Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g033340 Solanum pennellii HOM05D006202 ORTHO05D008227 2.1e-230 802.0 398 100.0
Solyc01g073730.4 Solanum lycopersicum HOM05D006202 ORTHO05D008227 4.4e-228 794.3 398 99.2
Nitab4.5_0000468g0040 Nicotiana tabacum HOM05D006202 ORTHO05D008227 2.3e-213 745.3 398 92.5
CAN.G129.48 Capsicum annuum HOM05D006202 ORTHO05D008227 4.1e-210 734.6 398 93.0
Nitab4.5_0010722g0010 Nicotiana tabacum HOM05D006202 ORTHO05D008227 1.7e-203 712.6 378 93.7
PGSC0003DMG401028974 Solanum tuberosum HOM05D006202 ORTHO05D008227 1.0e-200 703.4 348 98.6
Peaxi162Scf00402g00616 Petunia axillaris HOM05D006202 ORTHO05D008227 2.8e-198 695.3 378 91.0
Dinv43939 Davidia involucrata HOM05D006202 ORTHO05D008227 1.6e-182 642.9 398 78.1
QL04p001552 Quercus lobata HOM05D006202 ORTHO05D008227 2.1e-182 642.5 367 83.9
CSS0029964 Camellia sinensis var. sinensis HOM05D006202 ORTHO05D008227 4.8e-182 641.3 366 83.3
Oeu060701.1 Olea europaea HOM05D006202 ORTHO05D008227 1.2e-180 636.7 398 78.4
TAR369G0651 Trochodendron aralioides HOM05D006202 ORTHO05D008227 1.3e-179 633.3 397 78.1
Migut.I00539 Erythranthe guttata HOM05D006202 ORTHO05D008227 6.4e-179 630.9 398 76.9
Actinidia21584 Actinidia chinensis HOM05D006202 ORTHO05D008227 8.4e-179 630.6 394 77.2
Rhsim03G0068600 Rhododendron simsii HOM05D006202 ORTHO05D008227 2.1e-177 625.9 382 78.8
Cc02_g26930 Coffea canephora HOM05D006202 ORTHO05D008227 2.7e-177 625.5 398 77.9
Manes.10G152100 Manihot esculenta HOM05D006202 ORTHO05D008227 6.0e-177 624.4 402 76.1
Cfa010710 Carpinus fangiana HOM05D006202 ORTHO05D008227 1.3e-176 623.2 373 80.2
MSTRG.28100 Avicennia marina HOM05D006202 ORTHO05D008227 6.7e-176 620.9 398 75.6
vmacro21164 Vaccinium macrocarpon HOM05D006202 ORTHO05D008227 1.9e-175 619.4 348 84.2
Lj9C620G10 Lonicera japonica HOM05D006202 ORTHO05D008227 2.5e-175 619.0 348 84.5
Migut.B01400 Erythranthe guttata HOM05D006202 ORTHO05D008227 1.6e-174 616.3 398 75.9
Nn2g15679 Nelumbo nucifera HOM05D006202 ORTHO05D008227 4.8e-174 614.8 394 76.1
SalBow5G5675 Salvia bowleyana HOM05D006202 ORTHO05D008227 4.8e-174 614.8 398 75.6
Haze_03268 Corylus avellana HOM05D006202 ORTHO05D008227 6.2e-174 614.4 400 76.2
Potri.009G024100 Populus trichocarpa HOM05D006202 ORTHO05D008227 6.2e-174 614.4 400 75.8
Cpa.g.sc189.4 Carica papaya HOM05D006202 ORTHO05D008227 1.4e-173 613.2 371 80.3
MBI04_g33961_MAGBIO Magnolia biondii HOM05D006202 ORTHO05D008227 1.4e-173 613.2 380 79.5
TWI73G0821 Tripterygium wilfordii HOM05D006202 ORTHO05D008227 1.8e-173 612.8 390 75.1
DCAR_001807 Daucus carota HOM05D006202 ORTHO05D008227 1.5e-172 609.8 348 84.2
SGA_v2.0_scaffold5G03106 Striga asiatica HOM05D006202 ORTHO05D008227 2.0e-172 609.4 366 79.5
Ciclev10031726m.g Citrus clementina HOM05D006202 ORTHO05D008227 2.6e-172 609.0 404 75.7
