05D006848 ORTHO05D008445 1.9e-85 319.7 244 69.7
Ciclev10032624m.g Citrus clementina HOM05D006848 ORTHO05D008445 5.6e-85 318.2 241 68.9
Thecc.01G412000 Theobroma cacao HOM05D006848 ORTHO05D008445 5.6e-85 318.2 242 67.4
Duzib138G1675 Durio zibethinus HOM05D006848 ORTHO05D008445 1.6e-84 316.6 181 82.9
Sc10g0000020 Simmondsia chinensis HOM05D006848 ORTHO05D008445 2.1e-84 316.2 180 83.3
Rhsim07G0054800 Rhododendron simsii HOM05D006848 ORTHO05D008445 3.7e-84 315.5 248 74.6
Atru.chr11.2648 Acer truncatum HOM05D006848 ORTHO05D008445 4.8e-84 315.1 171 87.1
Gohir.A08G053600 Gossypium hirsutum HOM05D006848 ORTHO05D008445 4.8e-84 315.1 209 81.3
Gohir.D08G063100 Gossypium hirsutum HOM05D006848 ORTHO05D008445 4.8e-84 315.1 209 78.5
Gorai.004G065300 Gossypium raimondii HOM05D006848 ORTHO05D008445 4.8e-84 315.1 209 78.5
MD07G1008600 Malus domestica HOM05D006848 ORTHO05D008445 1.4e-83 313.5 215 79.5
Eucgr.G03390 Eucalyptus grandis HOM05D006848 ORTHO05D008445 5.3e-83 311.6 181 81.2
TWI53G1868 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 9.0e-83 310.8 242 68.2
Aqoxy3G03705 Aquilegia oxysepala HOM05D006848 ORTHO05D008445 1.2e-82 310.5 211 71.1
QL04p007215 Quercus lobata HOM05D006848 ORTHO05D008445 1.2e-82 310.5 180 83.3
VMungo1080G1360 Vigna mungo HOM05D006848 ORTHO05D008445 1.2e-82 310.5 209 74.2
Glyma.08G154300 Glycine max HOM05D006848 ORTHO05D008445 1.5e-82 310.1 217 72.8
CiPaw.13G004400 Carya illinoinensis HOM05D006848 ORTHO05D008445 2.6e-82 309.3 180 81.1
EL10Ac2g03652 Beta vulgaris HOM05D006848 ORTHO05D008445 3.4e-82 308.9 184 82.6
CANSAT80G2127 Cannabis sativa HOM05D006848 ORTHO05D008445 3.4e-82 308.9 245 66.1
Migut.B01319 Erythranthe guttata HOM05D006848 ORTHO05D008445 3.4e-82 308.9 248 71.4
vmacro13656 Vaccinium macrocarpon HOM05D006848 ORTHO05D008445 3.4e-82 308.9 242 70.2
Cpa.g.sc386.5 Carica papaya HOM05D006848 ORTHO05D008445 4.5e-82 308.5 212 73.6
Glyma.15G273300 Glycine max HOM05D006848 ORTHO05D008445 2.2e-81 306.2 219 72.6
Ca_14368_v3 Cicer arietinum L. HOM05D006848 ORTHO05D008445 4.9e-81 305.1 182 80.2
Lalb_Chr01g0015361 Lupinus albus HOM05D006848 ORTHO05D008445 4.9e-81 305.1 203 72.9
PGR031G3843 Punica granatum HOM05D006848 ORTHO05D008445 4.9e-81 305.1 249 72.7
TPR.G12217 Trifolium pratense HOM05D006848 ORTHO05D008445 4.9e-81 305.1 199 76.4
ClCG09G004240 Citrullus lanatus HOM05D006848 ORTHO05D008445 6.4e-81 304.7 248 62.1
MBI01_g27616_MAGBIO Magnolia biondii HOM05D006848 ORTHO05D008445 6.4e-81 304.7 179 81.6
Oeu036185.1 Olea europaea HOM05D006848 ORTHO05D008445 6.4e-81 304.7 246 74.8
TAR623G0094 Trochodendron aralioides HOM05D006848 ORTHO05D008445 6.4e-81 304.7 177 81.9
