Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 2.4e-35 151.8 83 100.0
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 3.6e-31 137.9 83 91.6
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 2.6e-26 121.7 80 82.5
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 1.7e-25 119.0 77 84.4
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 8.0e-23 110.2 81 74.1
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 1.4e-22 109.4 80 78.8
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 1.8e-22 109.0 82 72.0
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 1.8e-22 109.0 82 73.2
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 2.3e-22 108.6 78 75.6
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 2.0e-18 95.5 71 73.2
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 2.0e-18 95.5 82 65.9
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 5.9e-18 94.0 70 74.3
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 5.0e-17 90.9 74 68.9
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 3.2e-16 88.2 80 62.5
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 4.2e-16 87.8 85 60.0
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 9.4e-16 86.7 66 69.7
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 9.4e-16 86.7 74 66.2
Nitab4.5_0002319g0020 Nicotiana tabacum HOM05D004722 ORTHO05D005453 4.7e-15 84.3 80 63.8
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 8.0e-15 83.6 66 72.7
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 8.0e-15 83.6 66 65.2
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 1.0e-14 83.2 78 59.0
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.4e-14 82.8 69 65.2
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 1.8e-14 82.4 79 62.0
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 1.8e-14 82.4 66 68.2
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 2.3e-14 82.0 73 64.4
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 4.0e-14 81.3 71 66.2
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 4.0e-14 81.3 70 62.9
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 4.0e-14 81.3 69 65.2
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.2e-14 80.9 71 66.2
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 6.8e-14 80.5 68 63.2
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 8.8e-14 80.1 69 63.8
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 8.8e-14 80.1 79 54.4
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.2e-13 79.7 71 66.2
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.2e-13 79.7 79 54.4
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 1.5e-13 79.3 68 64.7
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 1.5e-13 79.3 70 64.3
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.5e-13 79.3 65 66.2
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.5e-13 79.3 65 66.2
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 1.5e-13 79.3 63 66.7
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 2.0e-13 79.0 71 66.2
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 3.4e-13 78.2 72 58.3
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 3.4e-13 78.2 69 63.8
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 3.4e-13 78.2 71 66.2
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 4.4e-13 77.8 66 66.7
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 4.4e-13 77.8 78 57.7
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 5.7e-13 77.4 74 58.1
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 7.5e-13 77.0 64 67.2
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 9.8e-13 76.6 74 60.8
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 9.8e-13 76.6 68 60.3
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.3e-12 76.3 78 57.7
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 1.3e-12 76.3 74 56.8
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 1.3e-12 76.3 77 54.5
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 1.3e-12 76.3 76 56.6
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 2.2e-12 75.5 66 60.6
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 2.2e-12 75.5 67 62.7
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 2.2e-12 75.5 65 64.6
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 3.7e-12 74.7 67 64.2
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 4.8e-12 74.3 66 60.6
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 6.3e-12 73.9 73 60.3
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 6.3e-12 73.9 74 60.8
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 6.3e-12 73.9 67 58.2
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 8.3e-12 73.6 65 61.5
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 1.1e-11 73.2 67 61.2
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.4e-11 72.8 73 53.4
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.4e-11 72.8 73 53.4
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 1.4e-11 72.8 67 61.2
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 1.4e-11 72.8 76 55.3
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 1.4e-11 72.8 67 61.2
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 1.4e-11 72.8 67 61.2
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 1.4e-11 72.8 67 61.2
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 1.4e-11 72.8 67 61.2
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.4e-11 72.8 66 59.1
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.8e-11 72.4 65 61.5
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 1.8e-11 72.4 64 60.9
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 1.8e-11 72.4 65 61.5
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 2.4e-11 72.0 67 61.2
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 3.1e-11 71.6 68 57.4
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 3.1e-11 71.6 62 59.7
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 4.1e-11 71.2 79 53.2
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 5.4e-11 70.9 79 54.4
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 5.4e-11 70.9 72 54.2
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 7.0e-11 70.5 70 54.3
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 7.0e-11 70.5 70 54.3
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 7.0e-11 70.5 70 54.3
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 1.2e-10 69.7 77 51.9
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.6e-10 69.3 71 56.3
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 1.6e-10 69.3 64 60.9
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 1.6e-10 69.3 67 59.7
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 2.0e-10 68.9 64 62.5
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 4.5e-10 67.8 77 51.9
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 4.5e-10 67.8 84 48.8
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 4.5e-10 67.8 72 56.9
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 5.9e-10 67.4 67 56.7
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 5.9e-10 67.4 67 56.7
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 5.9e-10 67.4 67 56.7
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 1.0e-09 66.6 71 52.1
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.0e-09 66.6 85 50.6
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 1.3e-09 66.2 80 47.5
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 1.3e-09 66.2 62 59.7
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.7e-09 65.9 88 44.3
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 1.7e-09 65.9 77 53.2
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 2.2e-09 65.5 63 57.1
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 2.2e-09 65.5 77 50.6
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 2.2e-09 65.5 69 52.2
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 2.9e-09 65.1 73 49.3
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 2.9e-09 65.1 75 50.7
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.0e-09 64.3 65 53.8
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 5.0e-09 64.3 64 59.4
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 5.0e-09 64.3 80 51.2
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 5.0e-09 64.3 67 53.7
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 5.0e-09 64.3 61 59.0
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 8.5e-09 63.5 73 53.4
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.5e-08 62.8 72 52.8
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 1.5e-08 62.8 80 52.5
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 1.5e-08 62.8 71 50.7
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.9e-08 62.4 64 53.1
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 1.9e-08 62.4 60 58.3
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 2.5e-08 62.0 76 51.3
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.2e-08 61.2 78 46.2
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.2e-08 61.2 78 46.2
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 4.2e-08 61.2 78 46.2
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 7.2e-08 60.5 56 60.7
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 9.4e-08 60.1 64 54.7
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 1.2e-07 59.7 71 49.3
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.6e-07 59.3 88 43.2
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 1.6e-07 59.3 64 54.7
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 3.6e-07 58.2 50 66.0
SalBow4G0140 Salvia bowleyana HOM05D004722 ORTHO05D005453 3.6e-07 58.2 59 57.6
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 4.7e-07 57.8 62 54.8
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 4.7e-07 57.8 65 56.9
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 6.1e-07 57.4 63 54.0
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 8.0e-07 57.0 72 45.8
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 8.0e-07 57.0 67 47.8
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 1.0e-06 56.6 67 49.3
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 1.4e-06 56.2 70 48.6
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 2.3e-06 55.5 65 47.7
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 2.3e-06 55.5 72 48.6
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 6.8e-06 53.9 72 45.8
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 6.8e-06 53.9 59 50.8
ATR0598G063 Amborella trichopoda HOM05D004722 ORTHO05D005453 8.8e-06 53.5 64 56.2
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 8.8e-06 53.5 66 47.0


User provided reference genes

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