Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 3.9e-257 891.0 452 100.0
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.0e-252 876.3 452 98.2
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 6.3e-231 803.9 452 89.8
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 2.8e-207 725.3 447 81.2
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.6e-181 638.3 452 76.3
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 3.4e-168 595.5 453 66.7
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 2.3e-164 582.8 447 65.5
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 2.4e-161 572.8 447 63.5
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 1.2e-136 490.7 455 54.1
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 1.5e-136 490.3 451 55.0
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 5.9e-136 488.4 455 53.4
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 1.0e-135 487.6 455 54.7
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 5.0e-135 485.3 455 54.7
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 1.9e-134 483.4 445 55.1
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 1.2e-133 480.7 450 54.9
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 2.3e-132 476.5 453 52.5
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.3e-130 470.7 445 52.8
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 1.3e-130 470.7 464 52.8
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 1.7e-130 470.3 445 53.7
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 8.2e-130 468.0 450 54.0
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.5e-128 463.8 456 52.0
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 1.5e-128 463.8 480 49.6
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 4.5e-128 462.2 454 52.6
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 4.5e-128 462.2 454 52.6
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.3e-127 460.7 459 52.5
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 1.7e-127 460.3 455 52.1
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.8e-127 459.1 454 52.0
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 5.0e-127 458.8 464 51.7
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 1.9e-126 456.8 456 50.4
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 2.5e-126 456.4 414 54.8
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 5.5e-126 455.3 455 51.0
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 9.4e-126 454.5 447 50.8
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 9.4e-126 454.5 446 50.9
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 2.7e-125 453.0 451 51.9
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 4.7e-125 452.2 472 50.0
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 6.1e-125 451.8 446 50.9
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 1.4e-124 450.7 466 48.9
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 1.8e-124 450.3 453 49.9
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 3.0e-124 449.5 457 50.1
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 3.0e-124 449.5 441 50.6
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.0e-124 449.5 449 50.8
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 3.9e-124 449.1 449 50.6
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 5.1e-124 448.7 462 50.6
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 1.1e-123 447.6 454 49.6
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 1.5e-123 447.2 454 50.9
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 2.0e-123 446.8 442 51.4
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 3.3e-123 446.0 453 49.2
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 4.4e-123 445.7 449 49.9
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 7.4e-123 444.9 460 50.2
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.3e-122 444.1 457 50.1
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.2e-122 443.4 445 53.0
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 2.8e-122 443.0 450 49.8
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 3.7e-122 442.6 453 49.2
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 8.2e-122 441.4 483 48.7
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 1.4e-121 440.7 483 48.7
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 1.4e-121 440.7 458 49.6
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 1.4e-121 440.7 461 49.9
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.4e-121 440.7 453 49.0
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.4e-121 440.7 458 48.9
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 1.4e-121 440.7 459 50.3
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 3.1e-121 439.5 461 50.1
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 3.1e-121 439.5 430 50.5
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 4.1e-121 439.1 448 49.1
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 4.1e-121 439.1 443 50.3
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 5.3e-121 438.7 459 49.5
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 5.3e-121 438.7 459 49.7
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 9.1e-121 438.0 458 49.6
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 9.1e-121 438.0 455 48.6
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 9.1e-121 438.0 452 48.2
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.2e-120 437.6 456 48.2
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 1.2e-120 437.6 456 50.0
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.5e-120 437.2 457 48.6
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 2.0e-120 436.8 454 49.8
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 3.4e-120 436.0 453 48.6
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 4.5e-120 435.6 457 48.4
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 5.9e-120 435.3 447 49.7
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 7.7e-120 434.9 448 49.6
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.0e-119 434.5 460 49.3
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 1.7e-119 433.7 458 48.0
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 1.7e-119 433.7 458 48.0
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 1.7e-119 433.7 457 48.4
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 2.2e-119 433.3 457 48.4
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 2.2e-119 433.3 452 48.7
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 2.9e-119 433.0 457 48.4
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 2.9e-119 433.0 457 48.4
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 3.8e-119 432.6 457 47.9
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 5.0e-119 432.2 457 48.1
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 5.0e-119 432.2 459 49.9
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 6.5e-119 431.8 456 48.5
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 8.5e-119 431.4 448 48.7
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 8.5e-119 431.4 455 48.1
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 8.5e-119 431.4 455 48.1
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 1.4e-118 430.6 449 49.9
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 1.9e-118 430.3 446 48.9
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 4.2e-118 429.1 477 47.4
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 4.2e-118 429.1 455 49.2
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 5.5e-118 428.7 419 51.8
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 9.4e-118 427.9 452 48.7
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 2.1e-117 426.8 455 48.1
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 3.6e-117 426.0 458 49.3
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 8.0e-117 424.9 456 48.2
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.0e-116 424.5 480 47.5
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.4e-116 424.1 456 47.6
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 3.9e-116 422.5 453 49.0
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 3.9e-116 422.5 445 49.4
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 6.7e-116 421.8 452 49.8
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 8.8e-116 421.4 484 45.5
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 1.1e-115 421.0 487 45.8
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 3.3e-115 419.5 453 49.7
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 1.7e-114 417.2 445 49.4
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 3.7e-114 416.0 447 48.1
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 2.4e-113 413.3 398 51.3
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 3.1e-113 412.9 400 52.0
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 3.1e-113 412.9 544 43.0
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 4.1e-113 412.5 389 53.2
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 1.6e-112 410.6 478 45.8
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 2.6e-112 409.8 453 46.6
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 1.0e-111 407.9 470 47.2
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 1.2e-109 401.0 414 49.8
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 1.5e-107 394.0 406 49.0
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 5.7e-107 392.1 390 54.4
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.1e-102 377.9 438 47.0
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 4.7e-101 372.5 391 48.8
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 4.4e-99 365.9 426 44.4
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 2.0e-96 357.1 450 42.2
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 6.6e-95 352.1 384 47.1
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 1.1e-94 351.3 432 43.1
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.5e-88 329.7 349 49.0
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 3.2e-81 306.6 319 50.2
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 5.2e-76 289.3 438 39.3
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 2.0e-75 287.3 452 38.3
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 4.1e-73 279.6 287 48.4
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.6e-64 251.1 254 48.8
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 3.5e-64 250.0 291 45.7
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 4.2e-57 226.5 264 45.1
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 5.8e-51 206.1 312 40.1
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 3.5e-48 196.8 187 50.8
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 6.2e-45 186.0 195 51.3
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 2.4e-44 184.1 191 50.8
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 7.1e-41 172.6 158 54.4
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 2.1e-40 171.0 178 46.6
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 3.2e-33 147.1 133 51.9
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 5.7e-30 136.3 143 50.3
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 9.0e-28 129.0 135 51.1
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 3.0e-23 114.0 118 50.0
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 8.7e-23 112.5 121 47.1
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 1.1e-22 112.1 111 53.2
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 9.7e-22 109.0 133 44.4
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 9.0e-20 102.4 99 48.5
Nitab4.5_0000468g0200 Nicotiana tabacum HOM05D004544 ORTHO05D283929 2.2e-18 97.8 355 32.7
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 3.2e-17 94.0 100 46.0
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 1.8e-15 88.2 72 54.2
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 4.8e-13 80.1 74 48.6
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 1.1e-09 68.9 56 58.9
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 3.6e-08 63.9 60 46.7
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 3.9e-07 60.5 76 44.7


User provided reference genes

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