Glyma.15G268400 Glycine max HOM05D006202 ORTHO05D008227 4.5e-172 608.2 375 77.9
Prupe.1G561800 Prunus persica HOM05D006202 ORTHO05D008227 1.3e-171 606.7 378 77.5
ECA234G4350 Erigeron canadensis HOM05D006202 ORTHO05D008227 2.9e-171 605.5 398 75.4
MD02G1319400 Malus domestica HOM05D006202 ORTHO05D008227 2.9e-171 605.5 376 79.0
Aqoxy1G00030 Aquilegia oxysepala HOM05D006202 ORTHO05D008227 4.9e-171 604.7 372 79.0
THA.LOC104815880 Tarenaya hassleriana HOM05D006202 ORTHO05D008227 4.9e-171 604.7 401 74.6
Glyma.08G157800 Glycine max HOM05D006202 ORTHO05D008227 8.4e-171 604.0 401 73.3
CiPaw.02G012300 Carya illinoinensis HOM05D006202 ORTHO05D008227 1.4e-170 603.2 384 76.3
Lalb_Chr01g0015151 Lupinus albus HOM05D006202 ORTHO05D008227 4.2e-170 601.7 368 77.2
Atru.chr11.2704 Acer truncatum HOM05D006202 ORTHO05D008227 9.3e-170 600.5 399 75.2
Aa31LG5G5070 Aethionema arabicum HOM05D006202 ORTHO05D008227 1.2e-169 600.1 398 74.9
Lj3g0005275 Lotus japonicus HOM05D006202 ORTHO05D008227 1.2e-169 600.1 358 80.2
RcHm_v2.0_Chr1g0313251 Rosa chinensis HOM05D006202 ORTHO05D008227 1.2e-169 600.1 347 81.3
HanXRQChr16g0520351 Helianthus annuus HOM05D006202 ORTHO05D008227 4.6e-169 598.2 388 75.5
GSVIVG01001357001 Vitis vinifera HOM05D006202 ORTHO05D008227 4.6e-169 598.2 409 73.1
VMungo1080G0924 Vigna mungo HOM05D006202 ORTHO05D008227 1.0e-168 597.0 403 73.2
Lsat_1_v5_gn_4_46560 Lactuca sativa HOM05D006202 ORTHO05D008227 1.3e-168 596.7 389 75.1
PSO384G0467 Papaver somniferum HOM05D006202 ORTHO05D008227 3.9e-168 595.1 374 77.8
Sc10g0005310 Simmondsia chinensis HOM05D006202 ORTHO05D008227 3.9e-168 595.1 354 79.1
arahy.Tifrunner.gnm1.ann1.Y9YBLC Arachis hypogaea HOM05D006202 ORTHO05D008227 5.1e-168 594.7 368 77.4
Phvul.005G042000 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 5.1e-168 594.7 372 77.7
Sed0014986 Sechium edule HOM05D006202 ORTHO05D008227 5.1e-168 594.7 379 76.5
ClCG09G003710 Citrullus lanatus HOM05D006202 ORTHO05D008227 8.7e-168 594.0 350 80.3
arahy.Tifrunner.gnm1.ann1.03K86Q Arachis hypogaea HOM05D006202 ORTHO05D008227 1.5e-167 593.2 368 77.2
PSO339G0702 Papaver somniferum HOM05D006202 ORTHO05D008227 1.9e-167 592.8 374 77.3
BcaC01g05926 Brassica carinata HOM05D006202 ORTHO05D008227 5.6e-167 591.3 350 80.0
Eucgr.A00079 Eucalyptus grandis HOM05D006202 ORTHO05D008227 5.6e-167 591.3 384 76.8
BraA03t11059Z Brassica rapa HOM05D006202 ORTHO05D008227 1.3e-166 590.1 350 80.0
Duzib168G0949 Durio zibethinus HOM05D006202 ORTHO05D008227 1.3e-166 590.1 370 77.0
Eucgr.A00275 Eucalyptus grandis HOM05D006202 ORTHO05D008227 1.3e-166 590.1 384 76.6
TPR.G16148 Trifolium pratense HOM05D006202 ORTHO05D008227 1.6e-166 589.7 345 80.6
Medtr2g061710 Medicago truncatula HOM05D006202 ORTHO05D008227 2.1e-166 589.3 345 80.3