TAR623G0130 Trochodendron aralioides HOM05D006848 ORTHO05D008445 6.4e-81 304.7 177 81.9
Sed0006624 Sechium edule HOM05D006848 ORTHO05D008445 8.4e-81 304.3 233 66.5
Eucgr.H02489 Eucalyptus grandis HOM05D006848 ORTHO05D008445 1.1e-80 303.9 180 80.0
MD02G1313800 Malus domestica HOM05D006848 ORTHO05D008445 1.1e-80 303.9 249 69.5
Lj7A569T67 Lonicera japonica HOM05D006848 ORTHO05D008445 1.4e-80 303.5 172 84.9
CsaV3_7G031150 Cucumis sativus L. HOM05D006848 ORTHO05D008445 3.2e-80 302.4 247 63.2
Medtr3g028150 Medicago truncatula HOM05D006848 ORTHO05D008445 3.2e-80 302.4 177 80.2
MELO3C023542.2 Cucumis melo HOM05D006848 ORTHO05D008445 4.2e-80 302.0 179 79.3
Psat5g204320 Pisum sativum HOM05D006848 ORTHO05D008445 2.1e-79 299.7 171 82.5
TWI09G1547 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 3.5e-79 298.9 179 80.4
DCAR_029663 Daucus carota HOM05D006848 ORTHO05D008445 6.0e-79 298.1 179 80.4
RcHm_v2.0_Chr3g0473601 Rosa chinensis HOM05D006848 ORTHO05D008445 7.9e-79 297.7 199 76.4
AL5G46400 Arabidopsis lyrata HOM05D006848 ORTHO05D008445 1.0e-78 297.4 179 80.4
Phvul.005G020200 Phaseolus vulgaris HOM05D006848 ORTHO05D008445 1.0e-78 297.4 209 72.2
Carub.0005s3015 Capsella rubella HOM05D006848 ORTHO05D008445 1.8e-78 296.6 180 78.3
FAN01G1688 Fragaria x ananassa HOM05D006848 ORTHO05D008445 1.8e-78 296.6 223 74.0
PSO384G0049 Papaver somniferum HOM05D006848 ORTHO05D008445 2.3e-78 296.2 181 80.1
HanXRQChr01g0016151 Helianthus annuus HOM05D006848 ORTHO05D008445 5.1e-78 295.0 180 78.3
CARHR291430 Cardamine hirsuta HOM05D006848 ORTHO05D008445 6.7e-78 294.7 180 78.3
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 6.7e-78 294.7 180 78.3
PSO135G0340 Papaver somniferum HOM05D006848 ORTHO05D008445 1.9e-77 293.1 181 79.6
THA.LOC104819691 Tarenaya hassleriana HOM05D006848 ORTHO05D008445 1.9e-77 293.1 170 80.6
AUR62009377 Chenopodium quinoa HOM05D006848 ORTHO05D008445 3.3e-77 292.4 177 78.5
SalBow5G3403 Salvia bowleyana HOM05D006848 ORTHO05D008445 5.6e-77 291.6 241 66.0
BcaC01g04883 Brassica carinata HOM05D006848 ORTHO05D008445 4.8e-76 288.5 181 76.8
BolC3t15604H Brassica oleracea HOM05D006848 ORTHO05D008445 4.8e-76 288.5 181 76.8
Lsat_1_v5_gn_1_107841 Lactuca sativa HOM05D006848 ORTHO05D008445 8.2e-76 287.7 175 78.3
A03p27190 Brassica napus HOM05D006848 ORTHO05D008445 2.4e-75 286.2 181 76.2
BraA03t11932Z Brassica rapa HOM05D006848 ORTHO05D008445 2.4e-75 286.2 181 76.2
FAN06G1876 Fragaria x ananassa HOM05D006848 ORTHO05D008445 5.3e-75 285.0 217 74.7
Nn113s43373 Nelumbo nucifera HOM05D006848 ORTHO05D008445 9.0e-75 284.3 176 76.7
Nn2g15435 Nelumbo nucifera HOM05D006848 ORTHO05D008445 9.0e-75 284.3 176 76.7
