Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 1.9e-209 732.3 361 100.0
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.6e-205 719.2 361 98.1
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 2.8e-173 612.1 361 83.1
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 7.2e-169 597.4 360 80.8
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 6.3e-165 584.3 376 79.0
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.1e-164 582.0 348 81.9
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 1.7e-141 506.5 362 69.6
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 8.2e-141 504.2 363 69.7
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.6e-139 500.0 362 69.3
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 1.5e-134 483.4 358 67.3
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 4.8e-133 478.4 358 66.5
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.8e-132 476.5 363 66.1
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 2.0e-131 473.0 361 65.1
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 5.9e-131 471.5 359 65.2
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 1.7e-130 469.9 362 65.2
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 1.9e-129 466.5 364 64.3
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 1.9e-129 466.5 363 66.7
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 3.2e-129 465.7 364 64.0
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 6.1e-128 461.5 363 64.5
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 1.5e-126 456.8 376 62.8
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 2.6e-126 456.1 365 64.7
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 3.4e-126 455.7 361 65.1
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 7.5e-126 454.5 359 65.5
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 2.2e-125 453.0 359 65.2
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.8e-125 452.6 362 63.8
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 6.3e-125 451.4 365 63.8
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 1.1e-124 450.7 360 63.6
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 1.1e-124 450.7 365 64.1
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.1e-124 450.7 368 62.2
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 1.4e-124 450.3 363 63.1
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 1.4e-124 450.3 365 64.1
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 3.1e-124 449.1 361 62.3
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 4.1e-124 448.7 363 63.9
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 5.4e-124 448.4 358 64.8
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 5.4e-124 448.4 362 63.3
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 5.4e-124 448.4 362 61.6
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 1.2e-123 447.2 364 62.4
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 3.5e-123 445.7 362 63.0
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 4.5e-123 445.3 368 61.4
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 1.0e-122 444.1 327 67.6
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.3e-122 443.7 357 62.5
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 1.7e-122 443.4 371 61.7
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 3.8e-122 442.2 371 61.5
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 8.6e-122 441.0 383 60.3
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 1.5e-121 440.3 359 60.4
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 2.5e-121 439.5 371 62.3
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 9.5e-121 437.6 366 62.3
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 1.6e-120 436.8 327 66.1
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 2.1e-120 436.4 359 62.7
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 2.8e-120 436.0 365 62.5
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 2.8e-120 436.0 352 60.5
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 6.1e-120 434.9 427 55.0
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 4.4e-118 428.7 361 61.2
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 4.4e-118 428.7 366 61.5
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 7.5e-118 427.9 332 62.7
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 1.8e-116 423.3 324 59.6
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 2.4e-116 422.9 327 65.1
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 3.2e-116 422.5 358 61.2
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 7.0e-116 421.4 352 62.2
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 1.2e-115 420.6 352 62.2
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 1.2e-115 420.6 358 57.8
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 2.0e-115 419.9 350 62.0
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 2.0e-115 419.9 329 61.4
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 5.9e-115 418.3 358 60.9
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 7.8e-115 417.9 357 59.9
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 8.6e-114 414.5 357 60.2
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 1.1e-113 414.1 328 63.4
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 1.1e-113 414.1 359 61.3
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.5e-113 412.9 328 62.5
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 2.5e-113 412.9 371 59.8
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 2.5e-113 412.9 370 58.1
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 5.6e-113 411.8 320 65.3
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 9.5e-113 411.0 358 60.6
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 9.5e-113 411.0 328 62.2
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 4.7e-112 408.7 358 59.8
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 8.0e-112 407.9 328 62.5
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 8.0e-112 407.9 358 58.7
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 4.0e-111 405.6 361 58.2
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 4.0e-111 405.6 358 58.4
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 6.8e-111 404.8 365 59.2
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 1.2e-110 404.1 342 59.9
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 3.4e-110 402.5 329 61.7
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 7.5e-110 401.4 358 57.5
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 9.8e-110 401.0 354 58.8
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.7e-109 400.2 358 58.4