Carub.0004s1327 Capsella rubella HOM05D006202 ORTHO05D008227 2.8e-166 589.0 360 78.3
AT2G31955 Arabidopsis thaliana HOM05D006202 ORTHO05D008227 3.7e-166 588.6 377 75.6
AL4G27290 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 4.8e-166 588.2 376 76.1
FvH4_5g30330 Fragaria vesca HOM05D006202 ORTHO05D008227 8.2e-166 587.4 358 79.3
Sp4g14320 Schrenkiella parvula HOM05D006202 ORTHO05D008227 8.2e-166 587.4 398 73.1
FAN04G1730 Fragaria x ananassa HOM05D006202 ORTHO05D008227 1.4e-165 586.6 358 78.8
Thecc.09G200100 Theobroma cacao HOM05D006202 ORTHO05D008227 1.4e-165 586.6 353 78.5
FAN08G1924 Fragaria x ananassa HOM05D006202 ORTHO05D008227 2.4e-165 585.9 347 79.8
Thhalv10016791m.g Eutrema salsugineum HOM05D006202 ORTHO05D008227 4.0e-165 585.1 370 77.3
FAN18G2168 Fragaria x ananassa HOM05D006202 ORTHO05D008227 4.0e-165 585.1 351 80.1
Os12g0507000 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 4.0e-165 585.1 370 75.9
BolC3t14483H Brassica oleracea HOM05D006202 ORTHO05D008227 5.3e-165 584.7 351 79.5
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 6.9e-165 584.3 353 78.8
Ca_03201_v3 Cicer arietinum L. HOM05D006202 ORTHO05D008227 1.2e-164 583.6 365 76.4
arahy.Tifrunner.gnm1.ann1.YK6119 Arachis hypogaea HOM05D006202 ORTHO05D008227 1.5e-164 583.2 368 76.4
FAN13G0191 Fragaria x ananassa HOM05D006202 ORTHO05D008227 1.5e-164 583.2 358 78.8
unitig_749.g13486 Utricularia gibba HOM05D006202 ORTHO05D008227 5.8e-164 581.3 353 77.6
Sabra09G0015400 Salix brachista HOM05D006202 ORTHO05D008227 1.0e-163 580.5 460 66.1
Zm00001eb244230 Zea mays HOM05D006202 ORTHO05D008227 2.9e-163 578.9 350 78.3
Ah.14g085700 Amaranthus hybridus HOM05D006202 ORTHO05D008227 6.5e-163 577.8 390 71.8
Phvul.005G041900 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 8.4e-163 577.4 327 83.2
AUR62034625 Chenopodium quinoa HOM05D006202 ORTHO05D008227 1.9e-162 576.2 369 73.7
Os02g0258900 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 1.9e-162 576.2 350 77.1
ATR0605G327 Amborella trichopoda HOM05D006202 ORTHO05D008227 2.5e-162 575.9 395 73.4
AUR62036652 Chenopodium quinoa HOM05D006202 ORTHO05D008227 2.5e-162 575.9 369 73.7
Gohir.D08G018900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 1.0e-160 570.5 330 81.5
Gorai.004G013400 Gossypium raimondii HOM05D006202 ORTHO05D008227 1.0e-160 570.5 330 81.8
CsaV3_7G031490 Cucumis sativus L. HOM05D006202 ORTHO05D008227 5.1e-160 568.2 319 84.3
Gohir.A08G008900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 6.7e-160 567.8 330 80.6
CANSAT80G0703 Cannabis sativa HOM05D006202 ORTHO05D008227 1.1e-159 567.0 360 75.8
EL10Ac3g06182 Beta vulgaris HOM05D006202 ORTHO05D008227 2.0e-156 556.2 366 72.1
HPP92_023784 Vanilla planifolia HOM05D006202 ORTHO05D008227 1.7e-155 553.1 352 75.6
