Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 3.0e-257 891.3 456 100.0
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 4.8e-255 884.0 456 98.9
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 8.3e-247 856.7 456 94.7
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 7.2e-243 843.6 456 95.2
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 5.4e-222 774.2 451 87.1
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 9.9e-200 700.3 452 77.9
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 2.9e-199 698.7 456 76.8
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 1.1e-198 696.8 456 76.5
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.8e-193 679.5 448 75.9
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 2.2e-191 672.5 456 75.2
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 4.9e-191 671.4 456 74.3
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 4.2e-190 668.3 450 74.7
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 7.1e-190 667.5 473 70.6
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.8e-188 662.9 456 74.3
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 1.8e-188 662.9 470 71.3
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 3.7e-186 655.2 457 75.3
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 5.3e-185 651.4 454 72.2
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 5.8e-184 647.9 473 70.6
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 7.6e-184 647.5 460 72.2
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 7.6e-184 647.5 460 72.2
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 9.9e-184 647.1 457 72.0
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 1.3e-183 646.7 454 69.4
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 2.9e-183 645.6 448 71.9
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.8e-183 645.2 450 72.7
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 1.1e-182 643.7 453 70.0
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 5.5e-182 641.3 454 70.7
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 1.2e-181 640.2 456 69.5
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 2.1e-181 639.4 454 69.8
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 2.7e-181 639.0 453 70.0
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 3.5e-181 638.6 453 69.8
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 3.5e-181 638.6 460 69.3
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 6.0e-181 637.9 389 83.0
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 7.9e-181 637.5 453 69.8
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.3e-180 636.7 460 69.6
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 5.1e-180 634.8 450 69.8
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.1e-179 633.6 454 68.1
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 1.5e-179 633.3 463 68.3
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 1.9e-179 632.9 440 70.9
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 3.3e-179 632.1 458 71.2
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 4.3e-179 631.7 458 69.7
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 5.6e-179 631.3 458 69.0
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 9.6e-179 630.6 457 68.5
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 1.3e-178 630.2 449 70.6
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.8e-178 629.0 453 68.2
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 3.7e-178 628.6 449 68.6
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 3.7e-178 628.6 423 75.7
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 4.8e-178 628.2 453 69.5
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 6.2e-178 627.9 453 69.5
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 1.5e-176 623.2 456 69.1
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 2.0e-176 622.9 416 75.7
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 2.2e-175 619.4 449 66.4
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 2.2e-175 619.4 469 68.2
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.8e-175 618.6 453 65.8
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 3.8e-175 618.6 449 68.2
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 4.9e-175 618.2 458 66.6
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 8.4e-175 617.5 454 65.4
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 1.1e-174 617.1 436 70.9
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.5e-174 615.9 451 68.1
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 4.2e-174 615.1 454 64.8
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 5.5e-174 614.8 450 66.2
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 2.1e-173 612.8 450 65.8
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 2.1e-173 612.8 450 66.0
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 3.5e-173 612.1 450 66.0
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 3.5e-173 612.1 450 66.0
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 3.5e-173 612.1 441 68.5
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 6.0e-173 611.3 451 69.0
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 7.9e-173 610.9 458 65.7
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.0e-172 610.5 450 66.2
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 1.3e-172 610.1 439 69.5
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 1.8e-172 609.8 466 66.5
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 2.3e-172 609.4 449 65.5
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 3.0e-172 609.0 451 67.6
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 5.1e-172 608.2 466 66.3
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 5.1e-172 608.2 457 68.5
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 6.7e-172 607.8 444 67.8
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 1.1e-171 607.1 450 65.6
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 4.3e-171 605.1 458 65.3
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 1.3e-170 603.6 449 66.1
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.6e-170 603.2 459 65.1
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 2.1e-170 602.8 456 65.1
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 3.7e-170 602.1 459 65.6
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 3.7e-170 602.1 459 64.9
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 3.7e-170 602.1 459 64.9
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 4.8e-170 601.7 439 67.7
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 4.8e-170 601.7 449 65.9
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 6.3e-170 601.3 450 64.7
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 6.3e-170 601.3 458 65.1
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 1.1e-169 600.5 449 65.3
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 1.1e-169 600.5 449 65.3
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.8e-169 599.7 461 65.1
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 4.1e-169 598.6 459 65.1
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 4.1e-169 598.6 499 63.3
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 6.9e-169 597.8 456 66.7
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 1.5e-168 596.7 447 67.1
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 5.9e-168 594.7 441 66.7
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 1.7e-167 593.2 449 65.9
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 3.8e-167 592.0 471 62.4
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 3.8e-167 592.0 476 62.2
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 5.0e-167 591.7 458 64.6
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.4e-166 590.1 553 57.7
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 5.5e-166 588.2 391 73.4
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 3.6e-165 585.5 393 73.3
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.3e-164 583.6 456 65.1
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 5.1e-164 581.6 451 62.7
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 8.7e-164 580.9 431 68.7
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 1.5e-163 580.1 470 63.0
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.4e-161 573.5 453 64.0
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.0e-159 567.4 478 61.9
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 2.2e-159 566.2 472 62.3
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 6.5e-159 564.7 390 70.0
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 1.0e-156 557.4 456 61.6
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 1.1e-155 553.9 407 70.0
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.6e-155 552.7 457 60.8
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 4.5e-152 542.0 450 60.9
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 5.9e-152 541.6 454 61.0
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 1.4e-148 530.4 450 58.7
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 8.2e-138 494.6 432 58.8
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 2.7e-136 489.6 455 54.1
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 5.9e-136 488.4 452 54.6
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.3e-135 487.3 354 68.9
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 9.4e-134 481.1 455 53.4
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 2.7e-133 479.6 447 55.7
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 2.3e-132 476.5 443 54.4
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 5.2e-132 475.3 451 54.3
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 2.1e-125 453.4 393 58.0
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.0e-120 436.8 444 55.9
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 1.7e-119 433.7 279 75.6
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 8.6e-119 431.4 452 53.8
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.3e-116 423.3 456 50.0
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 3.1e-108 396.4 316 65.5
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 5.2e-108 395.6 398 53.3
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 2.1e-101 373.6 252 71.4
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 9.2e-97 358.2 267 68.5
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.2e-93 347.8 456 44.1
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 7.6e-91 338.6 291 58.1
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 6.9e-76 288.9 198 71.2
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 1.4e-73 281.2 311 52.1
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.6e-69 267.7 457 38.9
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 4.3e-62 243.0 158 79.1
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.3e-58 231.5 142 76.8
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.3e-53 214.9 158 67.7
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 6.3e-53 212.6 178 56.7
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 2.3e-47 194.1 193 51.8
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 3.2e-41 173.7 135 65.2
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 2.7e-40 170.6 180 53.9
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 3.9e-39 166.8 94 90.4
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 2.2e-37 161.0 121 68.6
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.6e-32 144.8 118 63.6
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 2.6e-30 137.5 111 64.9
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 2.6e-27 127.5 77 76.6
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 7.2e-25 119.4 99 56.6
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 6.7e-23 112.8 63 90.5
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 3.5e-19 100.5 72 62.5
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 5.7e-14 83.2 58 72.4
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 2.8e-13 80.9 43 81.4
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 9.1e-12 75.9 42 81.0
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 7.2e-09 66.2 77 46.8


User provided reference genes

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