Prupe.2G012000 Prunus persica HOM05D006848 ORTHO05D008445 9.0e-75 284.3 181 75.1
arahy.Tifrunner.gnm1.ann1.27LE56 Arachis hypogaea HOM05D006848 ORTHO05D008445 1.2e-74 283.9 179 76.5
arahy.Tifrunner.gnm1.ann1.9ZN1DC Arachis hypogaea HOM05D006848 ORTHO05D008445 1.2e-74 283.9 179 76.5
BcaB01g02988 Brassica carinata HOM05D006848 ORTHO05D008445 1.5e-74 283.5 170 80.0
SEGI_25651 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 2.9e-73 279.3 170 76.5
CDE05G1882 Ceratophyllum demersum HOM05D006848 ORTHO05D008445 1.9e-72 276.6 220 65.0
ATR0605G006 Amborella trichopoda HOM05D006848 ORTHO05D008445 7.1e-72 274.6 179 73.7
AUR62023058 Chenopodium quinoa HOM05D006848 ORTHO05D008445 1.6e-71 273.5 173 75.1
ECA248G3622 Erigeron canadensis HOM05D006848 ORTHO05D008445 2.3e-70 269.6 182 72.5
SGA_v2.0_scaffold167G38443 Striga asiatica HOM05D006848 ORTHO05D008445 8.7e-70 267.7 246 65.9
AagrBONN_evm.TU.Sc2ySwM_228.3199 Anthoceros agrestis HOM05D006848 ORTHO05D008445 1.5e-69 266.9 178 66.9
C03p32680 Brassica napus HOM05D006848 ORTHO05D008445 4.8e-68 261.9 162 79.0
Aa31LG10G17430 Aethionema arabicum HOM05D006848 ORTHO05D008445 2.4e-67 259.6 150 81.3
HPP92_007477 Vanilla planifolia HOM05D006848 ORTHO05D008445 4.1e-67 258.8 180 70.0
Sp1g00010 Schrenkiella parvula HOM05D006848 ORTHO05D008445 6.9e-67 258.1 171 74.3
Sp5g00040 Schrenkiella parvula HOM05D006848 ORTHO05D008445 6.9e-67 258.1 171 74.3
Zm00001eb034740 Zea mays HOM05D006848 ORTHO05D008445 1.5e-66 256.9 178 68.5
SMO217G0004 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 3.4e-66 255.8 175 66.9
SMO356G0122 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 3.4e-66 255.8 175 66.9
Thhalv10006361m.g Eutrema salsugineum HOM05D006848 ORTHO05D008445 5.0e-65 251.9 180 68.9
Manes.10G144600 Manihot esculenta HOM05D006848 ORTHO05D008445 1.6e-63 246.9 206 66.5
Lj1g0010524 Lotus japonicus HOM05D006848 ORTHO05D008445 2.1e-63 246.5 172 70.9
Os08g0504500 Oryza sativa ssp. japonica HOM05D006848 ORTHO05D008445 6.1e-63 245.0 169 69.2
Mapoly0075s0034 Marchantia polymorpha HOM05D006848 ORTHO05D008445 7.9e-63 244.6 177 64.4
Dinv43453 Davidia involucrata HOM05D006848 ORTHO05D008445 1.1e-61 240.7 136 86.0
Pp3c4_11800 Physcomitrium patens HOM05D006848 ORTHO05D008445 2.0e-61 240.0 175 64.0
AT3G63540 Arabidopsis thaliana HOM05D006848 ORTHO05D008445 3.1e-59 232.6 138 81.2
CBR_g23941 Chara braunii HOM05D006848 ORTHO05D008445 2.2e-57 226.5 175 61.1
Actinidia36713 Actinidia chinensis HOM05D006848 ORTHO05D008445 4.7e-55 218.8 132 79.5
Hma1.2p1_0137F.1_g062450 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 1.5e-45 187.2 124 75.8