A03p17940 Brassica napus HOM05D000200 ORTHO05D000262 5.7e-151 538.1 327 78.6
C03p21020 Brassica napus HOM05D000200 ORTHO05D000262 3.7e-150 535.4 327 78.0
SEGI_40145 Sequoiadendron giganteum HOM05D006202 ORTHO05D008227 3.6e-145 518.8 359 69.9
SMO361G0213 Selaginella moellendorffii HOM05D006202 ORTHO05D008227 6.7e-144 514.6 346 69.7
Actinidia15848 Actinidia chinensis HOM05D006202 ORTHO05D008227 1.5e-143 513.5 387 68.0
Pp3c5_22480 Physcomitrium patens HOM05D006202 ORTHO05D008227 3.7e-142 508.8 334 71.6
Mapoly0045s0149 Marchantia polymorpha HOM05D006202 ORTHO05D008227 4.8e-142 508.4 377 65.3
CDE06G1615 Ceratophyllum demersum HOM05D006202 ORTHO05D008227 1.7e-139 500.0 353 70.0
CBR_g36677 Chara braunii HOM05D006202 ORTHO05D008227 2.7e-137 492.7 330 69.7
Potri.001G230604 Populus trichocarpa HOM05D006202 ORTHO05D008227 1.1e-133 480.7 399 64.4
arahy.Tifrunner.gnm1.ann1.JS3HL2 Arachis hypogaea HOM05D006202 ORTHO05D008227 7.2e-130 468.0 368 65.5
MCO15G349 Micromonas commoda HOM05D006202 ORTHO05D008227 8.5e-123 444.5 329 63.5
AL80U10060 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 7.2e-122 441.4 376 61.7
TAR369G1105 Trochodendron aralioides HOM05D006202 ORTHO05D008227 8.8e-120 434.5 283 75.6
Cre13.g602901 Chlamydomonas reinhardtii HOM05D006202 ORTHO05D008227 6.3e-118 428.3 398 56.0
PRCOL_00002201 Prasinoderma coloniale HOM05D006202 ORTHO05D008227 8.0e-113 411.4 334 59.0
MELO3C023505.2 Cucumis melo HOM05D006202 ORTHO05D008227 9.2e-109 397.9 236 79.7
CARHR125690 Cardamine hirsuta HOM05D006202 ORTHO05D008227 2.0e-108 396.7 270 73.3
Hund12940 Selenicereus undatus HOM05D006202 ORTHO05D008227 2.9e-107 392.9 248 74.2
Psat1g128920 Pisum sativum HOM05D006202 ORTHO05D008227 4.3e-106 389.0 288 68.1
Pp3c6_6420 Physcomitrium patens HOM05D006202 ORTHO05D008227 4.7e-105 385.6 327 58.7
Cfa022704 Carpinus fangiana HOM05D006202 ORTHO05D008227 1.2e-97 360.9 372 50.0
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 6.4e-70 268.9 287 46.0
SHI12251 Sapria himalayana HOM05D006202 ORTHO05D008227 1.1e-64 251.5 168 73.2
SHI12244 Sapria himalayana HOM05D006202 ORTHO05D008227 8.4e-62 241.9 165 69.7
AagrBONN_evm.TU.Sc2ySwM_344.4902 Anthoceros agrestis HOM05D006202 ORTHO05D008227 1.0e-59 235.0 168 65.5
SHI12245 Sapria himalayana HOM05D006202 ORTHO05D008227 2.0e-47 194.1 163 62.0
ATR0605G108 Amborella trichopoda HOM05D006202 ORTHO05D008227 5.5e-45 186.0 131 71.0
SHI34064 Sapria himalayana HOM05D006202 ORTHO05D367267 3.5e-15 87.0 59 78.0
A05p13580 Brassica napus HOM05D006202 ORTHO05D033532 3.8e-14 83.6 88 51.1
BraA05t20295Z Brassica rapa HOM05D006202 ORTHO05D033532 3.8e-14 83.6 88 51.1
TAR623G0116 Trochodendron aralioides HOM05D006202 ORTHO05D414173 1.3e-09 68.6 35 82.9


User provided reference genes

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