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 3.7e-109 399.1 342 60.2
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.1e-108 397.5 358 57.5
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.4e-108 397.1 361 57.3
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 4.1e-108 395.6 357 58.3
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 1.6e-107 393.7 332 61.7
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 4.6e-107 392.1 363 54.8
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 1.0e-106 391.0 322 58.1
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 5.0e-106 388.7 431 50.6
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.2e-104 384.0 331 59.8
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 1.2e-104 384.0 357 57.1
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 1.1e-103 380.9 368 57.6
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 1.8e-103 380.2 324 62.7
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 5.2e-103 378.6 322 62.1
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.5e-102 377.1 350 59.4
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 9.8e-102 374.4 268 63.4
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 1.7e-101 373.6 326 58.6
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 6.4e-101 371.7 358 53.9
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 8.3e-101 371.3 359 54.9
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 3.5e-99 365.9 325 60.0
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 4.6e-99 365.5 325 58.8
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 1.3e-98 364.0 357 53.8
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 1.7e-98 363.6 359 54.0
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 1.7e-98 363.6 355 54.6
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 3.0e-98 362.8 354 53.4
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 1.9e-97 360.1 345 54.5
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.9e-97 360.1 335 54.9
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 4.3e-97 359.0 299 60.9
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 9.5e-97 357.8 326 57.7
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 9.5e-97 357.8 364 53.6
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 1.1e-95 354.4 355 54.4
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 8.9e-95 351.3 348 54.6
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 1.2e-94 350.9 345 54.8
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 3.2e-92 342.8 411 46.7
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 7.1e-92 341.7 352 47.4
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 2.7e-91 339.7 284 57.4
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 1.0e-90 337.8 319 57.1
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.3e-90 337.4 277 58.8
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 1.1e-89 334.3 296 58.8
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 2.1e-88 330.1 225 66.2
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.4e-87 327.4 286 59.4
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 1.4e-87 327.4 327 47.4
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 3.1e-87 326.2 274 58.4
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 4.4e-86 322.4 352 52.0
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 5.8e-86 322.0 347 50.7
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 2.2e-85 320.1 358 49.2
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 2.9e-85 319.7 296 55.7
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 4.9e-85 318.9 276 57.2
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 2.3e-82 310.1 202 66.8
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 3.0e-82 309.7 358 49.2
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 3.0e-82 309.7 316 50.9
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 5.6e-81 305.4 357 49.0
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 2.8e-80 303.1 325 48.9
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 9.3e-76 288.1 358 43.6
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 9.3e-76 288.1 333 49.5
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 3.0e-74 283.1 330 49.1
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 3.3e-73 279.6 331 48.9
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 7.4e-73 278.5 333 49.5
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 8.1e-72 275.0 328 47.9
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 1.4e-71 274.2 330 49.7
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 1.8e-71 273.9 333 49.2
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 3.1e-71 273.1 214 56.5
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 4.0e-71 272.7 341 47.8
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 9.0e-71 271.6 298 49.3
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 1.2e-70 271.2 334 50.0
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 2.0e-70 270.4 334 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 5.8e-70 268.9 328 45.4
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 5.8e-70 268.9 332 48.8
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 5.5e-68 262.3 329 47.1
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.3e-66 257.7 335 46.6
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 2.3e-66 256.9 333 47.1
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.1e-56 223.8 273 46.5
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 1.4e-55 221.1 220 44.5
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 9.0e-55 218.4 326 41.7
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 1.1e-52 211.5 330 40.3
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 1.1e-52 211.5 319 42.6
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 2.7e-51 206.8 373 38.1
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 3.8e-45 186.4 109 78.0
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 7.9e-43 178.7 110 73.6
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.3e-37 161.4 93 73.1
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 4.1e-15 86.7 102 52.0
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 7.0e-15 85.9 119 34.5
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 1.5e-12 78.2 47 70.2
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 2.5e-12 77.4 48 68.8
Cc02_g27780 Coffea canephora HOM05D003920 ORTHO05D017698 8.3e-08 62.4 43 72.1
QL05p013448 Quercus lobata HOM05D001342 ORTHO05D017698 4.5e-06 56.6 45 66.7


User provided reference genes

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