RcHm_v2.0_Chr1g0315791 Rosa chinensis HOM05D006848 ORTHO05D008445 1.5e-45 187.2 120 73.3
CDE05G3657 Ceratophyllum demersum HOM05D000031 ORTHO05D008445 2.8e-44 183.0 124 71.0
Actinidia24670 Actinidia chinensis HOM05D006848 ORTHO05D008445 1.5e-37 160.6 105 77.1
MCO14G442 Micromonas commoda HOM05D006848 ORTHO05D008445 9.8e-29 131.3 167 43.1
SEGI_20764 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 4.2e-24 115.9 62 88.7
Cre03.g198850 Chlamydomonas reinhardtii HOM05D006848 ORTHO05D008445 2.8e-23 113.2 184 35.3
PRCOL_00004469 Prasinoderma coloniale HOM05D006848 ORTHO05D008445 8.6e-17 91.7 187 35.3
A04p00030 Brassica napus HOM05D006848 ORTHO05D008445 1.7e-09 67.4 55 58.2
Hund17393 Selenicereus undatus HOM05D006773 ORTHO05D008775 3.0e-09 66.6 152 29.6
DCAR_031498 Daucus carota HOM05D006773 ORTHO05D008775 6.6e-09 65.5 152 30.9
HanXRQChr05g0160801 Helianthus annuus HOM05D006773 ORTHO05D008775 8.6e-09 65.1 152 28.9
Ah.16g108660 Amaranthus hybridus HOM05D006773 ORTHO05D008775 1.5e-08 64.3 152 28.3
Oeu025718.1 Olea europaea HOM05D006773 ORTHO05D008775 1.9e-08 63.9 152 30.3
Lsat_1_v5_gn_6_96860 Lactuca sativa HOM05D006773 ORTHO05D008775 2.5e-08 63.5 152 28.3
ECA246G0400 Erigeron canadensis HOM05D006773 ORTHO05D005980 7.3e-08 62.0 152 27.6
QL09p028661 Quercus lobata HOM05D006773 ORTHO05D008775 7.3e-08 62.0 152 28.9
Solyc04g064670.3 Solanum lycopersicum HOM05D006773 ORTHO05D008775 9.5e-08 61.6 152 28.3
Sopen04g026630 Solanum pennellii HOM05D006773 ORTHO05D008775 9.5e-08 61.6 152 28.3
PGSC0003DMG401024815 Solanum tuberosum HOM05D006773 ORTHO05D008775 9.5e-08 61.6 152 28.3
Thecc.08G143200 Theobroma cacao HOM05D006773 ORTHO05D008775 9.5e-08 61.6 152 27.6
Cc10_g12990 Coffea canephora HOM05D006773 ORTHO05D008775 1.6e-07 60.8 152 27.6
ClCG09G009710 Citrullus lanatus HOM05D006773 ORTHO05D008775 2.1e-07 60.5 152 28.9
Lj7C363G2 Lonicera japonica HOM05D006773 ORTHO05D008775 2.1e-07 60.5 147 27.2
Duzib093G1219 Durio zibethinus HOM05D006773 ORTHO05D008775 2.8e-07 60.1 152 27.6
EL10Ac1g01469 Beta vulgaris HOM05D006773 ORTHO05D008775 3.6e-07 59.7 152 27.6
CAN.G2.47 Capsicum annuum HOM05D006773 ORTHO05D008775 3.6e-07 59.7 152 28.3
Nitab4.5_0004095g0010 Nicotiana tabacum HOM05D006773 ORTHO05D008775 3.6e-07 59.7 152 27.6
unitig_52.g17539 Utricularia gibba HOM05D006773 ORTHO05D008775 3.6e-07 59.7 152 26.3
MBI06_g35966_MAGBIO Magnolia biondii HOM05D006773 ORTHO05D008775 4.7e-07 59.3 152 27.0
Cfa018374 Carpinus fangiana HOM05D006773 ORTHO05D008775 6.2e-07 58.9 152 27.6
Nitab4.5_0000445g0090 Nicotiana tabacum HOM05D006773 ORTHO05D008775 6.2e-07 58.9 152 27.0
AUR62013482 Chenopodium quinoa HOM05D006773 ORTHO05D008775 8.0e-07 58.5 152 26.3
AUR62026790 Chenopodium quinoa HOM05D006773 ORTHO05D008775 8.0e-07 58.5 152 26.3
Peaxi162Scf00263g00028 Petunia axillaris HOM05D006773 ORTHO05D008775 8.0e-07 58.5 152 28.3
Sc20g0003340 Simmondsia chinensis HOM05D006773 ORTHO05D008775 8.0e-07 58.5 152 28.3
Migut.N03240 Erythranthe guttata HOM05D006773 ORTHO05D008775 1.1e-06 58.2 152 25.7
Eucgr.F02746 Eucalyptus grandis HOM05D006773 ORTHO05D008775 1.1e-06 58.2 152 28.9
ATR1136G180 Amborella trichopoda HOM05D006773 ORTHO05D008775 1.4e-06 57.8 152 27.0
MBI06_g41413_MAGBIO Magnolia biondii HOM05D006773 ORTHO05D008775 1.4e-06 57.8 152 27.0
MD10G1012400 Malus domestica HOM05D006773 ORTHO05D008775 1.4e-06 57.8 147 26.5
SMO270G0074 Selaginella moellendorffii HOM05D006773 ORTHO05D008775 1.4e-06 57.8 150 27.3
Atru.chr13.1690 Acer truncatum HOM05D006773 ORTHO05D008775 1.8e-06 57.4 152 27.6
Sed0012245 Sechium edule HOM05D006773 ORTHO05D008775 1.8e-06 57.4 152 28.3
CiPaw.15G022300 Carya illinoinensis HOM05D006773 ORTHO05D008775 2.3e-06 57.0 147 29.3
Os12g0190200 Oryza sativa ssp. japonica HOM05D006773 ORTHO05D008775 2.3e-06 57.0 152 27.0
HPP92_004476 Vanilla planifolia HOM05D006773 ORTHO05D008775 2.3e-06 57.0 146 29.5
Ciclev10002228m.g Citrus clementina HOM05D006773 ORTHO05D008775 3.1e-06 56.6 147 27.2
GSVIVG01010018001 Vitis vinifera HOM05D006773 ORTHO05D008775 3.1e-06 56.6 147 27.9
CsaV3_7G025030 Cucumis sativus L. HOM05D006773 ORTHO05D008775 4.0e-06 56.2 152 28.3
Lalb_Chr08g0240801 Lupinus albus HOM05D006773 ORTHO05D008775 4.0e-06 56.2 152 27.0
Mapoly0002s0218 Marchantia polymorpha HOM05D006773 ORTHO05D008775 4.0e-06 56.2 150 26.0
Nn5g28592 Nelumbo nucifera HOM05D006773 ORTHO05D008775 4.0e-06 56.2 151 26.5
arahy.Tifrunner.gnm1.ann1.61R3GI Arachis hypogaea HOM05D006773 ORTHO05D008775 5.2e-06 55.8 152 26.3
MD05G1012500 Malus domestica HOM05D006773 ORTHO05D008775 5.2e-06 55.8 147 26.5
SGA_v2.0_scaffold19G08634 Striga asiatica HOM05D006773 ORTHO05D008775 5.2e-06 55.8 152 26.3
THA.LOC104813693 Tarenaya hassleriana HOM05D006773 ORTHO05D008775 5.2e-06 55.8 147 26.5
vmacro00729 Vaccinium macrocarpon HOM05D006773 ORTHO05D008775 5.2e-06 55.8 147 26.5
Dinv25798 Davidia involucrata HOM05D006773 ORTHO05D008775 6.8e-06 55.5 152 27.0
MELO3C023682.2 Cucumis melo HOM05D006773 ORTHO05D008775 8.9e-06 55.1 152 28.3
Medtr3g089890 Medicago truncatula HOM05D006773 ORTHO05D008775 8.9e-06 55.1 152 26.3
MCO12G188 Micromonas commoda HOM05D006848 ORTHO05D008445 8.9e-06 55.1 187 28.9
Rhsim09G0002200 Rhododendron simsii HOM05D006773 ORTHO05D008775 8.9e-06 55.1 147 26.5


User provided reference genes

Program Settings